Cp4.1LG03g15470 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g15470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG03 : 7495625 .. 7497072 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGGTAATACGAAACCCAAGCTTCAAGTTTTGTCCAAATGTATACTTTATTGAATTGAAGACTATATGGAATCAAAGGAGACATCTTTTTTACCCTTTATAAAAATAAAAAAATAAAAAAAGAAAATAAAAAACCCTTCTCATGATTTGTTTTTATAAATAAAAAGTTGGGTTTTGTTTAGATTTTCTAAGCTTATGCAGATACCAAGAACAAAAAAAGTATTTTTTTAGGGTTTTTGTGATTGGAAACCCTAGAAAAGCTTTGACTCTTTTGCCTTTCACCAACACAACACTGTTTATATAAAACAAACAACCCTTCATGGATCTCACTCTTTTCCCCTCCTTCCATCAAACACCCCAAAATCACAAACAATCCATAACTGACCCAAAGATGAAGAACATCACCACCATCTTCTTCACCTTACCCATCTTCCTTCTCTCTCTCTCTCATGCTCTCCAAGGTATTACACAACTTACTTTCTTTATTCTTTCCTTAAAAATCCACTTTTTTTCTCAAATCTCCCGCTTTGTAGATCACATTGATGCACCATTGCTGGCTATTGGAGCTCAATTTTCTGAATCCTCTCTTCAAAAGGTGATTAATTAACCTCTCTTTCACTAATTTTACAATTTCGAAAACCAATACTCTAATCATTTTGTTTTTCATTTTTAGGAGGAAACCCTTGTGGGATTTGATGCCATGAACATGAGGAAAATGGGGAGTGGAAGAATGAGAGTGGCAATAAACAGGATAATGAGGAGAGAGAGTACTACAAATGATGAGAGAGAAGAAGAAGATCAAGAAAGCTCAAGAATTTCAGGTGTCAAAAATTGTAACTTGGAAGATGAAAAGGGTGATTTTGGAGTTGGTAGTGTAAAAAATTGTAAGAATGGTGGTAGGAAGCTCAATGTTGCTGGCTTTGTAACATTTGGTGCAGATTATAAAGGGCCTCTACACCACCCTCCTAAGCATAATTAATCACACCCCCTTTTATAGGATCTTTTTTGGTTTTGTGTTAGCTACTTAAATGGGTCCAAATATATATACATATAATATTTTGTAATATCATCAAACCACAAAAAGAGTACTCAAAATCAATGCTTGTAAGTATTTAGCAATTCATATGGTTTCATGCAGGACAAAACACAAAGAGCTCAAACAAGTTTCATCAAACCTCTCAACTTAACCATCAGGTCTCTCTCTCTCTTTCCCTCTCTCAATTTTGTTTTCCCACTTCAATTCTAAGCTCACATTTGTTGTGCAGGACACTAGTGAGGCAAAAAGATGGAAGAATTCAAGCAGCTCCAAGAGGGTATCGAGGAGGGAGGAAGAAACTCAAAGGCTTGTGAAGGCAGCCAGAGAGATAGCCAATTTGATGCACAAAGATTATAAGGATTGGGGTCACCGCAAGCCACCCATCAACAATCGTGAACCTTTGCATTAA

mRNA sequence

ATGCATGATACCAAGAACAAAAAAAATCACATTGATGCACCATTGCTGGCTATTGGAGCTCAATTTTCTGAATCCTCTCTTCAAAAGGAGGAAACCCTTGTGGGATTTGATGCCATGAACATGAGGAAAATGGGGAGTGGAAGAATGAGAGTGGCAATAAACAGGATAATGAGGAGAGAGAGTACTACAAATGATGAGAGAGAAGAAGAAGATCAAGAAAGCTCAAGAATTTCAGGACAAAACACAAAGAGCTCAAACAAGTTTCATCAAACCTCTCAACTTAACCATCAGGACACTAGTGAGGCAAAAAGATGGAAGAATTCAAGCAGCTCCAAGAGGGTATCGAGGAGGGAGGAAGAAACTCAAAGGCTTGTGAAGGCAGCCAGAGAGATAGCCAATTTGATGCACAAAGATTATAAGGATTGGGGTCACCGCAAGCCACCCATCAACAATCGTGAACCTTTGCATTAA

Coding sequence (CDS)

