Cp4.1LG03g12690 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g12690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionS1 RNA-binding domain protein
LocationCp4.1LG03 : 9991539 .. 9997967 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCTATAAATTAGGAACCAAACATAAGAAAGAAATGAAATGGGCGAGACGTGTATGCTTTTGAGTCACCCAAATAACGGATTCCTTCCCATCGGATTTGCGGCAGTTCGTGGCTTTCCATTTCGAGCTCAATCCGAATGCTTTGCCACCGCGCTCCTCCCCGCCATTTCCTTCCCACTCACCTCCCAACATGCCAATCTTTGCTGCTACAACGCTCGGATCTCTCTCCGCTCATTCATTTCTTGCACTCTCCGCCTCCACTGATGCTTCCAACTCCCTTTCAACCTCCTTCTTTTTAACCCATAAATCCCCCTCTAAACGCCCTTCCAATTTCGCCGCCAGAGTTTCCCTTTCCGGAAAACCGGACCCCATTGCCGGAGTTCTGGAAAGTTCGCCGTCATCGCCGGAGTCAGTTCGACGTGCTCGGGTGAGTACATTGTTCATCCCTTCTTTCTTTTAATCGAACGACTGGGGTTTTCTTTTATATCCGATTTTCTCTTTAAATGAATCACTCTGGAAGTAACAAGTTTGCTGTATTCGAATTCGAATTCTGGTTCCAAGCGCTGAAGGTTTTGAATAATTCATTAGAAGTGTATGTGTGAAGCTTTTGGCACTCAATTCCGTCAAGATTTTGAGATTAGGTTTTGATTTTCACCGCCAGATATTCTGTTTCCACTCAATTATTTCACTTAGGGCATTGAATTGCAGCCTTCTAGTTTTGTTGTTCAACCATGCAATATCAAGGGCTAAAGATGATGCCATGGGTTCAAAAGGATCATCATTTAGCCATCATGATTGGATGGTTGTTGTTGGGAGCAAAAAGTTTATGCTTAGCCTGAATTTGTATGAGTATTGTTAAACTCTTATATTCTAATACTTGGTTTCTGCAAAGAAGTAGAGATCTGCTGATTGGAAGACAGCGAGGGAATACCTTGATAGTGGATTTATCTTCAAAGGTAGGATTGAAGGTTCGAATGCTGGAGGTTTACTCGTCCGATTTTATTCTCTTGTGGGGTTTCTTCCATTCCCTCTATTGAGCCCTGCTCATTCTTGTAAAGGTACAAGTTCTCTTAATCCTTTGTGCTATATGCTATTAGACGAAGTCAGTAGTTTACCCAATAATGACTTGAATTGCTTGAGGTATATTTGTTTCAAGTTTTTTTTAACATTAATTTCTTGCAGAACCATACAAGAGTATCCAAGATATTGCAAAAAGCTTAATTGGTTCACTTATACCAGTGAAGGTAGTTAACTACTAAAGTTGTCCTTAATTTTAATCGTTTATAGTTTTGAAAGCATCTCCTCTAGTTGGCTGAAGACTGGTGTATTTCTATTTGCTTCGCCACTCCCTAGTGTCCAACATGAGCACAAACTAGGTCATGTATCAAACGTGTGTCCAACACACCAAAATAAAACTCATTTTTTATATTTGTTTCTTTTAAGTTTTCTTTTGAAACTCAGACATTTAGTACTTTCAGTTAGCCATATGTTCAAAGAATCTGAGACGGATATGAGGGGTATATCTTTGTTCAAGGGGAGGAGACTAAGGGCGCGATAGTCCTGACACCATGTACCCCACAATGTAATTTAGGCTCGTGCTTTGTCTAGGTTGTTGCCTTGGGGATGTCAAGAACAAACTCTCGTAGTCAATTGAGACGATTGAGAGTGGATGGATGAGTGTAGGTGTAAGTGGTACTTTGTTCAAGGTGCAAACAATGTCTCACATCGACTAGGCAAGCGAGAGATCCATGCTTTATAAGTGAGAACAATTATTTCTATTGGTATGAGGCTTTTTAGGTGAATCAAAAGCAAAACTACGAGGTCTTAAACCAAAAGTCGATAATATCGTACCATTGTGGAAATATGTGGAGGGTCGATTGTCCATAACAGAATTTTCATTTTTGTACGGAGTGGGGCACCAAAGACTTCCTTGTATTGAATCTTTCTTTCTATTTTCTTTCTCCGTGTTCTTCAGCTTTAGCTGGGACAGATGCTTCTTTGGCTCCTGTAACTACTAGAGAAAATGATCACTCTCCCCTCCGTTTGAAATTTCTTTCTCACTGTCTCCACTTTGCTCCCTCTTATATTCTTCCTTTCCTCTGTCAAATATTTTCCTGAAGTTCCTCAAATCATTTCCCAAACTATGCACCAACATCTCTTTTGAAATTGAACTATGGGATGGTACCCTTGCTTCCTCTGTTCTAAATCTAATGAATTAAAACTCAACTGATCCAATTTAGGTCCAAATTTTTTATTTGAATCATAATTGGTCAATGAAGAAAGTAAAACACTTGGATCATGTGGCTACACCATATTACACATATTCATAAAGTGAAACAGAGAAAGTTGTAATGTAATTGTTTATGAGGGAAATGAAGGAAAAAAATTAGGGGTCTATTCCATTTGGGCGAGATAGTTCTTTCATCATTCATATTCACAGTTGACCATCCCTGCTTTTGAAATACTTAGGTGAGGATACATTAAACCCTGTCTTTTCTTATTTTCTAGGTTATCCAAGCAGATGAGAAAAACAAGAATTTGATATTTTCAGAGAAGGAAGCTGCATGGTCAAAGTTTTCTGAGCAAGTTGGTGTGGGAGATGTCTATGAAGCTAGAGTTGGCTCTGTGGAGGATTATGGTGCCTTTGTACATTTACGTTTCTCTGATGGTGATATTTTGTGTTCTATTAAGCTTATGTACTGATATATTAAGAAATCAATTACCACTTATTTTCCAAAATTCGACAGGTCTCTATCATCTTACTGGGCTAGTACATATATCAGAAGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATCTTAAGCGAGGGTGACGAAGTGAGGGTGAAAGTCATTGATGTTGATAGGCAAGTCTTGTCAGATTTCCTTCTGTCACCAGCTAATGTGCACCTTCTAGGAAATTCTGTTATTTGAAGTATTTTTATCCACTATAAAACATATACAAGGCTTTCTCTTGGTTACAAATAATTGTTATATAGTGTTATAATGAAGTGCAAATTATGAGCTCGATCATATTCAGCGCAAGTTTGTTAGCTAGCTAGCTACAGCTGTTATTGTTTGTAATTAGTGCTGTAACTAGAGACGGGTATAGATATTGTACCAAACTTACTTGTGAGATCGCACATCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGCGTGGAAACCTCTCCTTAAGCAGACACGTATTAAAAACCTTGAGGGGAAGCCCGAAAGGAAAAGCCCAAAGAGTACAATATCTGCTAGCAGTGGGCTTAGGCTGTTACAAATGATATTAGAGTCAGACACCGGAGGGTGTGCCAGCGAGGACGTTGAGCCTAGAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTATGTATAAGGGTGTGGAAACTTCTCCCTAGTAGACGCATATTAAAAACCTTGAGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCAAGTGGTGGGCTTGAATTGTTACATTATCGATGAAACATGAAATATAGACTCGTTCTTTGGTGGATGTAGACCAATTATTGGGTCGAACCACTTAAAAATCTTGTGAGTTCCTCTGCTGTTTCTTTCCCTCTTAATCTTTGTAATTGTTCTGATTCTGGTTAAAACCCAGATTAGCCATAGGCGATAGATGATTTTGTTATTTTCGCAGAAGGTTAAGAAATGGAAAACGAGGAAAATGTGATAAGACTAGCTAAATTTATATCATCTCATGCTTTTAGGCCATTGCCTATTGCCATGCATTGTCAGCTGTCTTATTGGTTTTATGCAGGGACAAGTCGAGGATCACATTATCGATTAAACAACTCGAGGAAGATCCACTTTTGGAAACATTGGACAAAGTAATACCGCAGGTTAGTGAAGCATTGATGTACGCATTTAGTCAGTCTTTTCAACTACTTTCATCTCATAACTGAGCTTTAACTACATGAACATCATAATTTATTATAACAGGATGATTCTGCTGAACCTGATTCGTTCGGACCTAAAAGTGACAGCGAAATCATACCCCTTCCTGGACTTGATACAATATTTGAAGAGCTACTGCAAGAAGAAGGGTATGTTTCTCTAATCTTCAAAGCTATGGAGAGCACTGTCTAAAAAGATTACTTATAACAACAATGTATGGACATCAACAGTACCAATAAATATGCATTGGCTTGTTCTGATTTTTTGAGTTTAACTTTTGTGTTAGACAGACAATGTGATGTACATACAAATATTTATATACATTCATACACATACGTATAGGGTTCAAATATGAGATGAATTGGCTGACACTGAACAAACTAAAGAGGGCTTGTCTGGGACTTCGTGCATTTTTTTCACTTCATTGATAAACTTTGTTAGATTTTTAGTCATTGGTAGGGATCATATTATCAGCATGTGAGTTCTCAAGTTATATTAACCTTGAGTTAGCAGTATGATCTTAATATGATTAGTTTGAATATCAGTATAGAAGATGTTCATATCAACCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATGTAAGATGGTTTGTTACTAAGAATATTATGTGGGGTTTAGTCATTTGCTTCAATTTCTCAATTGTCATCTTACTGTTACTGTAGGCACCTCCTGTTGAAAAGAAGTTCACTCTCCTTGCTCGTGCCGGGAGGCAGGTAGTTGTTTCTCCTTCTCACACATGCACAAGCATGAGCACATGCACACAGATACCAACTGTAACGGCCCAAACCCCCCGCTAGCAGATATTGTTCTCTTTGAGCTTCCCATTTCGGGTTTCTCCTTAAGGTTTTTAAAACGCGTCTGTTAGGGGGAGGTTTCCACGCCCTTATAAAGAAAGCTGTATTTCCCTCTTAAACCGATGTGGGATCTCACAATTTACTCCCCTTAAGACCCAGCGTCCTTGCTGGCACACCGCTCAGTGTCTGGTTCTGATACCATTTGTAACAGTCAAAACCTACTGCTAGCAGATATTGTCTTCTTTGGGCTTTCTCTTTCGGGCTTCTTCTAAACAACTTTAAAACGCGTCTATTAAGGGGAGATTTCCACACCCTTATAATGAATACTTTGTTCTCCTCCCCAATCAATATAGGATCTCACACTAACATCAATGGTTCTTGAATTTAGGTTCAAGAAATACAACTGACAACATCACTCGATCAGGAAGGTATTAAAAGGGCATTGCAGCGAGTGTTGGAACGTGTCCCATGATTTGTGAACAGAGTTGAACAATTCGATTTTGAATGAAGCTGTCTGTAAAGAAGATGATATCAATTCAATTGTTTCAAGTAAGTTGTATATCTTGTCTGGTCTCTACGTCTATTCTAATGGTAAAAGGTTCTTGTAAGCATGAATGCTCGATCATTGTCTGACAGCCTTCATCTTGGAGGATTTGTAGTCTTTGCTTCTCATAGCCAATATATATATATATATTGTATACGTATATTTCCTTTTTTCTTATTTCATAATCATTTCTGCGGAGAGATATAAGGCTCGTCTAACTTGATTTGACCCATGACCTTATAGATCAAGTTTTCTCCATCTCAGTTTAGCGTTAAATGAACATCTCTAAACTTAATCATGTGATATTAGTTATCATGAAACTTTTGTTATTCTAGTACAATTCGATGCCATGTTCTCTTCTCGTTAGCGCTGAATAGTGTTTGATCACTTCACCAATAAGATAAATATAATATCTTCCTCAATGACGACTTAGAAAAAGTTCATATGGGTATACCTACCGATATGGAATCCACAAAAGAATTACCAGTAAAATGCACGAACTCTAAAAAATATTCTTCGGGGCTTGGAACGACATATTGTAAATTCAGCACCTAGTACATATTGTCTTATTTGAGTTTTCTCAAACTTTTTAAAATGCGTATGTTAATGAGATGTTTCCACACACTTATACCGATGTGAGATCTCACAATCCACCCTCGTTCGGGTCCTAGCGTCTTTGTTGGCACACTGTCTTATGTCCACCCATTTCAGGGCTCCAGTCTCCTTGTGGGCACATCACCCAGTGTTTGACTATGATACCATTTATACGACCAAAACCCACTACTAACAGATATTATCCTGTTTGAGCTTTTCCTTTCGAGTTTTTCATCAAGGGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCTTGTTATAAAAAATGTTTCGTTCTCCTCCCCAACTGATGTGAGATCTCAAAGATAGTGTTGATCATGAAACTTTCAAAGTATAGAAATTAAACCCTAAACCTTAGTACATTCGAAAATTGTAGTGACTCCTTGTTAGCAAGGGCCCTGTACGTTTGAGGCACATGACATATTTAGAGTCAACTCCTATATGTATGCTTTACAGAGTAAAAGGTTT

