Cp4.1LG03g16620 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g16620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionF-box/kelch-repeat protein SKIP4
LocationCp4.1LG03 : 13086413 .. 13088232 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGTGTTTTAGGTCCAAGTGGTCTTGAAGAATTGGTCCCACCGACAGGGCGATCGCTGATACCTGGGCTGCCAGATGACATTGTTCTTTCCATCCTCTCAAGGGTTCCTCGAAAATACCATCATAATCTGAAATCTGTCTCAAAGAGATGGAAGGATCTTGTGAACAGCGAAGAGTGGTATTCATGCCGTGAAAAGAATGATCTTGCTGAGACTTGGATATATGCTTTGTGTAGAGACAAGTCTGAACAAGTTTCGTGTTATGTGTTGGATCTTAACTCGTCAAAAAGGCGTTGGAAACAGATGAAAAGTTTACCATCTTGCAGCTTTAAGAGGAAGGGTATGGGGTTTGAAGCAATGGGAAGGAAGCTCTACTTATTAGGTGGTTGCAGTTGGTCTGAAGATGCTACTGATGAAGTTTACTGCTATGATACTTCCACAAATAGCTGGAGTTCAGTTGCGCCATTGTCATCTGCTAGGTAATGATTATCCACACATACCCTTTGACAATATAATGATTTACGTTAAAAAGAAAAGGTACAAAGTGAATACGTTTCTAAATTTCTAGAGGGAAGACTTAATAGAGACAGTTTTTTTTGGTAAAATTTAAAGCGTAACTCATAGTCTTGTGATATCCCACATTGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGATACGTTTTAAAGCCTTGAGGAGAATCCCGAAAGGGAAAGCCCAAAAAGGACAATATCTACTAGCGGTGGGCCTGAGCCGTTGCAAATGGTATTAGAACTAGACACCGGACGATGTGCCAACGAGGAAGCTATTCCTTGAAGGGGGGTAGACACTAGGCAGTGTGCCAGTAAGGATGTTGGGCTCTGAAGGAGGGTGGATTTGGTGGGGGTCCCACACCGATTGGAGAAAGGAATGAGTGCCAGCAAGGATGCTGGGCTCTGAAGGGGGGTGGATTGTGATATCCCACATTGGTTGGGGAGGAGAACGAAACACCCCTTATGTGTGGAAACCTTTCCCTAGCAAACACGTTTTAAAGTCTTGAGGGGAAGCCCGAAAGGGAAAACCCAAAGAAGACAATATCTGCTAGCGGTGGGCCTGGGCCGTTACAAGTCTAGACGAATCTTATAGTTTGTTGTGAATGTAAAGACTAAATTTGGACATTTGAAGTTTACCTTAATGCTTGTATCATCATCATATACAGGTGCTACTTTGCTTGTGAAGTCTTAAATGAAAAGCTTTATGCCATTGGGGGCTTATGTTCCAATTCAGGTGATCGACATTCTTGGGACATATATGACCCATGCACCAACAAATGGGAACCTTGCTTGGACATTACAAATATTCCGAACGAAATTGAAGGTTCGATTGTGATGGATGGAAAGATTTATATCCGTCAACGTTCTGTGGACTCTCAAGCTTATGCTCTGGTTTACGACCCATCGAGTGGAACGTGGGAGCACAGTGACTCAGAAATGGTTTCGGGATGGCGAGGTCCAGCGGTTATTGTAGACAAAACTCTTTATGTTTTGGATCAAAGTTCTGGAACCAGATTGATGATGTGGAACAATGAAGTCAAGGAATGGATTCCAGTGGGGAGATTTTCTGCCCTTCTAACGAGACCGCCATGTCAACTCGTCGCTGTCGGGAAAAGAATCGTCGTCGTGGGGAAGGGACTCAGCAGCGTCATCTTTAATGTGGACAACGCAAGGACTATGGAAGGGTTGATGGTGAGTTCCTCTATACCAAGATTAGATTCTGATGTTGATGTACTTTCCTGTAAATGTGTAACAATTTAA

mRNA sequence

ATGGACAGTGTTTTAGGTCCAAGTGGTCTTGAAGAATTGGTCCCACCGACAGGGCGATCGCTGATACCTGGGCTGCCAGATGACATTGTTCTTTCCATCCTCTCAAGGGTTCCTCGAAAATACCATCATAATCTGAAATCTGTCTCAAAGAGATGGAAGGATCTTGTGAACAGCGAAGAGTGGTATTCATGCCGTGAAAAGAATGATCTTGCTGAGACTTGGATATATGCTTTGTGTAGAGACAAGTCTGAACAAGTTTCGTGTTATGTGTTGGATCTTAACTCGTCAAAAAGGCGTTGGAAACAGATGAAAAGTTTACCATCTTGCAGCTTTAAGAGGAAGGGTATGGGGTTTGAAGCAATGGGAAGGAAGCTCTACTTATTAGGTGGTTGCAGTTGGTGCTACTTTGCTTGTGAAGTCTTAAATGAAAAGCTTTATGCCATTGGGGGCTTATGTTCCAATTCAGGTGATCGACATTCTTGGGACATATATGACCCATGCACCAACAAATGGGAACCTTGCTTGGACATTACAAATATTCCGAACGAAATTGAAGGTTCGATTGTGATGGATGGAAAGATTTATATCCGTCAACGTTCTGTGGACTCTCAAGCTTATGCTCTGGTTTACGACCCATCGAGTGGAACGTGGGAGCACAGTGACTCAGAAATGGTTTCGGGATGGCGAGGTCCAGCGGTTATTGTAGACAAAACTCTTTATGTTTTGGATCAAAGTTCTGGAACCAGATTGATGATGTGGAACAATGAAGTCAAGGAATGGATTCCAGTGGGGAGATTTTCTGCCCTTCTAACGAGACCGCCATGTCAACTCGTCGCTGTCGGGAAAAGAATCGTCGTCGTGGGGAAGGGACTCAGCAGCGTCATCTTTAATGTGGACAACGCAAGGACTATGGAAGGGTTGATGGTGAGTTCCTCTATACCAAGATTAGATTCTGATGTTGATGTACTTTCCTGTAAATGTGTAACAATTTAA

Coding sequence (CDS)