ATGCATGATACCAAGAACAAAAAAAATCACATTGATGCACCATTGCTGGCTATTGGAGCTCAATTTTCTGAATCCTCTCTTCAAAAGGAGGAAACCCTTGTGGGATTTGATGCCATGAACATGAGGAAAATGGGGAGTGGAAGAATGAGAGTGGCAATAAACAGGATAATGAGGAGAGAGAGTACTACAAATGATGAGAGAGAAGAAGAAGATCAAGAAAGCTCAAGAATTTCAGGACAAAACACAAAGAGCTCAAACAAGTTTCATCAAACCTCTCAACTTAACCATCAGGACACTAGTGAGGCAAAAAGATGGAAGAATTCAAGCAGCTCCAAGAGGGTATCGAGGAGGGAGGAAGAAACTCAAAGGCTTGTGAAGGCAGCCAGAGAGATAGCCAATTTGATGCACAAAGATTATAAGGATTGGGGTCACCGCAAGCCACCCATCAACAATCGTGAACCTTTGCATTAA

Protein sequence

MHDTKNKKNHIDAPLLAIGAQFSESSLQKEETLVGFDAMNMRKMGSGRMRVAINRIMRRESTTNDEREEEDQESSRISGQNTKSSNKFHQTSQLNHQDTSEAKRWKNSSSSKRVSRREEETQRLVKAAREIANLMHKDYKDWGHRKPPINNREPLH

Homology

[Close]

BLAST of Cp4.1LG03g15470 vs. TrEMBL
Match: A0A0A0L0U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G124880 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.3e-39
Identity = 97/159 (61.01%), Postives = 123/159 (77.36%), Query Frame = 1


Query: 8   KNHIDAPLLAIGAQFSESSLQKEETLVGFDAMNMRKMGSGRMRVAINRIMRRESTTNDER 67
           +++ D P L IGA+ SESSL +E+ LVGFDA+ +RKMGSGR RV + RI+++E TT ++ 
Sbjct: 32  QDYTDEPFLPIGAELSESSLDEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKKEITTTNDG 91

Query: 68  EEEDQESSRISGQNTKSSNKFHQTSQLNH-QDTSEAKRWKN--------SSSSKRV-SRR 127
            +ED+E+SRISG   KSSNK HQTSQ+NH Q+T +A R KN        S++ KRV   R
Sbjct: 92  RQEDEENSRISGLYQKSSNKAHQTSQVNHDQETIDAARSKNSQHVYKVKSTNLKRVILAR 151

Query: 128 EEETQRLVKAAREIANLMHKDYKDWGHRKPPINNREPLH 157
           ++ETQRL+KAAREIANLMHKDYK+W HRKPPINNREPLH
Sbjct: 152 DDETQRLLKAAREIANLMHKDYKEWAHRKPPINNREPLH 190

[Close]

BLAST of Cp4.1LG03g15470 vs. NCBI nr
Match: gi|700198608|gb|KGN53766.1| (hypothetical protein Csa_4G124880 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 6.2e-39
Identity = 97/159 (61.01%), Postives = 123/159 (77.36%), Query Frame = 1


Query: 8   KNHIDAPLLAIGAQFSESSLQKEETLVGFDAMNMRKMGSGRMRVAINRIMRRESTTNDER 67
           +++ D P L IGA+ SESSL +E+ LVGFDA+ +RKMGSGR RV + RI+++E TT ++ 
Sbjct: 32  QDYTDEPFLPIGAELSESSLDEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKKEITTTNDG 91

Query: 68  EEEDQESSRISGQNTKSSNKFHQTSQLNH-QDTSEAKRWKN--------SSSSKRV-SRR 127
            +ED+E+SRISG   KSSNK HQTSQ+NH Q+T +A R KN        S++ KRV   R
Sbjct: 92  RQEDEENSRISGLYQKSSNKAHQTSQVNHDQETIDAARSKNSQHVYKVKSTNLKRVILAR 151

Query: 128 EEETQRLVKAAREIANLMHKDYKDWGHRKPPINNREPLH 157
           ++ETQRL+KAAREIANLMHKDYK+W HRKPPINNREPLH
Sbjct: 152 DDETQRLLKAAREIANLMHKDYKEWAHRKPPINNREPLH 190

[Close]

BLAST of Cp4.1LG03g15470 vs. NCBI nr
Match: gi|659111070|ref|XP_008455564.1| (PREDICTED: uncharacterized protein LOC103495712 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 94/159 (59.12%), Postives = 119/159 (74.84%), Query Frame = 1


