Cp4.1LG03g16430 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g16430
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP2/ERF domain-containing transcription factor
LocationCp4.1LG03 : 13335187 .. 13336068 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGCTATGGAATTCCAGTACCCATCAATGGGGCGAGTTTGTTCCGCCGGAATTAAGTTCAGAGAAGTTCGGACCATCACCGACAAACCGGCGACGGAGACCAAGCTCGTCCGAATTACCTACACCGACGGCGATGCGACCGATTCGTCCAGTGGTGAAGACGAAGAGCCAAGCCTCATCCGCCACGTCAAACGCCACGTGACTGAGATCAGGCTTCTCACTACCGATTGTTCCAAAAAGCCACTGCCGCCGAAATCGAGAGTTAAGCCGCCGTCGAATTCGGAGAGCCATAGAAAGTTTAGAGGAGTTCGGCGGCGCCCGTGGGGCAAATGGGCAGCGGAGATCAGAGACCCTTTACGGCGAACAAGAGTTTGGCTTGGAACCTACGACACGGCGGAGGAAGCCGCTGTCGTTTACGACCGTGCCGCCGTCCGCCTTAGAGGTCCCAACGCTCTTACCAATTTCGTCGCCGAAGCTCCCACTTCCAAAACAACTGTTGTCACATACCTCCCTCCACCATCACCACCGCCACCGCCGGAAAATCATAGTACGGCAGCGGTGGGAGTTTCCTACAGCAAAGAATCCCGGAATCACTGCTCTCCGACTTCCGTCTTGAGATTAGAAGAACAAAATTGGAGACCCATTGAGCATCTAAGCGAAGAATCAGGATTAGAAGAGGAATTCAATTGGTTATATGATCGGAACTCCAACAGTTTCTTGTTCAATCTAAGAAGCCCACAACCGTTATTTTCCGACCAAATGGAACTGGAAATCCCGAAATGGGAAGATTTCGGGGACATTTCGGTGGATTTCGATTCATGTAAATGGGACGTAGAGAATTATTTTCAAGATCCAAGCTTTAGTATCGCATTGACTGACTGA

mRNA sequence

AGGGCTATGGAATTCCAGTACCCATCAATGGGGCGAGTTTGTTCCGCCGGAATTAAGTTCAGAGAAGTTCGGACCATCACCGACAAACCGGCGACGGAGACCAAGCTCGTCCGAATTACCTACACCGACGGCGATGCGACCGATTCGTCCAGTGGTGAAGACGAAGAGCCAAGCCTCATCCGCCACGTCAAACGCCACGTGACTGAGATCAGGCTTCTCACTACCGATTCGGTGGGAGTTTCCTACAGCAAAGAATCCCGGAATCACTGCTCTCCGACTTCCGTCTTGAGATTAGAAGAACAAAATTGGAGACCCATTGAGCATCTAAGCGAAGAATCAGGATTAGAAGAGGAATTCAATTGGTTATATGATCGGAACTCCAACAGTTTCTTGTTCAATCTAAGAAGCCCACAACCGTTATTTTCCGACCAAATGGAACTGGAAATCCCGAAATGGGAAGATTTCGGGGACATTTCGGTGGATTTCGATTCATGTAAATGGGACGTAGAGAATTATTTTCAAGATCCAAGCTTTAGTATCGCATTGACTGACTGA

Coding sequence (CDS)

AGGGCTATGGAATTCCAGTACCCATCAATGGGGCGAGTTTGTTCCGCCGGAATTAAGTTCAGAGAAGTTCGGACCATCACCGACAAACCGGCGACGGAGACCAAGCTCGTCCGAATTACCTACACCGACGGCGATGCGACCGATTCGTCCAGTGGTGAAGACGAAGAGCCAAGCCTCATCCGCCACGTCAAACGCCACGTGACTGAGATCAGGCTTCTCACTACCGATTCGGTGGGAGTTTCCTACAGCAAAGAATCCCGGAATCACTGCTCTCCGACTTCCGTCTTGAGATTAGAAGAACAAAATTGGAGACCCATTGAGCATCTAAGCGAAGAATCAGGATTAGAAGAGGAATTCAATTGGTTATATGATCGGAACTCCAACAGTTTCTTGTTCAATCTAAGAAGCCCACAACCGTTATTTTCCGACCAAATGGAACTGGAAATCCCGAAATGGGAAGATTTCGGGGACATTTCGGTGGATTTCGATTCATGTAAATGGGACGTAGAGAATTATTTTCAAGATCCAAGCTTTAGTATCGCATTGACTGACTGA

