CmoCh14G012140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G012140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	YGGT family protein
Location	Cmo_Chr14 : 10335693 .. 10336400 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTCCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTCTTCCCACTCCTTCAACCGGCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCGTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGATATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGCGATCCTTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGTCAATTCTGAAAAAGTAG

mRNA sequence

ATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTCCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTCTTCCCACTCCTTCAACCGGCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCGTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGATATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGCGATCCTTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGTCAATTCTGAAAAAGTAG

Coding sequence (CDS)

ATGGCGTCTTCCCTAATCGCTTCTCAAGCTCTGCCCCTCCGACGCCCCGTCCTCCCGCCGAAGCTCCACCCTTCTATTGCCATTTCTTCCCACTCCTTCAACCGGCCACTACCTTCTCCGCTCCCCCTCCGTTTCTGCACCGCCAACTCTCCAAATCACGGCCTTAGGGTTTTAGCTTCGTCATCGCCTTCTGCTTATTCACCAAAACTTTCCAATCAATCAGAAGATATTCCGATTGGATCTCTCCTTACCGGTCCGACCCGGGTACTTGCTACTATTCTATCTATATCCTTAACATTTTCGACCTTGATTGTCAAACTGGTTCAGAATGTTTGGCCGAGTTTGATTGCCCAATGTCTCGTAAATCCATGTACTGGGCTCGGTGCCTTCCAGCCGGCTGGCTCTTTGTTCTTCGCTGCACTAGTCGACCGCCCTGGCGGAAATCTCAACACGCCTTTGACGGTGGTGGCTGCGGGGTTGGCCAAGTGGCTGGATATTTACAGTGGGGTTCTGCTGGTTAGGGTTTTGCTGAGTTGGTTCCCCAATATCCCTTGGGACCGGCAGCCACTCTCTGCAATTCGTGATCTCTGCGATCCTTACTTGAACCTGTTCCGGAATATAATCCCTCCAATATTCGACACCCTGGATGTTAGCCCACTTTTGGCTTTTGCTGTTCTGGGCACACTAGGGTCAATTCTGAAAAAGTAG

Homology

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BLAST of CmoCh14G012140 vs. Swiss-Prot
Match: YMG12_ARATH (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-2 PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.4e-50
Identity = 125/231 (54.11%), Postives = 152/231 (65.80%), Query Frame = 1


Query: 8   SQALPLRRPVLP-PKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSAY 67
           + +L LR  +L  P+L P I     S  R L   L L         H  R + SS+ ++ 
Sbjct: 6   TNSLALRASILANPRLPPPIIRPRLSLPRKLSFNLSL---------HNARTIVSSAVTSS 65

Query: 68  SPKLSNQSEDIPIGSLLTGPTRVLATILSIS-LTFSTLIVKL---VQNVWPSLIAQCLVN 127
           SP LS++    P     +  TR + T++ ++ +   +LI KL   + N+ P + A     
Sbjct: 66  SPVLSSKP---PSQFPFSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQA----- 125

Query: 128 PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPN 187
                 +F+ A  LFFA+L DRP G LNTPLTVVAAGL+KWLDIYSGVL+VRVLLSWFPN
Sbjct: 126 ------SFRTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPN 185

Query: 188 IPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           IPWDRQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLGSIL
Sbjct: 186 IPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSIL 213

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BLAST of CmoCh14G012140 vs. Swiss-Prot
Match: YMG11_ARATH (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-1 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.4e-49
Identity = 125/238 (52.52%), Postives = 154/238 (64.71%), Query Frame = 1


Query: 5   LIASQALPLRRPVLPPKLHPSIAISSHSF-NRPLPSPL-----PLRFCTANSPNHGLRVL 64
           + A  AL LR PV  P    S     H F N+P P+ L     P    +  +P   +R+ 
Sbjct: 1   MAAITALTLRSPVYLPSSATSPRF--HGFTNQPPPARLFFPLNPFPSLSIQNPK-SIRIS 60

