Cp4.1LG03g15050 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g15050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	YGGT family protein
Location	Cp4.1LG03 : 8222644 .. 8223922 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATTATTTTTATTTCCACATTATCTTCCCCCTTCACATTTCTGCGTCCGCGGCCTCAATTTTGCCGATAAACAAACCACACCCAACTATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTTCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTATTCCCACTCCTTCAACCGCCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGAAATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGTCAATTCTGAAAAAGTAGCAGGGGCATGTATTGAAGGAGGCTACGAGTGGATTTGGTTGGTTGGTTGGTTAGTGGCGGAATTTACGACGAGTAAGGTATAATTCAATTCATCAAAATTTGGATTTGAGTTTTGGGGTTTTGGATATATCGTAATTTGCTTTTATTTCTGTTTTTCTTCTTCAGGGGATTTGAGTTTGCGAGACATGATTGTAAATTTTAGTTAAAACAGTTGAATTTTGACAGCTTTTAATGAAGCATTTGTTCGATGAGGTTATCGTTTCGGTTTATGTAATCTCCGTTTCAGACTTAGAAAAGGATGGTATATTTGAATTTGTTTGCTCGGCATAAATTATCATCTGCTGTGGTACTTTTCAGCAGTTTTACTACCCAGCCTTTTGCATACAGCTTGCTGAATGATTTAACACTGCTCCGATTACTATCTTTGCTATGTTTATGTTATAAGAATAATATATGGGCTAAGAATATAAAGGTGGTAATCA

mRNA sequence

GTTATTATTTTTATTTCCACATTATCTTCCCCCTTCACATTTCTGCGTCCGCGGCCTCAATTTTGCCGATAAACAAACCACACCCAACTATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTTCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTATTCCCACTCCTTCAACCGCCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGAAATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGGGATTTGAGTTTGCGAGACATGATTGTAAATTTTAGTTAAAACAGTTGAATTTTGACAGCTTTTAATGAAGCATTTGTTCGATGAGGTTATCGTTTCGGTTTATGTAATCTCCGTTTCAGACTTAGAAAAGGATGGTATATTTGAATTTGTTTGCTCGGCATAAATTATCATCTGCTGTGGTACTTTTCAGCAGTTTTACTACCCAGCCTTTTGCATACAGCTTGCTGAATGATTTAACACTGCTCCGATTACTATCTTTGCTATGTTTATGTTATAAGAATAATATATGGGCTAAGAATATAAAGGTGGTAATCA

Coding sequence (CDS)

ATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTTCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTATTCCCACTCCTTCAACCGCCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCCTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGAAATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGTGATCCGTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGGGATTTGAGTTTGCGAGACATGATTGTAAATTTTAG

Protein sequence

MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGGFEFARHDCKF

Homology

[Close]

BLAST of Cp4.1LG03g15050 vs. Swiss-Prot
Match: YMG12_ARATH (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-2 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.6e-49
Identity = 120/234 (51.28%), Postives = 152/234 (64.96%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           + +S++A+  LP      PP + P +++           P  L F   N   H  R + S
Sbjct: 11  LRASILANPRLP------PPIIRPRLSL-----------PRKLSF---NLSLHNARTIVS 70

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSIS-LTFSTLIVKL---VQNVWPSLI 120
           S+ ++ SP LS++    P     +  TR + T++ ++ +   +LI KL   + N+ P + 
Sbjct: 71  SAVTSSSPVLSSKP---PSQFPFSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQ 130

Query: 121 AQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVL 180
           A           +F+ A  LFFA+L DRP G LNTPLTVVAAGL+KWLDIYSGVL+VRVL
Sbjct: 131 A-----------SFRTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVL 190

Query: 181 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLG
Sbjct: 191 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLG 210

[Close]

BLAST of Cp4.1LG03g15050 vs. Swiss-Prot
Match: YMG11_ARATH (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-1 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.0e-48
Identity = 121/234 (51.71%), Postives = 151/234 (64.53%), Query Frame = 1


Query: 5   LIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPL-----PLRFCTANSPNHGLRVLA 64
           + A  AL LR PV  P    S   +  + N+P P+ L     P    +  +P   +R+ A
Sbjct: 1   MAAITALTLRSPVYLPSSATSPRFHGFT-NQPPPARLFFPLNPFPSLSIQNPK-SIRISA 60

Query: 65  SSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQC 124
           S+SP   +P L  +       S LTG TR LAT+ ++++  + ++ + +       +A  
Sbjct: 61  SASPIT-TPILQTEKSTAR-SSTLTGSTRSLATLAALAIAVTRVLAQKLS------LAIQ 120