mRNA sequence

TATCTATAAATTAGGAACCAAACATAAGAAAGAAATGAAATGGGCGAGACGTTTCGTGGCTTTCCATTTCGAGCTCAATCCGAATGCTTTGCCACCGCGCTCCTCCCCGCCATTTCCTTCCCACTCACCTCCCAACATGCCAATCTTTGCTGCTACAACGCTCGGATCTCTCTCCGCTCATTCATTTCTTGCACTCTCCGCCTCCACTGATGCTTCCAACTCCCTTTCAACCTCCTTCTTTTTAACCCATAAATCCCCCTCTAAACGCCCTTCCAATTTCGCCGCCAGAGTTTCCCTTTCCGGAAAACCGGACCCCATTGCCGGAGTTCTGGAAAGTTCGCCGTCATCGCCGGAGTCAGTTCGACGTGCTCGGAGATCTGCTGATTGGAAGACAGCGAGGGAATACCTTGATAGTGGATTTATCTTCAAAGGTAGGATTGAAGGTTCGAATGCTGGAGGTTTACTCGTCCGATTTTATTCTCTTGTGGGGTTTCTTCCATTCCCTCTATTGAGCCCTGCTCATTCTTGTAAAGAACCATACAAGAGTATCCAAGATATTGCAAAAAGCTTAATTGGTTCACTTATACCAGTGAAGGTTATCCAAGCAGATGAGAAAAACAAGAATTTGATATTTTCAGAGAAGGAAGCTGCATGGTCAAAGTTTTCTGAGCAAGTTGGTGTGGGAGATGTCTATGAAGCTAGAGTTGGCTCTGTGGAGGATTATGGTGCCTTTGTACATTTACGTTTCTCTGATGGTCTCTATCATCTTACTGGGCTAGTACATATATCAGAAGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATCTTAAGCGAGGGTGACGAAGTGAGGTCGAGGATCACATTATCGATTAAACAACTCGAGGAAGATCCACTTTTGGAAACATTGGACAAAGTAATACCGCAGGATGATTCTGCTGAACCTGATTCGTTCGGACCTAAAAGTGACAGCGAAATCATACCCCTTCCTGGACTTGATACAATATTTGAAGAGCTACTGCAAGAAGAAGGTATAGAAGATGTTCATATCAACCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATAGTAAAAGGTTT

Coding sequence (CDS)

ATGAAATGGGCGAGACGTTTCGTGGCTTTCCATTTCGAGCTCAATCCGAATGCTTTGCCACCGCGCTCCTCCCCGCCATTTCCTTCCCACTCACCTCCCAACATGCCAATCTTTGCTGCTACAACGCTCGGATCTCTCTCCGCTCATTCATTTCTTGCACTCTCCGCCTCCACTGATGCTTCCAACTCCCTTTCAACCTCCTTCTTTTTAACCCATAAATCCCCCTCTAAACGCCCTTCCAATTTCGCCGCCAGAGTTTCCCTTTCCGGAAAACCGGACCCCATTGCCGGAGTTCTGGAAAGTTCGCCGTCATCGCCGGAGTCAGTTCGACGTGCTCGGAGATCTGCTGATTGGAAGACAGCGAGGGAATACCTTGATAGTGGATTTATCTTCAAAGGTAGGATTGAAGGTTCGAATGCTGGAGGTTTACTCGTCCGATTTTATTCTCTTGTGGGGTTTCTTCCATTCCCTCTATTGAGCCCTGCTCATTCTTGTAAAGAACCATACAAGAGTATCCAAGATATTGCAAAAAGCTTAATTGGTTCACTTATACCAGTGAAGGTTATCCAAGCAGATGAGAAAAACAAGAATTTGATATTTTCAGAGAAGGAAGCTGCATGGTCAAAGTTTTCTGAGCAAGTTGGTGTGGGAGATGTCTATGAAGCTAGAGTTGGCTCTGTGGAGGATTATGGTGCCTTTGTACATTTACGTTTCTCTGATGGTCTCTATCATCTTACTGGGCTAGTACATATATCAGAAGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATCTTAAGCGAGGGTGACGAAGTGAGGTCGAGGATCACATTATCGATTAAACAACTCGAGGAAGATCCACTTTTGGAAACATTGGACAAAGTAATACCGCAGGATGATTCTGCTGAACCTGATTCGTTCGGACCTAAAAGTGACAGCGAAATCATACCCCTTCCTGGACTTGATACAATATTTGAAGAGCTACTGCAAGAAGAAGGTATAGAAGATGTTCATATCAACCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATAGTAAAAGGTTT

Protein sequence

MKWARRFVAFHFELNPNALPPRSSPPFPSHSPPNMPIFAATTLGSLSAHSFLALSASTDASNSLSTSFFLTHKSPSKRPSNFAARVSLSGKPDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVRSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNSKRF
Homology
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BLAST of Cp4.1LG03g12690 vs. Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.7e-18
Identity = 61/203 (30.05%), Postives = 101/203 (49.75%), Query Frame = 1 

Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           I G  E+  S   S+R+ +    W+  R+      + KG+I G+N GG++     L GF+
Sbjct: 151 IIGENEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFV 210

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PF  +S   S +E           L+   IP+K ++ DE+   L+ S ++ A +    Q+
Sbjct: 211 PFSQISSKSSAEE-----------LLEKEIPLKFVEVDEEQSRLVMSNRK-AMADSQAQL 270

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV-- 274
           G+G V    V S++ YGAF+ +        + GL+H+S++S D V D+  +L  GD +  
Sbjct: 271 GIGSVVTGTVQSLKPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKV 330

Query: 275 --------RSRITLSIKQLEEDP 288
                   R R++LS K+LE  P
Sbjct: 331 MILSHDRERGRVSLSTKKLEPTP 335

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BLAST of Cp4.1LG03g12690 vs. Swiss-Prot
Match: RPS1_ARATH (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-17
Identity = 61/203 (30.05%), Postives = 99/203 (48.77%), Query Frame = 1 

Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           I G  ES  S   S+R  +    W+  R+      I K ++ G+N GGL+     L GF+
Sbjct: 154 IIGENESDDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFV 213

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PF  +S   + +E           L+   IP+K ++ DE+   L+ S ++A  +    Q+
Sbjct: 214 PFSQISSKAAAEE-----------LLEKEIPLKFVEVDEEQTKLVLSNRKAV-ADSQAQL 273

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV-- 274
           G+G V    V S++ YGAF+ +        + GL+H+S++S D V D+  +L  GD +  
Sbjct: 274 GIGSVVLGVVQSLKPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKV 333

Query: 275 --------RSRITLSIKQLEEDP 288
                   R R++LS K+LE  P
Sbjct: 334 MILSHDRDRGRVSLSTKKLEPTP 338

[Close]
BLAST of Cp4.1LG03g12690 vs. Swiss-Prot
Match: RS1_NEIMB (30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B (strain MC58) GN=rpsA PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-15
Identity = 64/192 (33.33%), Postives = 94/192 (48.96%), Query Frame = 1 

Query: 108 SVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKE 167
           S  +A+R+ADW    E +++G I  G I G   GGL V   S+  FLP  L+        
Sbjct: 86  SREKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMISSIRAFLPGSLVDV-----R 145

Query: 168 PYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQ-------VGVGDVY 227
           P K          G  I  KVI+ D+K  N++ S +    +   E+       +  G V 
Sbjct: 146 PVKDTSHFE----GKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVI 205

Query: 228 EARVGSVEDYGAFVHLRFSDGLYHLTGLV-----HISEVSWDLVQDVRDILSEGDEVRSR 287
           +  V ++ DYGAFV L   DGL H+T L      H SEV  ++ Q+V   + + D+ + R
Sbjct: 206 KGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEV-LEVGQEVEAKVLKFDQEKQR 265

[Close]
BLAST of Cp4.1LG03g12690 vs. Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-15
Identity = 56/190 (29.47%), Postives = 89/190 (46.84%), Query Frame = 1 

Query: 108 SVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKE 167
           S+RR      W+  R+        +  +  +N GG LVR   L GF+P   +S     KE
Sbjct: 99  SIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHIS-TRKAKE 158

Query: 168 PYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVGSV 227
                      L+G  +P+K ++ DE    L+ S + A   +   ++ VG+V    V  +
Sbjct: 159 ----------DLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGI 218

Query: 228 EDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV----------RSRIT 287
           + YGAF+ +        ++GL+HISE+S D ++    + +  DEV          R RI+
Sbjct: 219 KPYGAFIDIG------GVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRIS 271

[Close]
BLAST of Cp4.1LG03g12690 vs. Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rps1A PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-14
Identity = 55/190 (28.95%), Postives = 87/190 (45.79%), Query Frame = 1 

Query: 108 SVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKE 167
           S+RR      W+  R+        +  +  +N GG LVR   L GF+P   +S A   KE
Sbjct: 98  SIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHIS-AREAKE 157

Query: 168 PYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVGSV 227
                      L+G  +P+K ++ DE+   L+ S + A   +    + V  V    V  +
Sbjct: 158 ----------DLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGI 217

Query: 228 EDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV----------RSRIT 287
           + YGAF+ +        ++GL+HISE+S D +     + +  DE+          R RI+
Sbjct: 218 KPYGAFIDIG------GVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRIS 270

