CmoCh14G011730 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G011730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr14 : 9620051 .. 9622230 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGGTAATACGAAACCCAAGCTTCAAGTTTTGTCCAAAGGTATACTTTATTGAATTGAAGACTATATGGAATCAAAGAAGACATCTTCTTTACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTCTCATGATTTGTTTTTATAAATAAAAACTTGGTTTTGTTTTATTTTGCATCTTTTGTTTAGATTTTCTAAGCTTATGCAGATACCAAGAACAAAAAAAGTATTTTTTTAGGGTTTTTGTGATTGGAAACCCTAGAAAAGCTTTGACTCTTTTGCCTTTCACCAACACAACACTGTTTATATAAAACAAACAACCCTTCATGGATCTCACTCTTTTCCCCTCCTTCCATCAAACACCCAAAAATCACAAACAATCCTTAACTGACCCAAAGATGAAGAACATCACCACCATCTTCTTCATCTTACCCATCTTCCTTCTCTCTCTCTCTCATGCTCTCCAAGGTATTACACAACTTACTTTCTTTATTCTTTCCTTAAAAATCCACTTTTTTTTCTCAAATCTCCCGCTTTGTAGATCACATTGGTGCACCATTGCTGTCTATTGGAGCTCAATTTTCTGAATCCTCTCTTCAAAAGGTGATTAATTAACCTCTCTTTCACTAATTTTACAATTTCGAAAACCTATACTCTAATCATTTTATTTTTTATTTTTAGGAGGAAACGCTTGTGGGATTTGATGCCATGAACATGAGGAAAATGGGGAATGGAAGAATGAGAGTGGCAATAAAGAGGATAATGAGGAGAGAGAGTACTACAAATGATGAGAGAGAAGAAGAAGAAGATCAAGAAAGCTCAAGAATTTCAGGTGTCAAAAATTGTAACTTGGAAGATGAAAAGGGTGATTTTGGAGTTGGTAGTGTAAAAAATTGTAAGAATGGTGGTAGGAAGCTCAATGTTGCTGGCTTTGTAACATTTGGTGCAGATTATAAAGGGCCTCTACACCACCCTCCTAAACATAATTAATCACACCCCTTTTTATAGGATCTTTTTTTGGTTTTGTGTTAGCTACTTAAATGGGTCCAAATATACATATAATATTTTGTAATATCATCAAACAACAAAAAGAGTACTCAAAATCAATGCTTGTAAGTATTTAGCAATTCATATGGTTTCATGCAGGACAAAACACAAAGCGTTCAAACAAGCTTCATCAAACCTCTCAACTTAACCATCAGGTCTCTCTCTCTTTCCCTCTCTCAATTTTGTTTTCCCCACTTCAATTCTAAGCTCACATTTGTTGTGCAGGACACTAGTGAGGCAAAAAGATGGAAGAATTCAAGCATCTCCAAGAGGGTATCGACGAGGGAGGAAGAAACTCAAAGGCTTGTGAAGGCAGCCAGAGAGATAGCCAATTTGATGCACAAAGATTATAAGGATTGGGGTCACCGCAAGCCACCAATCAACAATCGTGAACCATTGCATTAA

mRNA sequence

ATGCATGGTAATACGAAACCCAAGCTTCAAGTTTTGTCCAAAGATCACATTGGTGCACCATTGCTGTCTATTGGAGCTCAATTTTCTGAATCCTCTCTTCAAAAGGAGGAAACGCTTGTGGGATTTGATGCCATGAACATGAGGAAAATGGGGAATGGAAGAATGAGAGTGGCAATAAAGAGGATAATGAGGAGAGAGAGTACTACAAATGATGAGAGAGAAGAAGAAGAAGATCAAGAAAGCTCAAGAATTTCAGGTGTCAAAAATTGTAACTTGGAAGATGAAAAGGGTGATTTTGGAGTTGGTAGTGTAAAAAATTGACAAAACACAAAGCGTTCAAACAAGCTTCATCAAACCTCTCAACTTAACCATCAGGACACTAGTGAGGCAAAAAGATGGAAGAATTCAAGCATCTCCAAGAGGGTATCGACGAGGGAGGAAGAAACTCAAAGGCTTGTGAAGGCAGCCAGAGAGATAGCCAATTTGATGCACAAAGATTATAAGGATTGGGGTCACCGCAAGCCACCAATCAACAATCGTGAACCATTGCATTAA

Coding sequence (CDS)

ATGCATGGTAATACGAAACCCAAGCTTCAAGTTTTGTCCAAAGATCACATTGGTGCACCATTGCTGTCTATTGGAGCTCAATTTTCTGAATCCTCTCTTCAAAAGGAGGAAACGCTTGTGGGATTTGATGCCATGAACATGAGGAAAATGGGGAATGGAAGAATGAGAGTGGCAATAAAGAGGATAATGAGGAGAGAGAGTACTACAAATGATGAGAGAGAAGAAGAAGAAGATCAAGAAAGCTCAAGAATTTCAGGTGTCAAAAATTGTAACTTGGAAGATGAAAAGGGTGATTTTGGAGTTGGTAGTGTAAAAAATTGA

Homology

[Close]