Query: 8   KNHIDAPLLAIGAQFSESSLQKEETLVGFDAMNMRKMGSGRMRVAINRIMRRESTTNDER 67
           +++ D P L IG + SESS ++E+ LVGFDA+ +RKMGSGR RV + RI+++  TT    
Sbjct: 32  QDYTDEPFLPIGGELSESSHEEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKKGITTPIYE 91

Query: 68  EEEDQESSRISGQNTKSSNKFHQTSQLNH-QDTSEAKRWKNS--------SSSKRV-SRR 127
            +ED+ESSRISG   KSSNK  QTSQ+NH Q+T +AKR K S        ++SKRV   R
Sbjct: 92  RQEDEESSRISGLYKKSSNKARQTSQVNHDQETIDAKRSKISQHVYKVKWTNSKRVILAR 151

Query: 128 EEETQRLVKAAREIANLMHKDYKDWGHRKPPINNREPLH 157
           ++E+QRL+KAAREIANLMHKDYK+W HRKPPINNREPLH
Sbjct: 152 DDESQRLLKAAREIANLMHKDYKEWAHRKPPINNREPLH 190

[Close]

BLAST of Cp4.1LG03g15470 vs. NCBI nr
Match: gi|778692092|ref|XP_011653405.1| (PREDICTED: uncharacterized protein LOC105435212 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 9.9e-13
Identity = 44/81 (54.32%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 8   KNHIDAPLLAIGAQFSESSLQKEETLVGFDAMNMRKMGSGRMRVAINRIMRRESTTNDER 67
           +++ D P L IGA+ SESSL +E+ LVGFDA+ +RKMGSGR RV + RI+++E TT ++ 
Sbjct: 32  QDYTDEPFLPIGAELSESSLDEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKKEITTTNDG 91

Query: 68  EEEDQESSRISG--QNTKSSN 87
            +ED+E+SRISG  QN ++SN
Sbjct: 92  RQEDEENSRISGANQNDRTSN 112

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g15470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g15470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0U7_CUCSA	4.3e-39	61.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G124880 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g15470 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g15470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198608\|gb\|KGN53766.1\|	6.2e-39	61.01	hypothetical protein Csa_4G124880 [Cucumis sativus]	[more]
gi\|659111070\|ref\|XP_008455564.1\|	1.9e-35	59.12	PREDICTED: uncharacterized protein LOC103495712 [Cucumis melo]	[more]
gi\|778692092\|ref\|XP_011653405.1\|	9.9e-13	54.32	PREDICTED: uncharacterized protein LOC105435212 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g15470.1	Cp4.1LG03g15470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 117..137 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g15470	Cucsa.174630	Cucumber (Gy14) v1	cgycpeB0481
Cp4.1LG03g15470	CmaCh14G011420	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g15470	CmaCh01G004300	Cucurbita maxima (Rimu)	cmacpeB495
Cp4.1LG03g15470	CmoCh01G004630	Cucurbita moschata (Rifu)	cmocpeB454
Cp4.1LG03g15470	CmoCh14G011730	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g15470	Cla010803	Watermelon (97103) v1	cpewmB601
Cp4.1LG03g15470	Csa4G124880	Cucumber (Chinese Long) v2	cpecuB617
Cp4.1LG03g15470	MELO3C018903	Melon (DHL92) v3.5.1	cpemeB590
Cp4.1LG03g15470	ClCG07G016120	Watermelon (Charleston Gray)	cpewcgB572
Cp4.1LG03g15470	CSPI04G09830	Wild cucumber (PI 183967)	cpecpiB619
Cp4.1LG03g15470	Lsi07G009670	Bottle gourd (USVL1VR-Ls)	cpelsiB517
Cp4.1LG03g15470	CsaV3_4G009950	Cucumber (Chinese Long) v3	cpecucB0769
Cp4.1LG03g15470	Bhi01G001715	Wax gourd	cpewgoB0776
Cp4.1LG03g15470	CsGy4G009450	Cucumber (Gy14) v2	cgybcpeB554
Cp4.1LG03g15470	Carg26748	Silver-seed gourd	carcpeB1150
Cp4.1LG03g15470	Carg20383	Silver-seed gourd	carcpeB0983

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g15470	Wild cucumber (PI 183967)	cpecpiB597
Cp4.1LG03g15470	Melon (DHL92) v3.6.1	cpemedB700
Cp4.1LG03g15470	Cucumber (Chinese Long) v3	cpecucB0742
Cp4.1LG03g15470	Wax gourd	cpewgoB0780
Cp4.1LG03g15470	Cucurbita pepo (Zucchini)	cpecpeB450
Cp4.1LG03g15470	Cucumber (Gy14) v1	cgycpeB0262