ATGGACAGTGTTTTAGGTCCAAGTGGTCTTGAAGAATTGGTCCCACCGACAGGGCGATCGCTGATACCTGGGCTGCCAGATGACATTGTTCTTTCCATCCTCTCAAGGGTTCCTCGAAAATACCATCATAATCTGAAATCTGTCTCAAAGAGATGGAAGGATCTTGTGAACAGCGAAGAGTGGTATTCATGCCGTGAAAAGAATGATCTTGCTGAGACTTGGATATATGCTTTGTGTAGAGACAAGTCTGAACAAGTTTCGTGTTATGTGTTGGATCTTAACTCGTCAAAAAGGCGTTGGAAACAGATGAAAAGTTTACCATCTTGCAGCTTTAAGAGGAAGGGTATGGGGTTTGAAGCAATGGGAAGGAAGCTCTACTTATTAGGTGGTTGCAGTTGGTGCTACTTTGCTTGTGAAGTCTTAAATGAAAAGCTTTATGCCATTGGGGGCTTATGTTCCAATTCAGGTGATCGACATTCTTGGGACATATATGACCCATGCACCAACAAATGGGAACCTTGCTTGGACATTACAAATATTCCGAACGAAATTGAAGGTTCGATTGTGATGGATGGAAAGATTTATATCCGTCAACGTTCTGTGGACTCTCAAGCTTATGCTCTGGTTTACGACCCATCGAGTGGAACGTGGGAGCACAGTGACTCAGAAATGGTTTCGGGATGGCGAGGTCCAGCGGTTATTGTAGACAAAACTCTTTATGTTTTGGATCAAAGTTCTGGAACCAGATTGATGATGTGGAACAATGAAGTCAAGGAATGGATTCCAGTGGGGAGATTTTCTGCCCTTCTAACGAGACCGCCATGTCAACTCGTCGCTGTCGGGAAAAGAATCGTCGTCGTGGGGAAGGGACTCAGCAGCGTCATCTTTAATGTGGACAACGCAAGGACTATGGAAGGGTTGATGGTGAGTTCCTCTATACCAAGATTAGATTCTGATGTTGATGTACTTTCCTGTAAATGTGTAACAATTTAA

Protein sequence

MDSVLGPSGLEELVPPTGRSLIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCRDKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLGGCSWCYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWEPCLDITNIPNEIEGSIVMDGKIYIRQRSVDSQAYALVYDPSSGTWEHSDSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLTRPPCQLVAVGKRIVVVGKGLSSVIFNVDNARTMEGLMVSSSIPRLDSDVDVLSCKCVTI
Homology
[Close]
BLAST of Cp4.1LG03g16620 vs. Swiss-Prot
Match: SKIP4_ARATH (F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.5e-50
Identity = 100/200 (50.00%), Postives = 131/200 (65.50%), Query Frame = 1 

Query: 134 CYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWEPCLDITNIPNEIEGSIVMDGK 193
           CYFACE L+ K+ AIGGL  N   + +WDIYDP T   + C D+  +P E+E S VMDG+
Sbjct: 162 CYFACETLDGKIIAIGGLGLNPNAKRTWDIYDPLTRTCKSCSDVNIVP-EMEDSFVMDGR 221

Query: 194 IYIRQRSVDSQAYALVYDPSSGTWEHSDSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMW 253
           IYIR     S     VY  SSG WE  D +M SGWRGPAV+V   LYVLDQ+ G +L MW
Sbjct: 222 IYIRGGVGGSST--AVYSASSGIWERMDDDMASGWRGPAVVVAGDLYVLDQTFGAKLTMW 281

Query: 254 NNEVKEWIPVGRFSALLTRPPCQLVAVGKRIVVVGKGLSSVIFNVDNAR--TMEGLMVSS 313
             + + WI +G+ S L+ + PC+LV++G  I V+GK  S+V+ +V+N R   M G+MV S
Sbjct: 282 CKDTRMWIHIGKLSQLVMKQPCRLVSIGNSIFVIGKDCSTVVIDVENVRKNKMNGVMVCS 341

Query: 314 SIPRL-DSDVDVLSCKCVTI 331
           SIP+  D D+DV+SCK V I
Sbjct: 342 SIPKTWDDDIDVISCKSVAI 358

[Close]
BLAST of Cp4.1LG03g16620 vs. Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-17
Identity = 74/264 (28.03%), Postives = 110/264 (41.67%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           L+PGLPDD+ ++ L RVPR  H  L+ V KRW  L +   +YS R+   ++E W+Y   R
Sbjct: 78  LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLGGCSWCYFACEV 140
           D+  ++S    D  S  + W+ +  +P           EA+G    +L GC         
Sbjct: 138 DRDGKISWNTFDPIS--QLWQPLPPVPR-------EYSEAVGFGCAVLSGC--------- 197

Query: 141 LNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWEPCLDITNIPNEIEGSIVMDGKIYIR--- 200
               LY  GG     G       Y+  TNKW    D+        G  V++  +Y+    
Sbjct: 198 ---HLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLR-KRHFFGCCVINNCLYVAGGE 257

Query: 201 ----QRSVDSQAYALVYDPSSGTWEHSDSEMVSGWRGPAVIVDKTLYVLDQSSGTRLM-- 260
               QR++ S   A VYDP+   W        +      V+ DK  ++    S   +M  
Sbjct: 258 CEGIQRTLRS---AEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMSE 316

Query: 261 MWNNEVKEWIPVGRFSALLTRPPC 276
            ++ EV  W PV        R PC
Sbjct: 318 AYDPEVNSWSPVSDGMVAGWRNPC 316

[Close]
BLAST of Cp4.1LG03g16620 vs. Swiss-Prot
Match: FBK8_ARATH (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.5e-14
Identity = 60/226 (26.55%), Postives = 104/226 (46.02%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           LIP LPD++ + IL+R+PR  + +++ VS+RW+  V++ E YS R++    E W+Y L +
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFK---RKGM-GFEAMGRKLYLLGG------ 140
              +++  Y LD  S+K  W+++  +P   ++   RK + G   M    + +G       
Sbjct: 103 GHEDKLLWYALDPVSTK--WQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFL 162

Query: 141 --------CSWCYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWEPCLDITNIPN 200
                     +C  A   ++  LY IGGL  +      W  +DP  N W     +     
Sbjct: 163 GRRDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSCVWR-FDPILNSWSEVSSML-ASR 222

Query: 201 EIEGSIVMDGKIYI------RQRSVDSQAYALVYDPSSGTWEHSDS 223
               + V++ K+Y+       +  +     A VYDPS+  W    S
Sbjct: 223 AYSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPS 264

[Close]
BLAST of Cp4.1LG03g16620 vs. Swiss-Prot
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-13
Identity = 65/231 (28.14%), Postives = 100/231 (43.29%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           LIPGLPDD+    L+ VPR    ++ SV K+W+ +V S+E+ + R    + E W+Y L  
Sbjct: 39  LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVL-- 98

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLL---GGCSWCYFA 140
                     ++      RW+ M               + +G+KL  L    G +   F 
Sbjct: 99  ---------TMNAGGKDNRWEVM---------------DCLGQKLSSLPPMPGPAKTGFK 158