Query: 125 LVNPCTGLG---AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVL 184
             +P    G   +   AG +FFA+L DRP G LNTPLTVVA G+ KWLDIYSGVL+VRVL
Sbjct: 121 TSSPVIADGLRFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVL 180

Query: 185 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           LSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 LSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 224

[Close]

BLAST of Cp4.1LG03g15050 vs. Swiss-Prot
Match: YLMG2_ARATH (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.4e-12
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 214
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 192

Query: 215 LDVSPLLAFAVL 227
           LD+SP+LAF VL
Sbjct: 193 LDLSPILAFLVL 201

[Close]

BLAST of Cp4.1LG03g15050 vs. Swiss-Prot
Match: YCF19_GUITH (Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 149 LNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNII 208
           ++   T++ +    +L IY  +LL+RV L+WFPN+ W  QP  ++  + DPYL +FR I+
Sbjct: 1   MSNSFTLLFSSFIGFLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIV 60

Query: 209 PPIFDTLDVSPLLAFAVL 227
           PP+   +D+SP+L F +L
Sbjct: 61  PPLIG-IDISPILGFILL 77

[Close]

BLAST of Cp4.1LG03g15050 vs. Swiss-Prot
Match: YCF19_PORPU (Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-09
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 153 LTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIF 212
           L ++   +A + +IY  ++L+++ L+WFP + W  +P  ++  + DPYL LFR  IPP+F
Sbjct: 8   LNLLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMF 67

Query: 213 DTLDVSPLLAFAVLGTL 230
             +D+SP+L    L  L
Sbjct: 68  G-MDMSPMLGIIFLQCL 83

[Close]

BLAST of Cp4.1LG03g15050 vs. TrEMBL
Match: A0A0A0LEB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642720 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 4.1e-89
Identity = 179/231 (77.49%), Postives = 195/231 (84.42%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP   PL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPTYPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPS+YSPKLS+QS+EIPI SLLTGPTR+LATILS+SL FST+IV+LVQNVWP LI QCL
Sbjct: 61  SSPSSYSPKLSHQSQEIPISSLLTGPTRILATILSVSLAFSTVIVQLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GLGA QPAGSLFFAA+ +R    LNTPLTVVA GLAKWLDIYSGVL+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFAAVRNRTA--LNTPLTVVAVGLAKWLDIYSGVLMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           FPN+PW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLG LG
Sbjct: 181 FPNVPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGALG 218

[Close]

BLAST of Cp4.1LG03g15050 vs. TrEMBL
Match: A0A061DLU9_THECC (YGGT family protein OS=Theobroma cacao GN=TCM_002686 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.1e-55
Identity = 132/225 (58.67%), Postives = 151/225 (67.11%), Query Frame = 1


Query: 6   IASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSA 65
           + SQ L LR     P  +P   I++   N  L   LP++    N  +    +LAS SPS 
Sbjct: 3   LLSQTLLLRASNYLPPRNPISPIFTSKTNS-LALSLPIKPSNPNQKHPKFTLLASVSPSR 62

Query: 66  YSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCT 125
             P    +  +IP  S L   TR L T+ SI+L+ + +  K+VQN     I+Q   NP  
Sbjct: 63  TIPC---RPPQIPAQSRLKDSTRTLKTLFSIALSATIIFTKMVQNFALKTISQ---NP-- 122

Query: 126 GLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPW 185
              AF   G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSWFPNIPW
Sbjct: 123 --NAFSTVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPW 182

Query: 186 DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 183 DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 216

[Close]

BLAST of Cp4.1LG03g15050 vs. TrEMBL
Match: A0A0D2PA03_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G159100 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 132/229 (57.64%), Postives = 160/229 (69.87%), Query Frame = 1


Query: 4   SLIASQALPLRRPVL--PPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLASS 63
           SL++S  + L RP+L  PP+ +P+  I++    +P+  PL      +NS +   + +  +
Sbjct: 2   SLLSSHTI-LPRPLLHLPPR-NPNFPIFTF---KPIFLPLSPPIKPSNSVSKPPKFIPLA 61

Query: 64  SPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLV 123
           S SA  P    +S EIP  S L G TR L T+ S++L+ + +  K++QN     I+Q   
Sbjct: 62  SISA-PPATPCKSPEIPALSPLNGSTRTLKTLFSLALSATIVFTKMIQNYALKTISQ--- 121

Query: 124 NPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFP 183
           NP     A    G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSWFP
Sbjct: 122 NP----NALSTVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFP 181

Query: 184 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 182 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 217

[Close]