Query: 65  ASSSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQ 124
           AS+SP   +P L  +       S LTG TR LAT+ ++++  + ++ + +       +A 
Sbjct: 61  ASASPIT-TPILQTEKSTAR-SSTLTGSTRSLATLAALAIAVTRVLAQKLS------LAI 120

Query: 125 CLVNPCTGLG---AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRV 184
              +P    G   +   AG +FFA+L DRP G LNTPLTVVA G+ KWLDIYSGVL+VRV
Sbjct: 121 QTSSPVIADGLRFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRV 180

Query: 185 LLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           LLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSI+
Sbjct: 181 LLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIV 227

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BLAST of CmoCh14G012140 vs. Swiss-Prot
Match: YLMG2_ARATH (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-12
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 214
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 192

Query: 215 LDVSPLLAFAVLGTLGS 232
           LD+SP+LAF VL    S
Sbjct: 193 LDLSPILAFLVLNAFTS 206

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BLAST of CmoCh14G012140 vs. Swiss-Prot
Match: YCF19_GUITH (Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 149 LNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNII 208
           ++   T++ +    +L IY  +LL+RV L+WFPN+ W  QP  ++  + DPYL +FR I+
Sbjct: 1   MSNSFTLLFSSFIGFLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIV 60

Query: 209 PPIFDTLDVSPLLAFAVLGTLGSIL 234
           PP+   +D+SP+L F +L  +  I+
Sbjct: 61  PPLIG-IDISPILGFILLQCIMQIV 84

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BLAST of CmoCh14G012140 vs. Swiss-Prot
Match: YCF19_PORPU (Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-09
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 153 LTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIF 212
           L ++   +A + +IY  ++L+++ L+WFP + W  +P  ++  + DPYL LFR  IPP+F
Sbjct: 8   LNLLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMF 67

Query: 213 DTLDVSPLLAFAVLGTL 230
             +D+SP+L    L  L
Sbjct: 68  G-MDMSPMLGIIFLQCL 83

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BLAST of CmoCh14G012140 vs. TrEMBL
Match: A0A0A0LEB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642720 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 3.1e-89
Identity = 179/234 (76.50%), Postives = 198/234 (84.62%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP   PL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPTYPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPS+YSPKLS+QS++IPI SLLTGPTR+LATILS+SL FST+IV+LVQNVWP LI QCL
Sbjct: 61  SSPSSYSPKLSHQSQEIPISSLLTGPTRILATILSVSLAFSTVIVQLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GLGA QPAGSLFFAA+ +R    LNTPLTVVA GLAKWLDIYSGVL+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFAAVRNRTA--LNTPLTVVAVGLAKWLDIYSGVLMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           FPN+PW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLG LG+I+
Sbjct: 181 FPNVPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGALGAIM 221

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BLAST of CmoCh14G012140 vs. TrEMBL
Match: A0A061DLU9_THECC (YGGT family protein OS=Theobroma cacao GN=TCM_002686 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.9e-55
Identity = 136/228 (59.65%), Postives = 152/228 (66.67%), Query Frame = 1


Query: 6   IASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSA 65
           + SQ L LR     P  +P   I +   N  L   LP++    N  +    +LAS SPS 
Sbjct: 3   LLSQTLLLRASNYLPPRNPISPIFTSKTNS-LALSLPIKPSNPNQKHPKFTLLASVSPSR 62

Query: 66  YSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCT 125
             P    Q   IP  S L   TR L T+ SI+L+ + +  K+VQN     I+Q   NP  
Sbjct: 63  TIPCRPPQ---IPAQSRLKDSTRTLKTLFSIALSATIIFTKMVQNFALKTISQ---NP-- 122

Query: 126 GLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPW 185
              AF   G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSWFPNIPW
Sbjct: 123 --NAFSTVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPW 182

Query: 186 DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 183 DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 219

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BLAST of CmoCh14G012140 vs. TrEMBL
Match: A0A0D2PA03_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G159100 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.3e-54
Identity = 134/232 (57.76%), Postives = 162/232 (69.83%), Query Frame = 1