Query: 141 CEVLNEKLYAIGGLCSNSGDR-HSWDI--YDPCTNKWEPCLDITNIPNEIEGSIVMDGKI 200
             V++ KL  I G C  +G    S D+  YD C N W    D+  +         ++G +
Sbjct: 159 VVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADL-EVARYDFACAEVNGHV 218

Query: 201 Y-IRQRSVDSQAY--ALVYDPSSGTWEHSDSEMVSGWRGPAVIVDKTLYVL 243
           Y +    VD ++   A VYDP + TW   +S     W   A   +  LYV+
Sbjct: 219 YVVGGHGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVM 242

[Close]
BLAST of Cp4.1LG03g16620 vs. Swiss-Prot
Match: FBK96_ARATH (F-box/kelch-repeat protein At4g39240 OS=Arabidopsis thaliana GN=At4g39240 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-12
Identity = 84/323 (26.01%), Postives = 137/323 (42.41%), Query Frame = 1 

Query: 16  PTGRSLIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWI 75
           P+  S +  LPD+I+L+ L+R+P+ Y+  +  VSK ++ L+ S E Y  R      E  +
Sbjct: 28  PSCSSYLLLLPDEIILNCLARLPKCYYPVISLVSKTFRRLIASPEIYVERSLLRRTERVL 87

Query: 76  YALCRD-KSEQVSCYVLDL-----NSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLG 135
           Y + R   +E    Y L+      +S+  R   + S P  S    GM   A+  ++Y+LG
Sbjct: 88  YVVLRSHATETPRWYTLNFKPFGNDSNNHRLVPIPSFP--SIPCWGMSIVAIDSEIYVLG 147

Query: 136 GC------------SWCYFACEVL---------------NEKLYAIGGLCSNSGDRHSWD 195
           GC                  C +L               + KLY IGG   N    +  +
Sbjct: 148 GCIDNELVSTGFVVECPSHTCRLLPSMKQARGCAAVGFFDGKLYVIGG--CNPLSVNWVE 207

Query: 196 IYDPCTNKWEPCLDITNIP--NEIEGSIVMDGKIYIRQRSVDSQAYALVYDPSSGTWEHS 255
            +D  T  WE  L + N+   +    S  +D KIYI  R       + VYDP  GT E +
Sbjct: 208 AFDLKTQTWESGLGVNNVEMHDLTIRSFAIDDKIYIMDRK-----NSFVYDPKEGTLE-T 267

Query: 256 DSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLTRPPCQLVAV 304
           D  + + W   + ++D  +Y     S  R+ +++     W    R   L   P  +    
Sbjct: 268 DELLDTQWSVGSCVIDGKIYTF--GSKNRIWVFDPIAMVW---DRLKGLDDLPDKR---D 327

[Close]
BLAST of Cp4.1LG03g16620 vs. TrEMBL
Match: W9SHB4_9ROSA (F-box/kelch-repeat protein SKIP4 OS=Morus notabilis GN=L484_017293 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 2.1e-112
Identity = 209/345 (60.58%), Postives = 241/345 (69.86%), Query Frame = 1 

Query: 16  PTGRSLIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWI 75
           PT +SLI GLPDDI L  L+RVPRKYH  LK VS+R +DLV SEEWYS R K  L ETWI
Sbjct: 16  PTQQSLICGLPDDIALLCLARVPRKYHRILKCVSRRCRDLVCSEEWYSYRRKQKLDETWI 75

Query: 76  YALCRDKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLGGCSW-- 135
           YALCRDK EQ  CYVLD +S +R W  ++ LP  S KRKGM  E +G+K+YLLGGC W  
Sbjct: 76  YALCRDKLEQFCCYVLDPSSPRRCWMPIEGLPPRSLKRKGMCIEVLGKKIYLLGGCGWFE 135

Query: 136 --------------------------CYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPC 195
                                     CYFACEVLN K+YAIGGL S S D HSWD YDP 
Sbjct: 136 DATDEVYAYDASANAWSEDAPLSTARCYFACEVLNGKIYAIGGLSSKSSDSHSWDTYDPY 195

Query: 196 TNKWEPCLDITNIPNEIEGSIVMDGKIYIR--QRSVDSQAYALVYDPSSGTWEHSDSEMV 255
            + W    D+  +P EIE S VMDGKIYIR     V S  YA+VY+PSSG W+H+D++MV
Sbjct: 196 ASTWTSHSDLNIVP-EIEDSFVMDGKIYIRCCTSPVTSHVYAVVYEPSSGIWQHADADMV 255

Query: 256 SGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLTRPPCQLVAVGKRIV 315
           SGWRGPAV+VD TLYVLDQSSGTRLMMW  E +EW+PVGR S LLTRPPC+LVAVG  I 
Sbjct: 256 SGWRGPAVVVDGTLYVLDQSSGTRLMMWKKETREWVPVGRLSPLLTRPPCRLVAVGTSIF 315

Query: 316 VVGKGLSSVIFNVDNARTMEGLMVSSSIPRLDSDVDVLSCKCVTI 331
           V+GKGLS+V+ +V  A  +EG MVSSSIP L SD DV+SCKC+TI
Sbjct: 316 VIGKGLSTVMLDVGKAGNVEGAMVSSSIPNLSSDDDVISCKCLTI 359

[Close]
BLAST of Cp4.1LG03g16620 vs. TrEMBL
Match: A0A061E123_THECC (SKP1 interacting partner 4 OS=Theobroma cacao GN=TCM_005342 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.4e-110
Identity = 204/360 (56.67%), Postives = 257/360 (71.39%), Query Frame = 1 

Query: 1   MDSVLGPSGLEELVPPTGRSLIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEE 60
           MDS  G S        T   LI GLPDDI LS L+RVPR+YH  LK VS+RW+DLV+SEE
Sbjct: 1   MDSAEGGSDGNSQTEQTQEPLIGGLPDDIALSCLARVPREYHTVLKCVSRRWRDLVHSEE 60

Query: 61  WYSCREKNDLAETWIYALCRDKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEA 120
           W+  R K++L ETWIYALC+DK E+V CYVLD +SS+R WKQ++ LPS S +RKG+GFE 
Sbjct: 61  WHVYRRKHNLDETWIYALCQDKFERVCCYVLDPDSSRRSWKQLRGLPSLSLRRKGIGFEV 120

Query: 121 MGRKLY-LLG---------------------------GCSWCYFACEVLNEKLYAIGGLC 180
           +G+KLY + G                             + CYFACEVLN+K+YAIGGL 
Sbjct: 121 LGKKLYLMGGCRWSEDATDEAYCYDASIYAWTEANPLSTARCYFACEVLNQKIYAIGGLG 180