Protein sequence

RAMEFQYPSMGRVCSAGIKFREVRTITDKPATETKLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTEIRLLTTDSVGVSYSKESRNHCSPTSVLRLEEQNWRPIEHLSEESGLEEEFNWLYDRNSNSFLFNLRSPQPLFSDQMELEIPKWEDFGDISVDFDSCKWDVENYFQDPSFSIALTD
Homology
[Close]
BLAST of Cp4.1LG03g16430 vs. TrEMBL
Match: E5GCG6_CUCME (AP2/ERF domain-containing transcription factor OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-44
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 1 

Query: 80  VSYSKESRNHCSPTSVLRLEEQNWRPIEH-LSEESGLEEEFNWLYDRNSNSFLFNLRSPQ 139
           VS +KESR+ CSPTSVLRLEE+NWR I+H LSEESGLE+EFNWLYDRNSNSFLFNL SPQ
Sbjct: 174 VSETKESRSVCSPTSVLRLEEENWRAIDHYLSEESGLEDEFNWLYDRNSNSFLFNLISPQ 233

Query: 140 PLFSDQMELEIPKWEDFGDISVDFDSCKWDVENYFQDPSFSIA 182
           P+FSDQME+ IPKWEDFGDISVDFDSCKWDVENYFQDP+FSIA
Sbjct: 234 PIFSDQMEMTIPKWEDFGDISVDFDSCKWDVENYFQDPNFSIA 276

[Close]
BLAST of Cp4.1LG03g16430 vs. TrEMBL
Match: A0A0A0L397_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120390 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 86/106 (81.13%), Postives = 98/106 (92.45%), Query Frame = 1 

Query: 77  SVGVSYSKESRNHCSPTSVLRLEEQNWRPIEH-LSEESGLEEEFNWLYDRNSNSFLFNLR 136
           +  VS +KESR+ CSPTSVLRLE++NWR I+H LSEESGLE+EFNWLYDRNSNSFLFNL 
Sbjct: 178 AAAVSETKESRSICSPTSVLRLEDENWRAIDHYLSEESGLEDEFNWLYDRNSNSFLFNLI 237

Query: 137 SPQPLFSDQMELEIPKWEDFGDISVDFDSCKWDVENYFQDPSFSIA 182
           +PQP+FSDQ+E+ IPKWEDFGDISVDFDSCKWDVENYFQDP+FSIA
Sbjct: 238 NPQPIFSDQLEITIPKWEDFGDISVDFDSCKWDVENYFQDPNFSIA 283

[Close]
BLAST of Cp4.1LG03g16430 vs. TrEMBL
Match: W9R6S9_9ROSA (Pathogenesis-related protein transcriptional activator PTI6 OS=Morus notabilis GN=L484_018807 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 

Query: 12 RVCSAGIKFREVRTITDKP--ATETKLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTE 71
          R+    IK+ E +T T KP    + KL+RI  TD DATDSSS ++ EPS++R VKRH+ E
Sbjct: 6  RILDREIKYSEHKTTTRKPMAGAQQKLIRIIITDADATDSSSDDESEPSVLRVVKRHIKE 65

[Close]
BLAST of Cp4.1LG03g16430 vs. TAIR10
Match: AT3G61630.1 (AT3G61630.1 cytokinin response factor 6)

HSP 1 Score: 47.8 bits (112), Expect = 8.6e-06
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 1 