Query: 4   SLIASQALPLRRPVL--PPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLASS 63
           SL++S  + L RP+L  PP+ +P+  I +    +P+  PL      +NS +   + +  +
Sbjct: 2   SLLSSHTI-LPRPLLHLPPR-NPNFPIFTF---KPIFLPLSPPIKPSNSVSKPPKFIPLA 61

Query: 64  SPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLV 123
           S SA  P    +S +IP  S L G TR L T+ S++L+ + +  K++QN     I+Q   
Sbjct: 62  SISA-PPATPCKSPEIPALSPLNGSTRTLKTLFSLALSATIVFTKMIQNYALKTISQ--- 121

Query: 124 NPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFP 183
           NP     A    G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSWFP
Sbjct: 122 NP----NALSTVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFP 181

Query: 184 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 182 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 220

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BLAST of CmoCh14G012140 vs. TrEMBL
Match: A0A067L9Z0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15121 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.9e-53
Identity = 135/234 (57.69%), Postives = 153/234 (65.38%), Query Frame = 1


Query: 11  LPLRRPVLPP-KLHPSIAISSHSFNRPLPSPL-PLRFCTANSPNHGLRVLAS-SSPSAYS 70
           L  RRP+ P   L   +     SF+ P  +P  PL F T       LRVLAS SS S+  
Sbjct: 18  LSSRRPIQPAVTLFFPVQEPLKSFSIPFDNPKKPLCFYTKQHSR--LRVLASLSSQSSQI 77

Query: 71  PKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCTGL 130
             LS  +E  P   LLTG TR + TIL+++ + S + +  +Q    S+          GL
Sbjct: 78  TTLSPSTESQP---LLTGSTRTITTILTLAFSLSRVFLTSIQKFAVSVAGASFFPNLNGL 137

Query: 131 GAFQ--------PAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 190
              +          G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSW
Sbjct: 138 ATIRGLQGDLVNSVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSW 197

Query: 191 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 198 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 246

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BLAST of CmoCh14G012140 vs. TrEMBL
Match: A0A068U6Y7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016468001 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-52
Identity = 131/235 (55.74%), Postives = 151/235 (64.26%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ L  R+P +   + P+   +++        PL L    AN P     + AS
Sbjct: 1   MASSLIASQTLIFRKPTV---ISPNNLTAAY--------PLRLSVSLAN-PKRPAMITAS 60

Query: 61  SSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIA-QC 120
           SS    +          P  SLLTG TR + T+L+++LT   L+   V N+   L     
Sbjct: 61  SSTLLSNSSAKTSGYQNPALSLLTGSTRTVTTLLALALTAPKLLADKVLNLGLQLKGFHG 120

Query: 121 LVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           L  P         AG  FFAA+ D   G LNTP TVVAAG+AKWLDIYSGVL+VRVLLSW
Sbjct: 121 LPEPLV-----HSAGPAFFAAIRDASTGTLNTPFTVVAAGMAKWLDIYSGVLMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILK 235
           FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLD+SPLLAFAVLGTLGSILK
Sbjct: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDISPLLAFAVLGTLGSILK 218

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BLAST of CmoCh14G012140 vs. TAIR10
Match: AT4G27990.1 (AT4G27990.1 YGGT family protein)

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-51
Identity = 125/231 (54.11%), Postives = 152/231 (65.80%), Query Frame = 1


Query: 8   SQALPLRRPVLP-PKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSAY 67
           + +L LR  +L  P+L P I     S  R L   L L         H  R + SS+ ++ 
Sbjct: 6   TNSLALRASILANPRLPPPIIRPRLSLPRKLSFNLSL---------HNARTIVSSAVTSS 65

Query: 68  SPKLSNQSEDIPIGSLLTGPTRVLATILSIS-LTFSTLIVKL---VQNVWPSLIAQCLVN 127
           SP LS++    P     +  TR + T++ ++ +   +LI KL   + N+ P + A     
Sbjct: 66  SPVLSSKP---PSQFPFSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQA----- 125