Query: 181 SNSGDRHSWDIYDPCTNKWEPCLDITNIPNEIEGSIVMDGKIYIR--QRSVDSQAYALVY 240
            NS   HSWD YDPCTN W+   D  NI  EIE S V+DGKIYIR  + +V S  YA+VY
Sbjct: 181 LNSNVPHSWDTYDPCTNNWKSFSD-PNIVPEIEDSFVLDGKIYIRCGRSAVTSHVYAVVY 240

Query: 241 DPSSGTWEHSDSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALL 300
           +PSS TW+H+D++M SGW+GPAV+++ TLYVLD+SSGTRL+MW  E++EW+P+GR S LL
Sbjct: 241 EPSSCTWQHADADMASGWQGPAVVLNGTLYVLDESSGTRLIMWQKEIREWVPLGRLSPLL 300

Query: 301 TRPPCQLVAVGKRIVVVGKGLSSVIFNVDNARTMEGLMVSSSIPRLDSDVDVLSCKCVTI 331
           TRPPC+LVAVGK I V+GKG S+V+ +V NA  M GLMVSSSIP+L S+ ++LSCKC++I
Sbjct: 301 TRPPCKLVAVGKSIYVIGKGRSTVVVDVSNAGNMGGLMVSSSIPKLTSNDEILSCKCLSI 359

[Close]
BLAST of Cp4.1LG03g16620 vs. TrEMBL
Match: A0A059C088_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00146 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 3.4e-102
Identity = 184/340 (54.12%), Postives = 237/340 (69.71%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           LIPGLPDD+ LS L+R+PRK+H  LK VSKRW+DLV S+EWYS R K+ L E WIYALCR
Sbjct: 21  LIPGLPDDVALSCLARLPRKFHTVLKCVSKRWRDLVCSDEWYSYRRKHKLDEAWIYALCR 80

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLGGCSW------- 140
           DK E+  CYVLD NSS+R WK ++ +P    KRKGMGFE +G+K+Y LGGC W       
Sbjct: 81  DKQERSFCYVLDPNSSRRCWKHIQGIPPQISKRKGMGFETLGKKIYFLGGCGWVEEPTDE 140

Query: 141 ---------------------CYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWE 200
                                CYFACEVL+EK+YAIGGL ++    +SWD YDP  N W 
Sbjct: 141 VYCYDVSANTWNETTSLSIARCYFACEVLDEKIYAIGGLGTDLSGPNSWDTYDPSINGWI 200

Query: 201 PCLDITNIPNEIEGSIVMDGKIYIR--QRSVDSQAYALVYDPSSGTWEHSDSEMVSGWRG 260
             +D   +P +IE S+V+DG+IYIR    S+ S  YA+VY+PS G+W+H D+++ SGW+G
Sbjct: 201 SHVDPNLVP-DIEDSVVLDGQIYIRCGGSSLLSHVYAIVYEPSRGSWQHVDADIASGWKG 260

Query: 261 PAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLTRPPCQLVAVGKRIVVVGKG 320
           PAV++D TLYVLDQSSG RLM W  E K+W+ V R S LLT+PPC+LVA+GKR+ V+GKG
Sbjct: 261 PAVVIDGTLYVLDQSSGLRLMKWQKESKDWVVVKRLSQLLTQPPCRLVAIGKRLFVIGKG 320

Query: 321 LSSVIFNVDNARTMEGLMVSSSIPRLDSDVDVLSCKCVTI 331
           LS+++F+VD +     +MV SSI +L SD DV+SCK V +
Sbjct: 321 LSTLVFDVDQSENAGRIMVGSSISKLTSDYDVISCKVVAL 359

[Close]
BLAST of Cp4.1LG03g16620 vs. TrEMBL
Match: A0A161ZLJ4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025187 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 5.8e-102
Identity = 185/338 (54.73%), Postives = 238/338 (70.41%), Query Frame = 1 

Query: 2   DSVLGPSGLEELVPPTGRSLIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEW 61
           DS LG +  +    P   S++ GLPDDI +  L+R+PRKYH +LK VSKRW++LV  +EW
Sbjct: 5   DSGLGTNQTD----PERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEW 64

Query: 62  YSCREKNDLAETWIYALCRDKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAM 121
            S R+K++LAETWIYALCRDKSE +S Y+LD N SK+ WK++++LP  S +RKGMGF+ +
Sbjct: 65  QSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVL 124

Query: 122 GRKLYLLGGCSW----------------------------CYFACEVLNEKLYAIGGLCS 181
           G K+YL+GGC W                            CYFACE L++K+YAIGG+ S
Sbjct: 125 GSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGS 184

Query: 182 NSGDRHSWDIYDPCTNKWEPCLDITNIPNEIEGSIVMDGKIYIRQ--RSVDSQAYALVYD 241
            S D HSWD +D CTN W+  +D  NI  +IE S+V+DGKIYIR    +V S  YA+VY+
Sbjct: 185 GSSDPHSWDTFDSCTNCWKSHVD-PNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYE 244

Query: 242 PSSGTWEHSDSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLT 301
           P +GTW+H DS+M SGWRGP V+VD   YVLDQSSGTRLM+W  + +EW+ VGR S LLT
Sbjct: 245 PLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLT 304

Query: 302 RPPCQLVAVGKRIVVVGKGLSSVIFNVDNAR-TMEGLM 309
           RPPCQLVA+GK I VVGKGLS+V+FNV NA  +M+GL+
Sbjct: 305 RPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337

[Close]
BLAST of Cp4.1LG03g16620 vs. TrEMBL
Match: A0A059BZR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00142 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 5.8e-102
Identity = 184/340 (54.12%), Postives = 237/340 (69.71%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           LIPGLPDDI +S L+R+PRK+H  LK VSKRW+DLV S+EWYS R K+ L E WIYALCR
Sbjct: 21  LIPGLPDDIAISCLARLPRKFHTVLKCVSKRWRDLVCSDEWYSYRRKHKLDEAWIYALCR 80

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLGGCSW------- 140
           DK E+  CYVLD NSS+R WK ++ +P    KRKGMGFE +G+K+Y LGGC W       
Sbjct: 81  DKQERSFCYVLDPNSSQRCWKHIQGIPPQISKRKGMGFETLGKKIYFLGGCGWVEEPTDE 140

Query: 141 ---------------------CYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWE 200
                                CYFACEVL+EK+YAIGGL ++    +SWD YDP  N W 
Sbjct: 141 VYCYDVSANTWNETTSLSIARCYFACEVLDEKIYAIGGLGTDLSGPNSWDTYDPSINGWI 200

Query: 201 PCLDITNIPNEIEGSIVMDGKIYIR--QRSVDSQAYALVYDPSSGTWEHSDSEMVSGWRG 260
             +D   +P +IE S+V+DG+IYIR    S+ S  YA+VY+PS G+W+H D+++ SGW+G
Sbjct: 201 SHVDPNLVP-DIEDSVVLDGQIYIRCGGSSLLSHVYAIVYEPSRGSWQHVDADIASGWKG 260