BLAST of Cp4.1LG03g15050 vs. TrEMBL
Match: A0A067L9Z0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15121 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-51
Identity = 132/231 (57.14%), Postives = 150/231 (64.94%), Query Frame = 1


Query: 11  LPLRRPVLPP-KLHPSIAIYSHSFNRPLPSPL-PLRFCTANSPNHGLRVLAS-SSPSAYS 70
           L  RRP+ P   L   +     SF+ P  +P  PL F T       LRVLAS SS S+  
Sbjct: 18  LSSRRPIQPAVTLFFPVQEPLKSFSIPFDNPKKPLCFYTKQHSR--LRVLASLSSQSSQI 77

Query: 71  PKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCTGL 130
             LS  +E  P   LLTG TR + TIL+++ + S + +  +Q    S+          GL
Sbjct: 78  TTLSPSTESQP---LLTGSTRTITTILTLAFSLSRVFLTSIQKFAVSVAGASFFPNLNGL 137

Query: 131 GAFQ--------PAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 190
              +          G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSW
Sbjct: 138 ATIRGLQGDLVNSVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSW 197

Query: 191 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 198 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 243

[Close]

BLAST of Cp4.1LG03g15050 vs. TrEMBL
Match: A0A068U6Y7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016468001 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 128/231 (55.41%), Postives = 146/231 (63.20%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ L  R+P +   + P+        N     PL L    AN P     + AS
Sbjct: 1   MASSLIASQTLIFRKPTV---ISPN--------NLTAAYPLRLSVSLAN-PKRPAMITAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIA-QC 120
           SS    +        + P  SLLTG TR + T+L+++LT   L+   V N+   L     
Sbjct: 61  SSTLLSNSSAKTSGYQNPALSLLTGSTRTVTTLLALALTAPKLLADKVLNLGLQLKGFHG 120

Query: 121 LVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           L  P         AG  FFAA+ D   G LNTP TVVAAG+AKWLDIYSGVL+VRVLLSW
Sbjct: 121 LPEPLV-----HSAGPAFFAAIRDASTGTLNTPFTVVAAGMAKWLDIYSGVLMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD+SPLLAFAVLGTLG
Sbjct: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDISPLLAFAVLGTLG 214

[Close]

BLAST of Cp4.1LG03g15050 vs. TAIR10
Match: AT4G27990.1 (AT4G27990.1 YGGT family protein)

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-50
Identity = 120/234 (51.28%), Postives = 152/234 (64.96%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           + +S++A+  LP      PP + P +++           P  L F   N   H  R + S
Sbjct: 11  LRASILANPRLP------PPIIRPRLSL-----------PRKLSF---NLSLHNARTIVS 70

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSIS-LTFSTLIVKL---VQNVWPSLI 120
           S+ ++ SP LS++    P     +  TR + T++ ++ +   +LI KL   + N+ P + 
Sbjct: 71  SAVTSSSPVLSSKP---PSQFPFSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQ 130

Query: 121 AQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVL 180
           A           +F+ A  LFFA+L DRP G LNTPLTVVAAGL+KWLDIYSGVL+VRVL
Sbjct: 131 A-----------SFRTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVL 190

Query: 181 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLG
Sbjct: 191 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLG 210

[Close]

BLAST of Cp4.1LG03g15050 vs. TAIR10
Match: AT3G07430.1 (AT3G07430.1 YGGT family protein)

HSP 1 Score: 194.9 bits (494), Expect = 5.7e-50
Identity = 121/234 (51.71%), Postives = 151/234 (64.53%), Query Frame = 1


Query: 5   LIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPL-----PLRFCTANSPNHGLRVLA 64
           + A  AL LR PV  P    S   +  + N+P P+ L     P    +  +P   +R+ A
Sbjct: 1   MAAITALTLRSPVYLPSSATSPRFHGFT-NQPPPARLFFPLNPFPSLSIQNPK-SIRISA 60

Query: 65  SSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQC 124
           S+SP   +P L  +       S LTG TR LAT+ ++++  + ++ + +       +A  
Sbjct: 61  SASPIT-TPILQTEKSTAR-SSTLTGSTRSLATLAALAIAVTRVLAQKLS------LAIQ 120

Query: 125 LVNPCTGLG---AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVL 184
             +P    G   +   AG +FFA+L DRP G LNTPLTVVA G+ KWLDIYSGVL+VRVL
Sbjct: 121 TSSPVIADGLRFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVL 180

Query: 185 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           LSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 181 LSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 224

[Close]

BLAST of Cp4.1LG03g15050 vs. TAIR10
Match: AT5G21920.1 (AT5G21920.1 YGGT family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-13
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 214
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 192