Query: 128 PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPN 187
                 +F+ A  LFFA+L DRP G LNTPLTVVAAGL+KWLDIYSGVL+VRVLLSWFPN
Sbjct: 126 ------SFRTASPLFFASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPN 185

Query: 188 IPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           IPWDRQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLGSIL
Sbjct: 186 IPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSIL 213

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BLAST of CmoCh14G012140 vs. TAIR10
Match: AT3G07430.1 (AT3G07430.1 YGGT family protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-50
Identity = 125/238 (52.52%), Postives = 154/238 (64.71%), Query Frame = 1


Query: 5   LIASQALPLRRPVLPPKLHPSIAISSHSF-NRPLPSPL-----PLRFCTANSPNHGLRVL 64
           + A  AL LR PV  P    S     H F N+P P+ L     P    +  +P   +R+ 
Sbjct: 1   MAAITALTLRSPVYLPSSATSPRF--HGFTNQPPPARLFFPLNPFPSLSIQNPK-SIRIS 60

Query: 65  ASSSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQ 124
           AS+SP   +P L  +       S LTG TR LAT+ ++++  + ++ + +       +A 
Sbjct: 61  ASASPIT-TPILQTEKSTAR-SSTLTGSTRSLATLAALAIAVTRVLAQKLS------LAI 120

Query: 125 CLVNPCTGLG---AFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRV 184
              +P    G   +   AG +FFA+L DRP G LNTPLTVVA G+ KWLDIYSGVL+VRV
Sbjct: 121 QTSSPVIADGLRFSLSTAGPVFFASLRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRV 180

Query: 185 LLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           LLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSI+
Sbjct: 181 LLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIV 227

[Close]

BLAST of CmoCh14G012140 vs. TAIR10
Match: AT5G21920.1 (AT5G21920.1 YGGT family protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 155 VVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 214
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 192

Query: 215 LDVSPLLAFAVLGTLGS 232
           LD+SP+LAF VL    S
Sbjct: 193 LDLSPILAFLVLNAFTS 206

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BLAST of CmoCh14G012140 vs. NCBI nr
Match: gi|659120629|ref|XP_008460284.1| (PREDICTED: uncharacterized protein LOC103499156 [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 180/234 (76.92%), Postives = 197/234 (84.19%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP PSPL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPPSPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SS S+YSPKLS Q ++IPI  LLTGPTR+LAT+LS+SL FST+IVKLVQNVWP LI QCL
Sbjct: 61  SSLSSYSPKLSRQLQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GLGA QPAGSLFFA+L +   G LNTPLTVVA GLAKWLDIYSG+L+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           FPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLGSIL
Sbjct: 181 FPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSIL 223

[Close]

BLAST of CmoCh14G012140 vs. NCBI nr
Match: gi|449453352|ref|XP_004144422.1| (PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus])

HSP 1 Score: 336.3 bits (861), Expect = 4.4e-89
Identity = 179/234 (76.50%), Postives = 198/234 (84.62%), Query Frame = 1


Query: 1   MASSLIASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLAS 60
           MASSLIASQ+LPLRRP+LPP L            RP   PL L   T  SPN GLRVLAS
Sbjct: 1   MASSLIASQSLPLRRPLLPPNLR-----------RPPTYPLLLPLSTVKSPNLGLRVLAS 60

Query: 61  SSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCL 120
           SSPS+YSPKLS+QS++IPI SLLTGPTR+LATILS+SL FST+IV+LVQNVWP LI QCL
Sbjct: 61  SSPSSYSPKLSHQSQEIPISSLLTGPTRILATILSVSLAFSTVIVQLVQNVWPILIPQCL 120

Query: 121 VN-PCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 180
           +N PC+GLGA QPAGSLFFAA+ +R    LNTPLTVVA GLAKWLDIYSGVL+VRVLLSW
Sbjct: 121 INNPCSGLGALQPAGSLFFAAVRNRTA--LNTPLTVVAVGLAKWLDIYSGVLMVRVLLSW 180

Query: 181 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           FPN+PW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLG LG+I+
Sbjct: 181 FPNVPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGALGAIM 221

[Close]