Query: 261 PAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLTRPPCQLVAVGKRIVVVGKG 320
           PAV++D TLYVLDQSSG RLM W  E K+W+ V R S LLT+PPC+LVA+GKR+ V+GKG
Sbjct: 261 PAVVIDGTLYVLDQSSGLRLMKWQKESKDWVVVKRLSQLLTQPPCRLVAIGKRLFVIGKG 320

Query: 321 LSSVIFNVDNARTMEGLMVSSSIPRLDSDVDVLSCKCVTI 331
           LS+++F+VD +     +MV SSI +L SD DV+SCK V +
Sbjct: 321 LSTLVFDVDQSENAGRIMVGSSISKLTSDYDVISCKVVAL 359

[Close]
BLAST of Cp4.1LG03g16620 vs. TAIR10
Match: AT3G61350.1 (AT3G61350.1 SKP1 interacting partner 4)

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-51
Identity = 100/200 (50.00%), Postives = 131/200 (65.50%), Query Frame = 1 

Query: 134 CYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWEPCLDITNIPNEIEGSIVMDGK 193
           CYFACE L+ K+ AIGGL  N   + +WDIYDP T   + C D+  +P E+E S VMDG+
Sbjct: 162 CYFACETLDGKIIAIGGLGLNPNAKRTWDIYDPLTRTCKSCSDVNIVP-EMEDSFVMDGR 221

Query: 194 IYIRQRSVDSQAYALVYDPSSGTWEHSDSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMW 253
           IYIR     S     VY  SSG WE  D +M SGWRGPAV+V   LYVLDQ+ G +L MW
Sbjct: 222 IYIRGGVGGSST--AVYSASSGIWERMDDDMASGWRGPAVVVAGDLYVLDQTFGAKLTMW 281

Query: 254 NNEVKEWIPVGRFSALLTRPPCQLVAVGKRIVVVGKGLSSVIFNVDNAR--TMEGLMVSS 313
             + + WI +G+ S L+ + PC+LV++G  I V+GK  S+V+ +V+N R   M G+MV S
Sbjct: 282 CKDTRMWIHIGKLSQLVMKQPCRLVSIGNSIFVIGKDCSTVVIDVENVRKNKMNGVMVCS 341

Query: 314 SIPRL-DSDVDVLSCKCVTI 331
           SIP+  D D+DV+SCK V I
Sbjct: 342 SIPKTWDDDIDVISCKSVAI 358

[Close]
BLAST of Cp4.1LG03g16620 vs. TAIR10
Match: AT1G55270.1 (AT1G55270.1 Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 9.3e-19
Identity = 74/264 (28.03%), Postives = 110/264 (41.67%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           L+PGLPDD+ ++ L RVPR  H  L+ V KRW  L +   +YS R+   ++E W+Y   R
Sbjct: 78  LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLGGCSWCYFACEV 140
           D+  ++S    D  S  + W+ +  +P           EA+G    +L GC         
Sbjct: 138 DRDGKISWNTFDPIS--QLWQPLPPVPR-------EYSEAVGFGCAVLSGC--------- 197

Query: 141 LNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWEPCLDITNIPNEIEGSIVMDGKIYIR--- 200
               LY  GG     G       Y+  TNKW    D+        G  V++  +Y+    
Sbjct: 198 ---HLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLR-KRHFFGCCVINNCLYVAGGE 257

Query: 201 ----QRSVDSQAYALVYDPSSGTWEHSDSEMVSGWRGPAVIVDKTLYVLDQSSGTRLM-- 260
               QR++ S   A VYDP+   W        +      V+ DK  ++    S   +M  
Sbjct: 258 CEGIQRTLRS---AEVYDPNKNRWSFIADMSTAMVPLIGVVYDKKWFLKGLGSHQLVMSE 316

Query: 261 MWNNEVKEWIPVGRFSALLTRPPC 276
            ++ EV  W PV        R PC
Sbjct: 318 AYDPEVNSWSPVSDGMVAGWRNPC 316

[Close]
BLAST of Cp4.1LG03g16620 vs. TAIR10
Match: AT1G22040.1 (AT1G22040.1 Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-15
Identity = 60/226 (26.55%), Postives = 104/226 (46.02%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           LIP LPD++ + IL+R+PR  + +++ VS+RW+  V++ E YS R++    E W+Y L +
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFK---RKGM-GFEAMGRKLYLLGG------ 140
              +++  Y LD  S+K  W+++  +P   ++   RK + G   M    + +G       
Sbjct: 103 GHEDKLLWYALDPVSTK--WQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFL 162

Query: 141 --------CSWCYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWEPCLDITNIPN 200
                     +C  A   ++  LY IGGL  +      W  +DP  N W     +     
Sbjct: 163 GRRDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSCVWR-FDPILNSWSEVSSML-ASR 222

Query: 201 EIEGSIVMDGKIYI------RQRSVDSQAYALVYDPSSGTWEHSDS 223
               + V++ K+Y+       +  +     A VYDPS+  W    S
Sbjct: 223 AYSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPS 264

[Close]
BLAST of Cp4.1LG03g16620 vs. TAIR10
Match: AT1G67480.1 (AT1G67480.1 Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 6.3e-15
Identity = 65/231 (28.14%), Postives = 100/231 (43.29%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           LIPGLPDD+    L+ VPR    ++ SV K+W+ +V S+E+ + R    + E W+Y L  
Sbjct: 39  LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVL-- 98

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLL---GGCSWCYFA 140
                     ++      RW+ M               + +G+KL  L    G +   F 
Sbjct: 99  ---------TMNAGGKDNRWEVM---------------DCLGQKLSSLPPMPGPAKTGFK 158

Query: 141 CEVLNEKLYAIGGLCSNSGDR-HSWDI--YDPCTNKWEPCLDITNIPNEIEGSIVMDGKI 200
             V++ KL  I G C  +G    S D+  YD C N W    D+  +         ++G +
Sbjct: 159 VVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADL-EVARYDFACAEVNGHV 218

Query: 201 Y-IRQRSVDSQAY--ALVYDPSSGTWEHSDSEMVSGWRGPAVIVDKTLYVL 243
           Y +    VD ++   A VYDP + TW   +S     W   A   +  LYV+
Sbjct: 219 YVVGGHGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVM 242

[Close]
BLAST of Cp4.1LG03g16620 vs. TAIR10
Match: AT4G39240.1 (AT4G39240.1 Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-13
Identity = 84/323 (26.01%), Postives = 137/323 (42.41%), Query Frame = 1 

Query: 16  PTGRSLIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWI 75
           P+  S +  LPD+I+L+ L+R+P+ Y+  +  VSK ++ L+ S E Y  R      E  +
Sbjct: 28  PSCSSYLLLLPDEIILNCLARLPKCYYPVISLVSKTFRRLIASPEIYVERSLLRRTERVL 87