Query: 215 LDVSPLLAFAVL 227
           LD+SP+LAF VL
Sbjct: 193 LDLSPILAFLVL 201

[Close]

BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: gi|659120629|ref|XP_008460284.1| (PREDICTED: uncharacterized protein LOC103499156 [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 9.1e-90
Identity = 178/231 (77.06%), Postives = 194/231 (83.98%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP PSPL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPPSPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SS S+YSPKLS Q +EIPI  LLTGPTR+LAT+LS+SL FST+IVKLVQNVWP LI QCL
Sbjct: 61  SSLSSYSPKLSRQLQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GLGA QPAGSLFFA+L +   G LNTPLTVVA GLAKWLDIYSG+L+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           FPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLG
Sbjct: 181 FPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLG 220

[Close]

BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: gi|449453352|ref|XP_004144422.1| (PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 5.9e-89
Identity = 179/231 (77.49%), Postives = 195/231 (84.42%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP   PL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPTYPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPS+YSPKLS+QS+EIPI SLLTGPTR+LATILS+SL FST+IV+LVQNVWP LI QCL
Sbjct: 61  SSPSSYSPKLSHQSQEIPISSLLTGPTRILATILSVSLAFSTVIVQLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GLGA QPAGSLFFAA+ +R    LNTPLTVVA GLAKWLDIYSGVL+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFAAVRNRTA--LNTPLTVVAVGLAKWLDIYSGVLMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           FPN+PW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLG LG
Sbjct: 181 FPNVPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGALG 218

[Close]

BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: gi|590713329|ref|XP_007049612.1| (YGGT family protein [Theobroma cacao])

HSP 1 Score: 222.6 bits (566), Expect = 7.3e-55
Identity = 132/225 (58.67%), Postives = 151/225 (67.11%), Query Frame = 1


Query: 6   IASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSA 65
           + SQ L LR     P  +P   I++   N  L   LP++    N  +    +LAS SPS 
Sbjct: 3   LLSQTLLLRASNYLPPRNPISPIFTSKTNS-LALSLPIKPSNPNQKHPKFTLLASVSPSR 62

Query: 66  YSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCT 125
             P    +  +IP  S L   TR L T+ SI+L+ + +  K+VQN     I+Q   NP  
Sbjct: 63  TIPC---RPPQIPAQSRLKDSTRTLKTLFSIALSATIIFTKMVQNFALKTISQ---NP-- 122

Query: 126 GLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPW 185
              AF   G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSWFPNIPW
Sbjct: 123 --NAFSTVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPW 182

Query: 186 DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 183 DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 216

[Close]

BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: gi|823189697|ref|XP_012490916.1| (PREDICTED: uncharacterized protein LOC105803337 [Gossypium raimondii])

HSP 1 Score: 218.0 bits (554), Expect = 1.8e-53
Identity = 132/229 (57.64%), Postives = 160/229 (69.87%), Query Frame = 1


Query: 4   SLIASQALPLRRPVL--PPKLHPSIAIYSHSFNRPLPSPLPLRFCTANSPNHGLRVLASS 63
           SL++S  + L RP+L  PP+ +P+  I++    +P+  PL      +NS +   + +  +
Sbjct: 2   SLLSSHTI-LPRPLLHLPPR-NPNFPIFTF---KPIFLPLSPPIKPSNSVSKPPKFIPLA 61

Query: 64  SPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLV 123
           S SA  P    +S EIP  S L G TR L T+ S++L+ + +  K++QN     I+Q   
Sbjct: 62  SISA-PPATPCKSPEIPALSPLNGSTRTLKTLFSLALSATIVFTKMIQNYALKTISQ--- 121

Query: 124 NPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFP 183
           NP     A    G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSWFP
Sbjct: 122 NP----NALSTVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFP 181

Query: 184 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 182 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 217

[Close]

BLAST of Cp4.1LG03g15050 vs. NCBI nr
Match: gi|1009162119|ref|XP_015899263.1| (PREDICTED: ylmG homolog protein 1-2, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 214.2 bits (544), Expect = 2.6e-52
Identity = 133/234 (56.84%), Postives = 155/234 (66.24%), Query Frame = 1


Query: 4   SLIASQALPLRRPVLPPKLHPSIAIYSHSFNRPLPSPLPLRFCTAN-------SPNHGLR 63
           S +ASQAL L  P  P K    I  +SHS + P    L L   T++        PN   R
Sbjct: 7   SPMASQALLLTNPN-PTK---PILFHSHSLSLPHSPNLHLSLKTSSFNLRPNAKPNRNPR 66