[Close]
BLAST of Cp4.1LG03g12690 vs. TrEMBL
Match: A0A0A0KTX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012510 PE=4 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.8e-141
Identity = 278/339 (82.01%), Postives = 298/339 (87.91%), Query Frame = 1 

Query: 35  MPIFAATTLGSLSAHSFLALSAST-DASN--SLSTSFFLTHKSPSKRPSNFAARVSLSGK 94
           MPIF AT + S+SAHSFL+L AST DAS+  S S+SF L  KSPSKR S F +RVSLSGK
Sbjct: 1   MPIFVAT-IASVSAHSFLSLLASTSDASSTSSSSSSFILPLKSPSKRSSIFPSRVSLSGK 60

Query: 95  PDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 154
           PDPIAGVL++SP   ESVRRARRSADWK AREYLDSGFI++GRIEGSNAGGLLVRFYSLV
Sbjct: 61  PDPIAGVLDTSP---ESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLV 120

Query: 155 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 214
           GFLPFP LSP+HSCKEPYKSIQDIAKSLIGSLI VKVIQADEKN+ LIFSEKEAA SKFS
Sbjct: 121 GFLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFS 180

Query: 215 EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 274
            QV VGDVYE +VGSVEDYGAFVHLR SDGLYHLTGLVH+SEVSWDLVQDVRDILSEGDE
Sbjct: 181 GQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDE 240

Query: 275 V----------RSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 334
           V          +SRITLSI+QLEEDPLLETLDKVIPQ+ SAEPDSFGPK DSEIIPLPGL
Sbjct: 241 VTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQESSAEPDSFGPKGDSEIIPLPGL 300

Query: 335 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 361
           +TI EELLQEEGI DV +NRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 ETIIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNA 335

[Close]
BLAST of Cp4.1LG03g12690 vs. TrEMBL
Match: D7U9K6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00830 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 4.7e-113
Identity = 224/319 (70.22%), Postives = 257/319 (80.56%), Query Frame = 1 

Query: 55  SASTDASNSLSTSFFLTHKSPSKR-PSNFA-ARVSLSGKPDPIAGVLESSPSSP-ESVRR 114
           SAS   + S  +SF+   +SP +R P + A ARVS  G     AGV+E SP  P +++R+
Sbjct: 31  SASLLINPSKISSFY--RRSPLRRSPFHIATARVSTEGSEQATAGVVEGSPPPPFDAIRQ 90

Query: 115 ARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKEPYKS 174
           ARRSADWK AR +L+SGFI++GRIEG N GGLLVRFYSLVGFLPFP LSP+HSCKEP+K+
Sbjct: 91  ARRSADWKAARAHLESGFIYEGRIEGFNGGGLLVRFYSLVGFLPFPQLSPSHSCKEPHKT 150

Query: 175 IQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVGSVEDYG 234
           IQ+IAK LIGSLI VKVI ADE+ + LIFSEKEAAW KFS+Q+ +GD++EA VGSVEDYG
Sbjct: 151 IQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGDIFEAMVGSVEDYG 210

Query: 235 AFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVR----------SRITLSIK 294
           AFVHLRF DGLYHLTGLVH+SEVSWDLVQDVRD+L+EGDEVR          SRITLSIK
Sbjct: 211 AFVHLRFPDGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVKVDRVKSRITLSIK 270

Query: 295 QLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTIFEELLQEEGIEDVHINR 354
           QLEEDPLLETLDKVIPQD S  PDS       +I PLPGL+TIFEELLQEEGI DV I+R
Sbjct: 271 QLEEDPLLETLDKVIPQDGSTGPDSLRTSDSYDIEPLPGLETIFEELLQEEGISDVRISR 330

Query: 355 QGFEKRVVSQDLQLWLSNS 361
           QGFEKRVVSQDLQLWLSN+
Sbjct: 331 QGFEKRVVSQDLQLWLSNA 347

[Close]
BLAST of Cp4.1LG03g12690 vs. TrEMBL
Match: A5BZI0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006784 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 3.0e-107
Identity = 224/347 (64.55%), Postives = 257/347 (74.06%), Query Frame = 1 

Query: 55  SASTDASNSLSTSFFLTHKSPSKR-PSNFA-ARVSLSGKPDPIAGVLESSPSSP-ESVRR 114
           SAS   + S  +SF+   +SP +R P + A ARVS  G     AGV+E SP  P +++R+
Sbjct: 31  SASLLINPSKISSFY--RRSPLRRSPFHIATARVSTEGSEQATAGVVEGSPPPPFDAIRQ 90

Query: 115 ARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKEPYKS 174
           ARRSADWK AR +L+SGFI++GRIEG N GGLLVRFYSLVGFLPFP LSP+HSCKEP+K+
Sbjct: 91  ARRSADWKAARAHLESGFIYEGRIEGFNGGGLLVRFYSLVGFLPFPQLSPSHSCKEPHKT 150

Query: 175 IQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVGSVEDYG 234
           IQ+IAK LIGSLI VKVI ADE+ + LIFSEKEAAW KFS+Q+ +GD++EA VGSVEDYG
Sbjct: 151 IQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGDIFEAMVGSVEDYG 210

Query: 235 AFVHLRFSD----------GLYHLTGLVHISEVSWDLVQDVRDILSEGDEVR-------- 294
           AFVHLRF D          GLYHLTGLVH+SEVSWDLVQDVRD+L+EGDEVR        
Sbjct: 211 AFVHLRFPDGTSFSVTYITGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVKVDR 270

Query: 295 --SRITLSIKQLEEDPLLETLDKVIP------------------QDDSAEPDSFGPKSDS 354
             SRITLSIKQLEEDPLLETLDKVIP                  QD S  PDS       
Sbjct: 271 VKSRITLSIKQLEEDPLLETLDKVIPQIIFLLHRTKSSDVSHLLQDGSTGPDSLRTSDSY 330