Query: 76  YALCRD-KSEQVSCYVLDL-----NSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLG 135
           Y + R   +E    Y L+      +S+  R   + S P  S    GM   A+  ++Y+LG
Sbjct: 88  YVVLRSHATETPRWYTLNFKPFGNDSNNHRLVPIPSFP--SIPCWGMSIVAIDSEIYVLG 147

Query: 136 GC------------SWCYFACEVL---------------NEKLYAIGGLCSNSGDRHSWD 195
           GC                  C +L               + KLY IGG   N    +  +
Sbjct: 148 GCIDNELVSTGFVVECPSHTCRLLPSMKQARGCAAVGFFDGKLYVIGG--CNPLSVNWVE 207

Query: 196 IYDPCTNKWEPCLDITNIP--NEIEGSIVMDGKIYIRQRSVDSQAYALVYDPSSGTWEHS 255
            +D  T  WE  L + N+   +    S  +D KIYI  R       + VYDP  GT E +
Sbjct: 208 AFDLKTQTWESGLGVNNVEMHDLTIRSFAIDDKIYIMDRK-----NSFVYDPKEGTLE-T 267

Query: 256 DSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLTRPPCQLVAV 304
           D  + + W   + ++D  +Y     S  R+ +++     W    R   L   P  +    
Sbjct: 268 DELLDTQWSVGSCVIDGKIYTF--GSKNRIWVFDPIAMVW---DRLKGLDDLPDKR---D 327

[Close]
BLAST of Cp4.1LG03g16620 vs. NCBI nr
Match: gi|703135669|ref|XP_010105945.1| (F-box/kelch-repeat protein SKIP4 [Morus notabilis])

HSP 1 Score: 413.7 bits (1062), Expect = 3.0e-112
Identity = 209/345 (60.58%), Postives = 241/345 (69.86%), Query Frame = 1 

Query: 16  PTGRSLIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWI 75
           PT +SLI GLPDDI L  L+RVPRKYH  LK VS+R +DLV SEEWYS R K  L ETWI
Sbjct: 16  PTQQSLICGLPDDIALLCLARVPRKYHRILKCVSRRCRDLVCSEEWYSYRRKQKLDETWI 75

Query: 76  YALCRDKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLGGCSW-- 135
           YALCRDK EQ  CYVLD +S +R W  ++ LP  S KRKGM  E +G+K+YLLGGC W  
Sbjct: 76  YALCRDKLEQFCCYVLDPSSPRRCWMPIEGLPPRSLKRKGMCIEVLGKKIYLLGGCGWFE 135

Query: 136 --------------------------CYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPC 195
                                     CYFACEVLN K+YAIGGL S S D HSWD YDP 
Sbjct: 136 DATDEVYAYDASANAWSEDAPLSTARCYFACEVLNGKIYAIGGLSSKSSDSHSWDTYDPY 195

Query: 196 TNKWEPCLDITNIPNEIEGSIVMDGKIYIR--QRSVDSQAYALVYDPSSGTWEHSDSEMV 255
            + W    D+  +P EIE S VMDGKIYIR     V S  YA+VY+PSSG W+H+D++MV
Sbjct: 196 ASTWTSHSDLNIVP-EIEDSFVMDGKIYIRCCTSPVTSHVYAVVYEPSSGIWQHADADMV 255

Query: 256 SGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLTRPPCQLVAVGKRIV 315
           SGWRGPAV+VD TLYVLDQSSGTRLMMW  E +EW+PVGR S LLTRPPC+LVAVG  I 
Sbjct: 256 SGWRGPAVVVDGTLYVLDQSSGTRLMMWKKETREWVPVGRLSPLLTRPPCRLVAVGTSIF 315

Query: 316 VVGKGLSSVIFNVDNARTMEGLMVSSSIPRLDSDVDVLSCKCVTI 331
           V+GKGLS+V+ +V  A  +EG MVSSSIP L SD DV+SCKC+TI
Sbjct: 316 VIGKGLSTVMLDVGKAGNVEGAMVSSSIPNLSSDDDVISCKCLTI 359

[Close]
BLAST of Cp4.1LG03g16620 vs. NCBI nr
Match: gi|590722167|ref|XP_007051821.1| (SKP1 interacting partner 4 [Theobroma cacao])

HSP 1 Score: 406.0 bits (1042), Expect = 6.3e-110
Identity = 204/360 (56.67%), Postives = 257/360 (71.39%), Query Frame = 1 

Query: 1   MDSVLGPSGLEELVPPTGRSLIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEE 60
           MDS  G S        T   LI GLPDDI LS L+RVPR+YH  LK VS+RW+DLV+SEE
Sbjct: 1   MDSAEGGSDGNSQTEQTQEPLIGGLPDDIALSCLARVPREYHTVLKCVSRRWRDLVHSEE 60

Query: 61  WYSCREKNDLAETWIYALCRDKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEA 120
           W+  R K++L ETWIYALC+DK E+V CYVLD +SS+R WKQ++ LPS S +RKG+GFE 
Sbjct: 61  WHVYRRKHNLDETWIYALCQDKFERVCCYVLDPDSSRRSWKQLRGLPSLSLRRKGIGFEV 120

Query: 121 MGRKLY-LLG---------------------------GCSWCYFACEVLNEKLYAIGGLC 180
           +G+KLY + G                             + CYFACEVLN+K+YAIGGL 
Sbjct: 121 LGKKLYLMGGCRWSEDATDEAYCYDASIYAWTEANPLSTARCYFACEVLNQKIYAIGGLG 180

Query: 181 SNSGDRHSWDIYDPCTNKWEPCLDITNIPNEIEGSIVMDGKIYIR--QRSVDSQAYALVY 240
            NS   HSWD YDPCTN W+   D  NI  EIE S V+DGKIYIR  + +V S  YA+VY
Sbjct: 181 LNSNVPHSWDTYDPCTNNWKSFSD-PNIVPEIEDSFVLDGKIYIRCGRSAVTSHVYAVVY 240

Query: 241 DPSSGTWEHSDSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALL 300
           +PSS TW+H+D++M SGW+GPAV+++ TLYVLD+SSGTRL+MW  E++EW+P+GR S LL
Sbjct: 241 EPSSCTWQHADADMASGWQGPAVVLNGTLYVLDESSGTRLIMWQKEIREWVPLGRLSPLL 300

Query: 301 TRPPCQLVAVGKRIVVVGKGLSSVIFNVDNARTMEGLMVSSSIPRLDSDVDVLSCKCVTI 331
           TRPPC+LVAVGK I V+GKG S+V+ +V NA  M GLMVSSSIP+L S+ ++LSCKC++I
Sbjct: 301 TRPPCKLVAVGKSIYVIGKGRSTVVVDVSNAGNMGGLMVSSSIPKLTSNDEILSCKCLSI 359