BLAST of CmoCh14G012140 vs. NCBI nr
Match: gi|590713329|ref|XP_007049612.1| (YGGT family protein [Theobroma cacao])

HSP 1 Score: 223.4 bits (568), Expect = 4.2e-55
Identity = 136/228 (59.65%), Postives = 152/228 (66.67%), Query Frame = 1


Query: 6   IASQALPLRRPVLPPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLASSSPSA 65
           + SQ L LR     P  +P   I +   N  L   LP++    N  +    +LAS SPS 
Sbjct: 3   LLSQTLLLRASNYLPPRNPISPIFTSKTNS-LALSLPIKPSNPNQKHPKFTLLASVSPSR 62

Query: 66  YSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCT 125
             P    Q   IP  S L   TR L T+ SI+L+ + +  K+VQN     I+Q   NP  
Sbjct: 63  TIPCRPPQ---IPAQSRLKDSTRTLKTLFSIALSATIIFTKMVQNFALKTISQ---NP-- 122

Query: 126 GLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPW 185
              AF   G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSWFPNIPW
Sbjct: 123 --NAFSTVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPW 182

Query: 186 DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 183 DRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 219

[Close]

BLAST of CmoCh14G012140 vs. NCBI nr
Match: gi|823189697|ref|XP_012490916.1| (PREDICTED: uncharacterized protein LOC105803337 [Gossypium raimondii])

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 134/232 (57.76%), Postives = 162/232 (69.83%), Query Frame = 1


Query: 4   SLIASQALPLRRPVL--PPKLHPSIAISSHSFNRPLPSPLPLRFCTANSPNHGLRVLASS 63
           SL++S  + L RP+L  PP+ +P+  I +    +P+  PL      +NS +   + +  +
Sbjct: 2   SLLSSHTI-LPRPLLHLPPR-NPNFPIFTF---KPIFLPLSPPIKPSNSVSKPPKFIPLA 61

Query: 64  SPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLV 123
           S SA  P    +S +IP  S L G TR L T+ S++L+ + +  K++QN     I+Q   
Sbjct: 62  SISA-PPATPCKSPEIPALSPLNGSTRTLKTLFSLALSATIVFTKMIQNYALKTISQ--- 121

Query: 124 NPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFP 183
           NP     A    G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSWFP
Sbjct: 122 NP----NALSTVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFP 181

Query: 184 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 182 NIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 220

[Close]

BLAST of CmoCh14G012140 vs. NCBI nr
Match: gi|802546464|ref|XP_012084994.1| (PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas])

HSP 1 Score: 215.3 bits (547), Expect = 1.1e-52
Identity = 135/234 (57.69%), Postives = 153/234 (65.38%), Query Frame = 1


Query: 11  LPLRRPVLPP-KLHPSIAISSHSFNRPLPSPL-PLRFCTANSPNHGLRVLAS-SSPSAYS 70
           L  RRP+ P   L   +     SF+ P  +P  PL F T       LRVLAS SS S+  
Sbjct: 18  LSSRRPIQPAVTLFFPVQEPLKSFSIPFDNPKKPLCFYTKQHSR--LRVLASLSSQSSQI 77

Query: 71  PKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPSLIAQCLVNPCTGL 130
             LS  +E  P   LLTG TR + TIL+++ + S + +  +Q    S+          GL
Sbjct: 78  TTLSPSTESQP---LLTGSTRTITTILTLAFSLSRVFLTSIQKFAVSVAGASFFPNLNGL 137

Query: 131 GAFQ--------PAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVRVLLSW 190
              +          G LFFA+L DRP G LNTPLTVVAAGLAKWLDIYSGVL+VRVLLSW
Sbjct: 138 ATIRGLQGDLVNSVGPLFFASLKDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSW 197

Query: 191 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 234
           FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 198 FPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 246

The following BLAST results are available for this feature:

BLAST of CmoCh14G012140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YMG12_ARATH	2.4e-50	54.11	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-2 PE=2 ...	[more]
YMG11_ARATH	3.4e-49	52.52	YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=YLMG1-1 PE=2 ...	[more]
YLMG2_ARATH	2.5e-12	49.35	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana GN=YLMG2 PE=2 SV=1	[more]
YCF19_GUITH	1.7e-11	37.65	Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1	[more]
YCF19_PORPU	5.9e-09	36.36	Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3 SV=1	[more]

BLAST of CmoCh14G012140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEB0_CUCSA	3.1e-89	76.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G642720 PE=4 SV=1	[more]
A0A061DLU9_THECC	2.9e-55	59.65	YGGT family protein OS=Theobroma cacao GN=TCM_002686 PE=4 SV=1	[more]
A0A0D2PA03_GOSRA	9.3e-54	57.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G159100 PE=4 SV=1	[more]
A0A067L9Z0_JATCU	7.9e-53	57.69	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15121 PE=4 SV=1	[more]
A0A068U6Y7_COFCA	2.3e-52	55.74	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016468001 PE=4 SV=1	[more]

BLAST of CmoCh14G012140 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27990.1	1.3e-51	54.11	YGGT family protein	[more]
AT3G07430.1	1.9e-50	52.52	YGGT family protein	[more]
AT5G21920.1	1.4e-13	49.35	YGGT family protein	[more]

BLAST of CmoCh14G012140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120629\|ref\|XP_008460284.1\|	1.8e-90	76.92	PREDICTED: uncharacterized protein LOC103499156 [Cucumis melo]	[more]
gi\|449453352\|ref\|XP_004144422.1\|	4.4e-89	76.50	PREDICTED: uncharacterized protein LOC101222332 [Cucumis sativus]	[more]
gi\|590713329\|ref\|XP_007049612.1\|	4.2e-55	59.65	YGGT family protein [Theobroma cacao]	[more]
gi\|823189697\|ref\|XP_012490916.1\|	1.3e-53	57.76	PREDICTED: uncharacterized protein LOC105803337 [Gossypium raimondii]	[more]
gi\|802546464\|ref\|XP_012084994.1\|	1.1e-52	57.69	PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003425	CCB3/YggT

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G012140.1	CmoCh14G012140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 164..232 score: 1.8
None	No IPR available	PANTHER	PTHR33219	FAMILY NOT NAMED	coord: 3..234 score: 1.7
None	No IPR available	PANTHER	PTHR33219:SF2	SUBFAMILY NOT NAMED	coord: 3..234 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G012140	Cucsa.149600	Cucumber (Gy14) v1	cgycmoB0410
CmoCh14G012140	CmaCh14G011900	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G012140	Cla012523	Watermelon (97103) v1	cmowmB218
CmoCh14G012140	Csa3G642720	Cucumber (Chinese Long) v2	cmocuB230
CmoCh14G012140	MELO3C022654	Melon (DHL92) v3.5.1	cmomeB211
CmoCh14G012140	ClCG07G014610	Watermelon (Charleston Gray)	cmowcgB230
CmoCh14G012140	CSPI03G28230	Wild cucumber (PI 183967)	cmocpiB234
CmoCh14G012140	Lsi07G006730	Bottle gourd (USVL1VR-Ls)	cmolsiB244
CmoCh14G012140	Cp4.1LG03g15050	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G012140	MELO3C022654.2	Melon (DHL92) v3.6.1	cmomedB240
CmoCh14G012140	CsaV3_3G030630	Cucumber (Chinese Long) v3	cmocucB0273
CmoCh14G012140	Cla97C07G141490	Watermelon (97103) v2	cmowmbB255
CmoCh14G012140	Bhi01G002252	Wax gourd	cmowgoB0310
CmoCh14G012140	CsGy3G026220	Cucumber (Gy14) v2	cgybcmoB283

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G012140	CmoCh01G000040	Cucurbita moschata (Rifu)	cmocmoB202

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G012140	Wax gourd	cmowgoB0319
CmoCh14G012140	Cucurbita maxima (Rimu)	cmacmoB461
CmoCh14G012140	Cucurbita pepo (Zucchini)	cmocpeB244
CmoCh14G012140	Silver-seed gourd	carcmoB0283