Query: 355 EIIPLPGLDTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 361
           +I PLPGL+TIFEELLQEEGI DV I+RQGFEKRVVSQDLQLWLSN+
Sbjct: 331 DIEPLPGLETIFEELLQEEGISDVRISRQGFEKRVVSQDLQLWLSNA 375

[Close]
BLAST of Cp4.1LG03g12690 vs. TrEMBL
Match: A0A059B0Z8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02624 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.8e-105
Identity = 196/265 (73.96%), Postives = 224/265 (84.53%), Query Frame = 1 

Query: 106 PESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSC 165
           P++ R+AR SADWK AR Y +SG I+KGR+EG N GGLLVRFYSLVGFLPFP LSP++SC
Sbjct: 95  PDAERQARWSADWKAARAYNESGLIYKGRVEGFNGGGLLVRFYSLVGFLPFPQLSPSYSC 154

Query: 166 KEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVG 225
           KEP K+IQ++AKSLIGS++PVKVIQADE ++ LIFSEKEA WSK S Q+ VGD+++ARVG
Sbjct: 155 KEPAKNIQEVAKSLIGSVVPVKVIQADEDSRQLIFSEKEAVWSKVSGQINVGDIFQARVG 214

Query: 226 SVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV----------RSR 285
           SVEDYGAFVHL+F DGLYHLTGLVH+SEVSWDLVQDVRDILSE DEV          +SR
Sbjct: 215 SVEDYGAFVHLQFPDGLYHLTGLVHVSEVSWDLVQDVRDILSENDEVKVKVINIDREKSR 274

Query: 286 ITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTIFEELLQEEGIE 345
           ITLS+KQLEEDPLLETLDKVIPQD S   D+    S S+I PLPGL+ I +ELLQEEGIE
Sbjct: 275 ITLSMKQLEEDPLLETLDKVIPQDGSVNSDASSTNSSSKIDPLPGLEIIIQELLQEEGIE 334

Query: 346 DVHINRQGFEKRVVSQDLQLWLSNS 361
           DV INRQGFEKRVVSQDLQLWLSN+
Sbjct: 335 DVRINRQGFEKRVVSQDLQLWLSNA 359

[Close]
BLAST of Cp4.1LG03g12690 vs. TrEMBL
Match: A0A068URQ0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030954001 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.8e-105
Identity = 204/294 (69.39%), Postives = 238/294 (80.95%), Query Frame = 1 

Query: 77  KRPSNFAARVSLSGKPDPIA-GVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRI 136
           KR + FA +VS+S      A GV +    SPE VR+ RRSADWK AR Y + G IF+GR+
Sbjct: 115 KRAAFFAPKVSVSSDSAAKAVGVDQEQSLSPEDVRQDRRSADWKAARTYNERGLIFEGRV 174

Query: 137 EGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKN 196
           EG N+GGLL+RFYSLVGFLPFP L P+HSCKEP KSIQ++A++L GS+IPVKVIQADE +
Sbjct: 175 EGFNSGGLLIRFYSLVGFLPFPQLGPSHSCKEPNKSIQEVARALTGSVIPVKVIQADEVS 234

Query: 197 KNLIFSEKEAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVS 256
           + LIFSEKEA WSKFS Q+ VGDV++ARVGSVEDYGAF+HL F DG YHLTGLVH+SEVS
Sbjct: 235 RKLIFSEKEALWSKFSHQINVGDVFQARVGSVEDYGAFLHLGFPDGHYHLTGLVHVSEVS 294

Query: 257 WDLVQDVRDILSEGDEVR----------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPD 316
           WDLVQDVRD+LSEGD+VR          SRITLSIKQLEEDPLLETL+KV+PQD S+ PD
Sbjct: 295 WDLVQDVRDVLSEGDDVRVKIINIDRDKSRITLSIKQLEEDPLLETLEKVMPQDASSSPD 354

Query: 317 SFGPKSDSEIIPLPGLDTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSN 360
               ++  EI PLPGL+ IF+ELLQE+GI+DV INRQGFEKRVVSQDLQLWLSN
Sbjct: 355 Y--SENSYEIEPLPGLEIIFQELLQEDGIKDVKINRQGFEKRVVSQDLQLWLSN 406

[Close]
BLAST of Cp4.1LG03g12690 vs. TAIR10
Match: AT3G23700.1 (AT3G23700.1 Nucleic acid-binding proteins superfamily)

HSP 1 Score: 346.3 bits (887), Expect = 2.3e-95
Identity = 197/349 (56.45%), Postives = 236/349 (67.62%), Query Frame = 1 

Query: 35  MPIFA-ATTLGSLS--AHSF----------LALSASTDASNSLSTSFFLTHKSPSKRPSN 94
           M +F+ ATTLGS+S  +H F          L L  S+ +S+S   S     KS S   + 
Sbjct: 1   MAVFSGATTLGSVSFASHLFDQQSTFLSCPLRLLPSSSSSSSNRNSLVCIVKSFSSSATA 60

Query: 95  FAARVSLSGKPDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAG 154
              R S       +     S          A   +DWKTA+ Y  SG  F+G ++G N G
Sbjct: 61  DTDRNSDQSASSSVLSASNSLLRDTSDEASAAGPSDWKTAKAYCKSGDTFEGEVQGFNGG 120

Query: 155 GLLVRFYSLVGFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFS 214
           GLL+RF+SLVGFLP+P LSP+ SCKEP KSI +IAK+L+GS +PVKV+QADE+N+ LI S
Sbjct: 121 GLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILS 180

Query: 215 EKEAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQD 274
           EK A W K+S+ V VGDV+  RVGSVEDYGAF+HLRF DGLYHLTGLVH+SEVSWD VQD
Sbjct: 181 EKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQD 240