[Close]
BLAST of Cp4.1LG03g16620 vs. NCBI nr
Match: gi|702334299|ref|XP_010055142.1| (PREDICTED: F-box/kelch-repeat protein SKIP4-like [Eucalyptus grandis])

HSP 1 Score: 379.8 bits (974), Expect = 4.9e-102
Identity = 184/340 (54.12%), Postives = 237/340 (69.71%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           LIPGLPDD+ LS L+R+PRK+H  LK VSKRW+DLV S+EWYS R K+ L E WIYALCR
Sbjct: 21  LIPGLPDDVALSCLARLPRKFHTVLKCVSKRWRDLVCSDEWYSYRRKHKLDEAWIYALCR 80

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLGGCSW------- 140
           DK E+  CYVLD NSS+R WK ++ +P    KRKGMGFE +G+K+Y LGGC W       
Sbjct: 81  DKQERSFCYVLDPNSSRRCWKHIQGIPPQISKRKGMGFETLGKKIYFLGGCGWVEEPTDE 140

Query: 141 ---------------------CYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWE 200
                                CYFACEVL+EK+YAIGGL ++    +SWD YDP  N W 
Sbjct: 141 VYCYDVSANTWNETTSLSIARCYFACEVLDEKIYAIGGLGTDLSGPNSWDTYDPSINGWI 200

Query: 201 PCLDITNIPNEIEGSIVMDGKIYIR--QRSVDSQAYALVYDPSSGTWEHSDSEMVSGWRG 260
             +D   +P +IE S+V+DG+IYIR    S+ S  YA+VY+PS G+W+H D+++ SGW+G
Sbjct: 201 SHVDPNLVP-DIEDSVVLDGQIYIRCGGSSLLSHVYAIVYEPSRGSWQHVDADIASGWKG 260

Query: 261 PAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLTRPPCQLVAVGKRIVVVGKG 320
           PAV++D TLYVLDQSSG RLM W  E K+W+ V R S LLT+PPC+LVA+GKR+ V+GKG
Sbjct: 261 PAVVIDGTLYVLDQSSGLRLMKWQKESKDWVVVKRLSQLLTQPPCRLVAIGKRLFVIGKG 320

Query: 321 LSSVIFNVDNARTMEGLMVSSSIPRLDSDVDVLSCKCVTI 331
           LS+++F+VD +     +MV SSI +L SD DV+SCK V +
Sbjct: 321 LSTLVFDVDQSENAGRIMVGSSISKLTSDYDVISCKVVAL 359

[Close]
BLAST of Cp4.1LG03g16620 vs. NCBI nr
Match: gi|1021030327|gb|KZM88112.1| (hypothetical protein DCAR_025187 [Daucus carota subsp. sativus])

HSP 1 Score: 379.0 bits (972), Expect = 8.3e-102
Identity = 185/338 (54.73%), Postives = 238/338 (70.41%), Query Frame = 1 

Query: 2   DSVLGPSGLEELVPPTGRSLIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEW 61
           DS LG +  +    P   S++ GLPDDI +  L+R+PRKYH +LK VSKRW++LV  +EW
Sbjct: 5   DSGLGTNQTD----PERSSILYGLPDDIAILCLARIPRKYHASLKCVSKRWRELVCGQEW 64

Query: 62  YSCREKNDLAETWIYALCRDKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAM 121
            S R+K++LAETWIYALCRDKSE +S Y+LD N SK+ WK++++LP  S +RKGMGF+ +
Sbjct: 65  QSYRQKHNLAETWIYALCRDKSENLSFYMLDPNMSKKGWKRVQNLPPRSLRRKGMGFDVL 124

Query: 122 GRKLYLLGGCSW----------------------------CYFACEVLNEKLYAIGGLCS 181
           G K+YL+GGC W                            CYFACE L++K+YAIGG+ S
Sbjct: 125 GSKIYLMGGCGWIEDATDEVYCYDAATNTWNEAPPLSTARCYFACEALDDKMYAIGGIGS 184

Query: 182 NSGDRHSWDIYDPCTNKWEPCLDITNIPNEIEGSIVMDGKIYIRQ--RSVDSQAYALVYD 241
            S D HSWD +D CTN W+  +D  NI  +IE S+V+DGKIYIR    +V S  YA+VY+
Sbjct: 185 GSSDPHSWDTFDSCTNCWKSHVD-PNIVPDIEDSVVLDGKIYIRCGISAVSSHVYAVVYE 244

Query: 242 PSSGTWEHSDSEMVSGWRGPAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLT 301
           P +GTW+H DS+M SGWRGP V+VD   YVLDQSSGTRLM+W  + +EW+ VGR S LLT
Sbjct: 245 PLNGTWQHVDSDMASGWRGPGVVVDGNFYVLDQSSGTRLMLWKKDTREWVAVGRLSPLLT 304

Query: 302 RPPCQLVAVGKRIVVVGKGLSSVIFNVDNAR-TMEGLM 309
           RPPCQLVA+GK I VVGKGLS+V+FNV NA  +M+GL+
Sbjct: 305 RPPCQLVAIGKSIYVVGKGLSTVVFNVGNAAGSMDGLL 337

[Close]
BLAST of Cp4.1LG03g16620 vs. NCBI nr
Match: gi|702334296|ref|XP_010055141.1| (PREDICTED: F-box/kelch-repeat protein SKIP4-like [Eucalyptus grandis])

HSP 1 Score: 379.0 bits (972), Expect = 8.3e-102
Identity = 184/340 (54.12%), Postives = 237/340 (69.71%), Query Frame = 1 

Query: 21  LIPGLPDDIVLSILSRVPRKYHHNLKSVSKRWKDLVNSEEWYSCREKNDLAETWIYALCR 80
           LIPGLPDDI +S L+R+PRK+H  LK VSKRW+DLV S+EWYS R K+ L E WIYALCR
Sbjct: 21  LIPGLPDDIAISCLARLPRKFHTVLKCVSKRWRDLVCSDEWYSYRRKHKLDEAWIYALCR 80

Query: 81  DKSEQVSCYVLDLNSSKRRWKQMKSLPSCSFKRKGMGFEAMGRKLYLLGGCSW------- 140
           DK E+  CYVLD NSS+R WK ++ +P    KRKGMGFE +G+K+Y LGGC W       
Sbjct: 81  DKQERSFCYVLDPNSSQRCWKHIQGIPPQISKRKGMGFETLGKKIYFLGGCGWVEEPTDE 140