Query: 18 IKFREVRTITDKPATET----KLVRITYTDGDATDSSSGEDE--EPSLIRHVKRHVTEIR 77
          +KF E RT+T+  AT +    +LVRIT TD  ATDSSS +D+    +++  VKR+V EIR
Sbjct: 8  VKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIR 67

Query: 78 LLTTDSVGVSYSKESRN 89
              +S   + +++ ++
Sbjct: 68 FCQGESSSSTAARKGKH 84

[Close]
BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match: gi|659075087|ref|XP_008437958.1| (PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 2.0e-44
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 1 

Query: 80  VSYSKESRNHCSPTSVLRLEEQNWRPIEH-LSEESGLEEEFNWLYDRNSNSFLFNLRSPQ 139
           VS +KESR+ CSPTSVLRLEE+NWR I+H LSEESGLE+EFNWLYDRNSNSFLFNL SPQ
Sbjct: 181 VSETKESRSVCSPTSVLRLEEENWRAIDHYLSEESGLEDEFNWLYDRNSNSFLFNLISPQ 240

Query: 140 PLFSDQMELEIPKWEDFGDISVDFDSCKWDVENYFQDPSFSIA 182
           P+FSDQME+ IPKWEDFGDISVDFDSCKWDVENYFQDP+FSIA
Sbjct: 241 PIFSDQMEMTIPKWEDFGDISVDFDSCKWDVENYFQDPNFSIA 283

[Close]
BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match: gi|307136351|gb|ADN34165.1| (AP2/ERF domain-containing transcription factor [Cucumis melo subsp. melo])

HSP 1 Score: 187.6 bits (475), Expect = 2.0e-44
Identity = 89/103 (86.41%), Postives = 97/103 (94.17%), Query Frame = 1 

Query: 80  VSYSKESRNHCSPTSVLRLEEQNWRPIEH-LSEESGLEEEFNWLYDRNSNSFLFNLRSPQ 139
           VS +KESR+ CSPTSVLRLEE+NWR I+H LSEESGLE+EFNWLYDRNSNSFLFNL SPQ
Sbjct: 174 VSETKESRSVCSPTSVLRLEEENWRAIDHYLSEESGLEDEFNWLYDRNSNSFLFNLISPQ 233

Query: 140 PLFSDQMELEIPKWEDFGDISVDFDSCKWDVENYFQDPSFSIA 182
           P+FSDQME+ IPKWEDFGDISVDFDSCKWDVENYFQDP+FSIA
Sbjct: 234 PIFSDQMEMTIPKWEDFGDISVDFDSCKWDVENYFQDPNFSIA 276

[Close]
BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match: gi|778677038|ref|XP_004133833.2| (PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-43
Identity = 86/106 (81.13%), Postives = 98/106 (92.45%), Query Frame = 1 

Query: 77  SVGVSYSKESRNHCSPTSVLRLEEQNWRPIEH-LSEESGLEEEFNWLYDRNSNSFLFNLR 136
           +  VS +KESR+ CSPTSVLRLE++NWR I+H LSEESGLE+EFNWLYDRNSNSFLFNL 
Sbjct: 178 AAAVSETKESRSICSPTSVLRLEDENWRAIDHYLSEESGLEDEFNWLYDRNSNSFLFNLI 237

Query: 137 SPQPLFSDQMELEIPKWEDFGDISVDFDSCKWDVENYFQDPSFSIA 182
           +PQP+FSDQ+E+ IPKWEDFGDISVDFDSCKWDVENYFQDP+FSIA
Sbjct: 238 NPQPIFSDQLEITIPKWEDFGDISVDFDSCKWDVENYFQDPNFSIA 283

[Close]
BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match: gi|703091751|ref|XP_010094437.1| (Pathogenesis-related protein transcriptional activator PTI6 [Morus notabilis])

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-06
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 

Query: 12 RVCSAGIKFREVRTITDKP--ATETKLVRITYTDGDATDSSSGEDEEPSLIRHVKRHVTE 71
          R+    IK+ E +T T KP    + KL+RI  TD DATDSSS ++ EPS++R VKRH+ E
Sbjct: 6  RILDREIKYSEHKTTTRKPMAGAQQKLIRIIITDADATDSSSDDESEPSVLRVVKRHIKE 65