Query: 275 VRDILSEGDEVR----------SRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKS 334
           VRD+L +GDEVR          SRITLSIKQLE+DPLLETLDKVI +D S    S    +
Sbjct: 241 VRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSTGSPSLSSNN 300

Query: 335 DSEIIPLPGLDTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 361
              I PLPGL+TI EELL+E+GIE V INRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 GDTIEPLPGLETILEELLKEDGIEAVKINRQGFEKRVVSQDLQLWLSNT 349

[Close]
BLAST of Cp4.1LG03g12690 vs. TAIR10
Match: AT5G30510.1 (AT5G30510.1 ribosomal protein S1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-18
Identity = 61/203 (30.05%), Postives = 99/203 (48.77%), Query Frame = 1 

Query: 95  IAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFL 154
           I G  ES  S   S+R  +    W+  R+      I K ++ G+N GGL+     L GF+
Sbjct: 154 IIGENESDDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFV 213

Query: 155 PFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQV 214
           PF  +S   + +E           L+   IP+K ++ DE+   L+ S ++A  +    Q+
Sbjct: 214 PFSQISSKAAAEE-----------LLEKEIPLKFVEVDEEQTKLVLSNRKAV-ADSQAQL 273

Query: 215 GVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV-- 274
           G+G V    V S++ YGAF+ +        + GL+H+S++S D V D+  +L  GD +  
Sbjct: 274 GIGSVVLGVVQSLKPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKV 333

Query: 275 --------RSRITLSIKQLEEDP 288
                   R R++LS K+LE  P
Sbjct: 334 MILSHDRDRGRVSLSTKKLEPTP 338

[Close]
BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: gi|659108067|ref|XP_008454000.1| (PREDICTED: uncharacterized protein LOC103494553 isoform X2 [Cucumis melo])

HSP 1 Score: 512.3 bits (1318), Expect = 6.9e-142
Identity = 280/347 (80.69%), Postives = 300/347 (86.46%), Query Frame = 1 

Query: 27  FPSHSPPNMPIFAATTLGSLSAHSFLALSAST-DASN--SLSTSFFLTHKSPSKRPSNFA 86
           FP   P  MPIF AT + S+S HSFL+L AST DAS+  S S+S  L  KSPSKRPS F 
Sbjct: 37  FPLSIPIIMPIFLAT-IASVSTHSFLSLLASTSDASSTSSSSSSSILPLKSPSKRPSIFP 96

Query: 87  ARVSLSGKPDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGL 146
           +RVSLSGKPDPIAGVL+   +SPESVRRARRSADWK AREYLDSGFI++GRIEGSNAGGL
Sbjct: 97  SRVSLSGKPDPIAGVLD---TSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGL 156

Query: 147 LVRFYSLVGFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEK 206
           LVRFYSL+GFLPFP LSP+HSCKEP KSIQDIAKSL GSLI VKVIQADE+NK LIFSEK
Sbjct: 157 LVRFYSLMGFLPFPQLSPSHSCKEPNKSIQDIAKSLTGSLISVKVIQADERNKKLIFSEK 216

Query: 207 EAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVR 266
           EA WSKFS QVGVGDVYEA+VGS+EDYGAFVHLRFSDGLYHLTGLVH+SEVSWDLVQDVR
Sbjct: 217 EATWSKFSGQVGVGDVYEAKVGSLEDYGAFVHLRFSDGLYHLTGLVHVSEVSWDLVQDVR 276

Query: 267 DILSEGDEV----------RSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDS 326
           DILSEGDEV          +SRITLSI+QLEEDPLLETLDKVIPQD SAEPDSFGPKSDS
Sbjct: 277 DILSEGDEVTVKVINVDRDKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKSDS 336

Query: 327 EIIPLPGLDTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 361
           EIIPLPGL TI EEL QEEGI DV +NRQGFEKRVVSQDLQLWLSN+
Sbjct: 337 EIIPLPGLGTIIEELQQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNA 379

[Close]
BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: gi|449468800|ref|XP_004152109.1| (PREDICTED: uncharacterized protein LOC101213559 isoform X2 [Cucumis sativus])

HSP 1 Score: 510.4 bits (1313), Expect = 2.6e-141
Identity = 278/339 (82.01%), Postives = 298/339 (87.91%), Query Frame = 1 

Query: 35  MPIFAATTLGSLSAHSFLALSAST-DASN--SLSTSFFLTHKSPSKRPSNFAARVSLSGK 94
           MPIF AT + S+SAHSFL+L AST DAS+  S S+SF L  KSPSKR S F +RVSLSGK
Sbjct: 1   MPIFVAT-IASVSAHSFLSLLASTSDASSTSSSSSSFILPLKSPSKRSSIFPSRVSLSGK 60

Query: 95  PDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 154
           PDPIAGVL++SP   ESVRRARRSADWK AREYLDSGFI++GRIEGSNAGGLLVRFYSLV
Sbjct: 61  PDPIAGVLDTSP---ESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLV 120

Query: 155 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 214
           GFLPFP LSP+HSCKEPYKSIQDIAKSLIGSLI VKVIQADEKN+ LIFSEKEAA SKFS
Sbjct: 121 GFLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFS 180

Query: 215 EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 274
            QV VGDVYE +VGSVEDYGAFVHLR SDGLYHLTGLVH+SEVSWDLVQDVRDILSEGDE
Sbjct: 181 GQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDE 240

Query: 275 V----------RSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 334
           V          +SRITLSI+QLEEDPLLETLDKVIPQ+ SAEPDSFGPK DSEIIPLPGL
Sbjct: 241 VTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQESSAEPDSFGPKGDSEIIPLPGL 300