BLAST of CmoCh14G011730 vs. TrEMBL
Match: A0A0A0L0U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G124880 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-12
Identity = 43/75 (57.33%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 14  KDHIGAPLLSIGAQFSESSLQKEETLVGFDAMNMRKMGNGRMRVAIKRIMRRE-STTNDE 73
           +D+   P L IGA+ SESSL +E+ LVGFDA+ +RKMG+GR RV +KRI+++E +TTND 
Sbjct: 32  QDYTDEPFLPIGAELSESSLDEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKKEITTTNDG 91

Query: 74  REEEEDQESSRISGV 88
           R  +ED+E+SRISG+
Sbjct: 92  R--QEDEENSRISGL 104

[Close]

BLAST of CmoCh14G011730 vs. NCBI nr
Match: gi|778692092|ref|XP_011653405.1| (PREDICTED: uncharacterized protein LOC105435212 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-16
Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 14  KDHIGAPLLSIGAQFSESSLQKEETLVGFDAMNMRKMGNGRMRVAIKRIMRRE-STTNDE 73
           +D+   P L IGA+ SESSL +E+ LVGFDA+ +RKMG+GR RV +KRI+++E +TTND 
Sbjct: 32  QDYTDEPFLPIGAELSESSLDEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKKEITTTNDG 91

Query: 74  REEEEDQESSRISGV----KNCNLEDEKGDFGV 102
           R  +ED+E+SRISG     +  N ED+KGDFGV
Sbjct: 92  R--QEDEENSRISGANQNDRTSNFEDQKGDFGV 122

[Close]

BLAST of CmoCh14G011730 vs. NCBI nr
Match: gi|700198608|gb|KGN53766.1| (hypothetical protein Csa_4G124880 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-12
Identity = 43/75 (57.33%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 14  KDHIGAPLLSIGAQFSESSLQKEETLVGFDAMNMRKMGNGRMRVAIKRIMRRE-STTNDE 73
           +D+   P L IGA+ SESSL +E+ LVGFDA+ +RKMG+GR RV +KRI+++E +TTND 
Sbjct: 32  QDYTDEPFLPIGAELSESSLDEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKKEITTTNDG 91

Query: 74  REEEEDQESSRISGV 88
           R  +ED+E+SRISG+
Sbjct: 92  R--QEDEENSRISGL 104

[Close]

BLAST of CmoCh14G011730 vs. NCBI nr
Match: gi|659111070|ref|XP_008455564.1| (PREDICTED: uncharacterized protein LOC103495712 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 14  KDHIGAPLLSIGAQFSESSLQKEETLVGFDAMNMRKMGNGRMRVAIKRIMRRESTTNDER 73
           +D+   P L IG + SESS ++E+ LVGFDA+ +RKMG+GR RV +KRI+++  TT    
Sbjct: 32  QDYTDEPFLPIGGELSESSHEEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKKGITT-PIY 91

Query: 74  EEEEDQESSRISGV 88
           E +ED+ESSRISG+
Sbjct: 92  ERQEDEESSRISGL 104

The following BLAST results are available for this feature:

BLAST of CmoCh14G011730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G011730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0U7_CUCSA	4.0e-12	57.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G124880 PE=4 SV=1	[more]

BLAST of CmoCh14G011730 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G011730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778692092\|ref\|XP_011653405.1\|	8.5e-16	55.91	PREDICTED: uncharacterized protein LOC105435212 [Cucumis sativus]	[more]
gi\|700198608\|gb\|KGN53766.1\|	5.7e-12	57.33	hypothetical protein Csa_4G124880 [Cucumis sativus]	[more]
gi\|659111070\|ref\|XP_008455564.1\|	1.2e-09	52.70	PREDICTED: uncharacterized protein LOC103495712 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G011730.1	CmoCh14G011730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 59..79 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G011730	CmaCh14G011420	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G011730	Cla010803	Watermelon (97103) v1	cmowmB219
CmoCh14G011730	ClCG07G016120	Watermelon (Charleston Gray)	cmowcgB231
CmoCh14G011730	Cp4.1LG03g15470	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G011730	CsaV3_4G009950	Cucumber (Chinese Long) v3	cmocucB0293
CmoCh14G011730	Carg20383	Silver-seed gourd	carcmoB0953
CmoCh14G011730	Carg26748	Silver-seed gourd	carcmoB1108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G011730	Wild cucumber (PI 183967)	cmocpiB252
CmoCh14G011730	Cucumber (Chinese Long) v2	cmocuB247
CmoCh14G011730	Melon (DHL92) v3.5.1	cmomeB234
CmoCh14G011730	Cucurbita pepo (Zucchini)	cmocpeB242
CmoCh14G011730	Cucurbita pepo (Zucchini)	cmocpeB246
CmoCh14G011730	Bottle gourd (USVL1VR-Ls)	cmolsiB245
CmoCh14G011730	Cucumber (Gy14) v2	cgybcmoB457
CmoCh14G011730	Melon (DHL92) v3.6.1	cmomedB266
CmoCh14G011730	Watermelon (97103) v2	cmowmbB256
CmoCh14G011730	Wax gourd	cmowgoB0309
CmoCh14G011730	Wax gourd	cmowgoB0312
CmoCh14G011730	Cucurbita moschata (Rifu)	cmocmoB204
CmoCh14G011730	Cucumber (Gy14) v1	cgycmoB0496
CmoCh14G011730	Cucurbita maxima (Rimu)	cmacmoB246
CmoCh14G011730	Cucurbita maxima (Rimu)	cmacmoB463