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g16430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g16430 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCG6_CUCME1.4e-4486.41AP2/ERF domain-containing transcription factor OS=Cucumis melo subsp. melo PE=4 ... [more]
A0A0A0L397_CUCSA1.2e-4381.13Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120390 PE=4 SV=1[more]
W9R6S9_9ROSA3.3e-0650.82Pathogenesis-related protein transcriptional activator PTI6 OS=Morus notabilis G... [more]
BLAST of Cp4.1LG03g16430 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61630.18.6e-0638.96 cytokinin response factor 6[more]
BLAST of Cp4.1LG03g16430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075087|ref|XP_008437958.1|2.0e-4486.41PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Cucum... [more]
gi|307136351|gb|ADN34165.1|2.0e-4486.41AP2/ERF domain-containing transcription factor [Cucumis melo subsp. melo][more]
gi|778677038|ref|XP_004133833.2|1.7e-4381.13PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Cucum... [more]
gi|703091751|ref|XP_010094437.1|4.8e-0650.82Pathogenesis-related protein transcriptional activator PTI6 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g16430.1Cp4.1LG03g16430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g16430CmaCh00G003340Cucurbita maxima (Rimu)cmacpeB005
Cp4.1LG03g16430CmaCh14G020850Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g16430CmoCh14G021440Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g16430CmoCh06G010700Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g16430Cla021189Watermelon (97103) v1cpewmB613
Cp4.1LG03g16430Csa3G120390Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g16430MELO3C006059Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g16430ClCG05G001070Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g16430CSPI03G08270Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g16430Lsi05G020910Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g16430MELO3C006059.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g16430CsaV3_3G008400Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g16430Bhi01G000310Wax gourdcpewgoB0770
Cp4.1LG03g16430CsGy3G008400Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g16430Carg20870Silver-seed gourdcarcpeB1379
Cp4.1LG03g16430Carg20962Silver-seed gourdcarcpeB0691
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g16430Cucurbita pepo (Zucchini)cpecpeB052
Cp4.1LG03g16430Cucurbita pepo (Zucchini)cpecpeB217
Cp4.1LG03g16430Cucurbita pepo (Zucchini)cpecpeB242
Cp4.1LG03g16430Cucurbita pepo (Zucchini)cpecpeB479
Cp4.1LG03g16430Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g16430Cucumber (Gy14) v1cgycpeB0367
Cp4.1LG03g16430Cucumber (Gy14) v1cgycpeB0574
Cp4.1LG03g16430Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g16430Cucurbita maxima (Rimu)cmacpeB639
Cp4.1LG03g16430Cucurbita maxima (Rimu)cmacpeB831
Cp4.1LG03g16430Cucurbita moschata (Rifu)cmocpeB589
Cp4.1LG03g16430Wild cucumber (PI 183967)cpecpiB624
Cp4.1LG03g16430Wild cucumber (PI 183967)cpecpiB632
Cp4.1LG03g16430Cucumber (Chinese Long) v2cpecuB622
Cp4.1LG03g16430Bottle gourd (USVL1VR-Ls)cpelsiB483
Cp4.1LG03g16430Bottle gourd (USVL1VR-Ls)cpelsiB486
Cp4.1LG03g16430Watermelon (Charleston Gray)cpewcgB556
Cp4.1LG03g16430Watermelon (97103) v1cpewmB616
Cp4.1LG03g16430Watermelon (97103) v1cpewmB612
Cp4.1LG03g16430Melon (DHL92) v3.5.1cpemeB554
Cp4.1LG03g16430Cucumber (Gy14) v2cgybcpeB678
Cp4.1LG03g16430Melon (DHL92) v3.6.1cpemedB651
Cp4.1LG03g16430Melon (DHL92) v3.6.1cpemedB658
Cp4.1LG03g16430Cucumber (Chinese Long) v3cpecucB0774
Cp4.1LG03g16430Wax gourdcpewgoB0761