Query: 64  VLASSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLI 123
            + + S S+ +   +  + + P    LTG TR + TILS++L    ++ KL   ++ S  
Sbjct: 67  GVFTVSASSTTATTTTTTAQSP----LTGSTRTVTTILSLALL---VLRKLPHTIFNS-- 126

Query: 124 AQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVL 183
               V+P  G   +  AG LFFAAL DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVL
Sbjct: 127 ----VSPILGPAVWSSAGPLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVL 186

Query: 184 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 231
           LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG
Sbjct: 187 LSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLG 223

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g15050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YMG12_ARATH	4.6e-49	51.28	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-2 PE=2 ...	[more]
YMG11_ARATH	1.0e-48	51.71	YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-1 PE=2 ...	[more]
YLMG2_ARATH	3.4e-12	51.39	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1	[more]
YCF19_GUITH	1.7e-11	39.74	Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1	[more]
YCF19_PORPU	3.5e-09	36.36	Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3 SV=1	[more]

BLAST of Cp4.1LG03g15050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEB0_CUCSA	4.1e-89	77.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642720 PE=4 SV=1	[more]
A0A061DLU9_THECC	5.1e-55	58.67	YGGT family protein OS=Theobroma cacao GN=TCM_002686 PE=4 SV=1	[more]
A0A0D2PA03_GOSRA	1.2e-53	57.64	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G159100 PE=4 SV=1	[more]
A0A067L9Z0_JATCU	1.2e-51	57.14	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15121 PE=4 SV=1	[more]
A0A068U6Y7_COFCA	1.3e-50	55.41	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016468001 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g15050 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27990.1	2.6e-50	51.28	YGGT family protein	[more]
AT3G07430.1	5.7e-50	51.71	YGGT family protein	[more]
AT5G21920.1	1.9e-13	51.39	YGGT family protein	[more]

BLAST of Cp4.1LG03g15050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120629\|ref\|XP_008460284.1\|	9.1e-90	77.06	PREDICTED: uncharacterized protein LOC103499156 [Cucumis melo]	[more]
gi\|449453352\|ref\|XP_004144422.1\|	5.9e-89	77.49	PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus]	[more]
gi\|590713329\|ref\|XP_007049612.1\|	7.3e-55	58.67	YGGT family protein [Theobroma cacao]	[more]
gi\|823189697\|ref\|XP_012490916.1\|	1.8e-53	57.64	PREDICTED: uncharacterized protein LOC105803337 [Gossypium raimondii]	[more]
gi\|1009162119\|ref\|XP_015899263.1\|	2.6e-52	56.84	PREDICTED: ylmG homolog protein 1-2, chloroplastic-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR003425	CCB3/YggT

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0090143	nucleoid organization
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g15050.1	Cp4.1LG03g15050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 164..229 score: 2.0
None	No IPR available	PANTHER	PTHR33219	FAMILY NOT NAMED	coord: 3..230 score: 2.4
None	No IPR available	PANTHER	PTHR33219:SF2	SUBFAMILY NOT NAMED	coord: 3..230 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g15050	Cucsa.149600	Cucumber (Gy14) v1	cgycpeB0402
Cp4.1LG03g15050	CmaCh14G011900	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g15050	CmoCh14G012140	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g15050	CmoCh01G000040	Cucurbita moschata (Rifu)	cmocpeB452
Cp4.1LG03g15050	Cla012523	Watermelon (97103) v1	cpewmB600
Cp4.1LG03g15050	Csa3G642720	Cucumber (Chinese Long) v2	cpecuB601
Cp4.1LG03g15050	MELO3C022654	Melon (DHL92) v3.5.1	cpemeB568
Cp4.1LG03g15050	ClCG07G014610	Watermelon (Charleston Gray)	cpewcgB571
Cp4.1LG03g15050	CSPI03G28230	Wild cucumber (PI 183967)	cpecpiB603
Cp4.1LG03g15050	Lsi07G006730	Bottle gourd (USVL1VR-Ls)	cpelsiB516
Cp4.1LG03g15050	MELO3C022654.2	Melon (DHL92) v3.6.1	cpemedB674
Cp4.1LG03g15050	CsaV3_3G030630	Cucumber (Chinese Long) v3	cpecucB0750
Cp4.1LG03g15050	Bhi01G002252	Wax gourd	cpewgoB0777
Cp4.1LG03g15050	CsGy3G026220	Cucumber (Gy14) v2	cgybcpeB398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g15050	Cucurbita pepo (Zucchini)	cpecpeB451
Cp4.1LG03g15050	Cucurbita maxima (Rimu)	cmacpeB493
Cp4.1LG03g15050	Silver-seed gourd	carcpeB0287