Query: 141 ---------------------CYFACEVLNEKLYAIGGLCSNSGDRHSWDIYDPCTNKWE 200
                                CYFACEVL+EK+YAIGGL ++    +SWD YDP  N W 
Sbjct: 141 VYCYDVSANTWNETTSLSIARCYFACEVLDEKIYAIGGLGTDLSGPNSWDTYDPSINGWI 200

Query: 201 PCLDITNIPNEIEGSIVMDGKIYIR--QRSVDSQAYALVYDPSSGTWEHSDSEMVSGWRG 260
             +D   +P +IE S+V+DG+IYIR    S+ S  YA+VY+PS G+W+H D+++ SGW+G
Sbjct: 201 SHVDPNLVP-DIEDSVVLDGQIYIRCGGSSLLSHVYAIVYEPSRGSWQHVDADIASGWKG 260

Query: 261 PAVIVDKTLYVLDQSSGTRLMMWNNEVKEWIPVGRFSALLTRPPCQLVAVGKRIVVVGKG 320
           PAV++D TLYVLDQSSG RLM W  E K+W+ V R S LLT+PPC+LVA+GKR+ V+GKG
Sbjct: 261 PAVVIDGTLYVLDQSSGLRLMKWQKESKDWVVVKRLSQLLTQPPCRLVAIGKRLFVIGKG 320

Query: 321 LSSVIFNVDNARTMEGLMVSSSIPRLDSDVDVLSCKCVTI 331
           LS+++F+VD +     +MV SSI +L SD DV+SCK V +
Sbjct: 321 LSTLVFDVDQSENAGRIMVGSSISKLTSDYDVISCKVVAL 359

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g16620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKIP4_ARATH2.5e-5050.00F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1[more]
FBK22_ARATH1.7e-1728.03F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 S... [more]
FBK8_ARATH8.5e-1426.55F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 S... [more]
FBK28_ARATH1.1e-1328.14F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 S... [more]
FBK96_ARATH3.6e-1226.01F-box/kelch-repeat protein At4g39240 OS=Arabidopsis thaliana GN=At4g39240 PE=2 S... [more]
BLAST of Cp4.1LG03g16620 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SHB4_9ROSA2.1e-11260.58F-box/kelch-repeat protein SKIP4 OS=Morus notabilis GN=L484_017293 PE=4 SV=1[more]
A0A061E123_THECC4.4e-11056.67SKP1 interacting partner 4 OS=Theobroma cacao GN=TCM_005342 PE=4 SV=1[more]
A0A059C088_EUCGR3.4e-10254.12Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00146 PE=4 SV=1[more]
A0A161ZLJ4_DAUCA5.8e-10254.73Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025187 PE=4 SV=1[more]
A0A059BZR0_EUCGR5.8e-10254.12Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00142 PE=4 SV=1[more]
BLAST of Cp4.1LG03g16620 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61350.11.4e-5150.00 SKP1 interacting partner 4[more]
AT1G55270.19.3e-1928.03 Galactose oxidase/kelch repeat superfamily protein[more]
AT1G22040.14.8e-1526.55 Galactose oxidase/kelch repeat superfamily protein[more]
AT1G67480.16.3e-1528.14 Galactose oxidase/kelch repeat superfamily protein[more]
AT4G39240.12.0e-1326.01 Galactose oxidase/kelch repeat superfamily protein[more]
BLAST of Cp4.1LG03g16620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703135669|ref|XP_010105945.1|3.0e-11260.58F-box/kelch-repeat protein SKIP4 [Morus notabilis][more]
gi|590722167|ref|XP_007051821.1|6.3e-11056.67SKP1 interacting partner 4 [Theobroma cacao][more]
gi|702334299|ref|XP_010055142.1|4.9e-10254.12PREDICTED: F-box/kelch-repeat protein SKIP4-like [Eucalyptus grandis][more]
gi|1021030327|gb|KZM88112.1|8.3e-10254.73hypothetical protein DCAR_025187 [Daucus carota subsp. sativus][more]
gi|702334296|ref|XP_010055141.1|8.3e-10254.12PREDICTED: F-box/kelch-repeat protein SKIP4-like [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR015916Galactose oxidase, beta-propeller
IPR006652Kelch_1
IPR001810F-box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g16620.1Cp4.1LG03g16620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 22..58
score: 4.
IPR001810F-box domainSMARTSM00256fbox_2coord: 25..65
score: 3.
IPR001810F-box domainPROFILEPS50181FBOXcoord: 19..65
score: 9
IPR001810F-box domainunknownSSF81383F-box domaincoord: 15..62
score: 2.4
IPR006652Kelch repeat type 1PFAMPF01344Kelch_1coord: 133..174
score: 1.
IPR015916Galactose oxidase, beta-propellerGENE3DG3DSA:2.130.10.80coord: 54..288
score: 8.5
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 18..53
score: 9.
NoneNo IPR availablePANTHERPTHR24414FAMILY NOT NAMEDcoord: 11..280
score: 7.8
NoneNo IPR availablePANTHERPTHR24414:SF23F-BOX/KELCH-REPEAT PROTEIN SKIP4-RELATEDcoord: 11..280
score: 7.8
NoneNo IPR availableunknownSSF117281Kelch motifcoord: 73..292
score: 6.67

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g16620Cucsa.258330Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g16620CmaCh14G020350Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g16620CmoCh14G020940Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g16620Cla021240Watermelon (97103) v1cpewmB613
Cp4.1LG03g16620Csa3G122440Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g16620MELO3C006114Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g16620ClCG05G001570Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g16620CSPI03G08820Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g16620Lsi05G020350Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g16620MELO3C006114.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g16620CsaV3_3G008960Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g16620Bhi01G000259Wax gourdcpewgoB0788
Cp4.1LG03g16620Carg21005Silver-seed gourdcarcpeB0691
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g16620Cucurbita maxima (Rimu)cmacpeB639
Cp4.1LG03g16620Cucurbita maxima (Rimu)cmacpeB831
Cp4.1LG03g16620Cucurbita maxima (Rimu)cmacpeB833
Cp4.1LG03g16620Cucurbita moschata (Rifu)cmocpeB589
Cp4.1LG03g16620Cucurbita moschata (Rifu)cmocpeB784
Cp4.1LG03g16620Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g16620Watermelon (Charleston Gray)cpewcgB556
Cp4.1LG03g16620Watermelon (97103) v1cpewmB612
Cp4.1LG03g16620Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g16620Silver-seed gourdcarcpeB0536
Cp4.1LG03g16620Silver-seed gourdcarcpeB0922
Cp4.1LG03g16620Wax gourdcpewgoB0774
Cp4.1LG03g16620Cucurbita pepo (Zucchini)cpecpeB052
Cp4.1LG03g16620Cucurbita pepo (Zucchini)cpecpeB242
Cp4.1LG03g16620Cucurbita pepo (Zucchini)cpecpeB479
Cp4.1LG03g16620Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g16620Cucurbita pepo (Zucchini)cpecpeB488