Query: 335 DTIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNS 361
           +TI EELLQEEGI DV +NRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 ETIIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNA 335

[Close]
BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: gi|659108065|ref|XP_008453999.1| (PREDICTED: uncharacterized protein LOC103494553 isoform X1 [Cucumis melo])

HSP 1 Score: 506.5 bits (1303), Expect = 3.8e-140
Identity = 280/351 (79.77%), Postives = 300/351 (85.47%), Query Frame = 1 

Query: 27  FPSHSPPNMPIFAATTLGSLSAHSFLALSAST-DASN--SLSTSFFLTHKSPSKRPSNFA 86
           FP   P  MPIF AT + S+S HSFL+L AST DAS+  S S+S  L  KSPSKRPS F 
Sbjct: 37  FPLSIPIIMPIFLAT-IASVSTHSFLSLLASTSDASSTSSSSSSSILPLKSPSKRPSIFP 96

Query: 87  ARVSLSGKPDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGL 146
           +RVSLSGKPDPIAGVL+   +SPESVRRARRSADWK AREYLDSGFI++GRIEGSNAGGL
Sbjct: 97  SRVSLSGKPDPIAGVLD---TSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGL 156

Query: 147 LVRFYSLVGFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEK 206
           LVRFYSL+GFLPFP LSP+HSCKEP KSIQDIAKSL GSLI VKVIQADE+NK LIFSEK
Sbjct: 157 LVRFYSLMGFLPFPQLSPSHSCKEPNKSIQDIAKSLTGSLISVKVIQADERNKKLIFSEK 216

Query: 207 EAAWSKFSEQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVR 266
           EA WSKFS QVGVGDVYEA+VGS+EDYGAFVHLRFSDGLYHLTGLVH+SEVSWDLVQDVR
Sbjct: 217 EATWSKFSGQVGVGDVYEAKVGSLEDYGAFVHLRFSDGLYHLTGLVHVSEVSWDLVQDVR 276

Query: 267 DILSEGDEV----------RSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDS 326
           DILSEGDEV          +SRITLSI+QLEEDPLLETLDKVIPQD SAEPDSFGPKSDS
Sbjct: 277 DILSEGDEVTVKVINVDRDKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKSDS 336

Query: 327 EIIPLPGLDTIFEELLQEEG----IEDVHINRQGFEKRVVSQDLQLWLSNS 361
           EIIPLPGL TI EEL QEEG    I DV +NRQGFEKRVVSQDLQLWLSN+
Sbjct: 337 EIIPLPGLGTIIEELQQEEGLNISIVDVRVNRQGFEKRVVSQDLQLWLSNA 383

[Close]
BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: gi|778689981|ref|XP_011653045.1| (PREDICTED: uncharacterized protein LOC101213559 isoform X1 [Cucumis sativus])

HSP 1 Score: 504.6 bits (1298), Expect = 1.4e-139
Identity = 278/343 (81.05%), Postives = 298/343 (86.88%), Query Frame = 1 

Query: 35  MPIFAATTLGSLSAHSFLALSAST-DASN--SLSTSFFLTHKSPSKRPSNFAARVSLSGK 94
           MPIF AT + S+SAHSFL+L AST DAS+  S S+SF L  KSPSKR S F +RVSLSGK
Sbjct: 1   MPIFVAT-IASVSAHSFLSLLASTSDASSTSSSSSSFILPLKSPSKRSSIFPSRVSLSGK 60

Query: 95  PDPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLV 154
           PDPIAGVL++SP   ESVRRARRSADWK AREYLDSGFI++GRIEGSNAGGLLVRFYSLV
Sbjct: 61  PDPIAGVLDTSP---ESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLV 120

Query: 155 GFLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFS 214
           GFLPFP LSP+HSCKEPYKSIQDIAKSLIGSLI VKVIQADEKN+ LIFSEKEAA SKFS
Sbjct: 121 GFLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFS 180

Query: 215 EQVGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDE 274
            QV VGDVYE +VGSVEDYGAFVHLR SDGLYHLTGLVH+SEVSWDLVQDVRDILSEGDE
Sbjct: 181 GQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDE 240

Query: 275 V----------RSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGL 334
           V          +SRITLSI+QLEEDPLLETLDKVIPQ+ SAEPDSFGPK DSEIIPLPGL
Sbjct: 241 VTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQESSAEPDSFGPKGDSEIIPLPGL 300

Query: 335 DTIFEELLQEEG----IEDVHINRQGFEKRVVSQDLQLWLSNS 361
           +TI EELLQEEG    I DV +NRQGFEKRVVSQDLQLWLSN+
Sbjct: 301 ETIIEELLQEEGLNISIVDVRVNRQGFEKRVVSQDLQLWLSNA 339

[Close]
BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match: gi|225433644|ref|XP_002264430.1| (PREDICTED: uncharacterized protein LOC100244532 [Vitis vinifera])

HSP 1 Score: 416.0 bits (1068), Expect = 6.7e-113
Identity = 224/319 (70.22%), Postives = 257/319 (80.56%), Query Frame = 1 

Query: 55  SASTDASNSLSTSFFLTHKSPSKR-PSNFA-ARVSLSGKPDPIAGVLESSPSSP-ESVRR 114
           SAS   + S  +SF+   +SP +R P + A ARVS  G     AGV+E SP  P +++R+
Sbjct: 31  SASLLINPSKISSFY--RRSPLRRSPFHIATARVSTEGSEQATAGVVEGSPPPPFDAIRQ 90

Query: 115 ARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVGFLPFPLLSPAHSCKEPYKS 174
           ARRSADWK AR +L+SGFI++GRIEG N GGLLVRFYSLVGFLPFP LSP+HSCKEP+K+
Sbjct: 91  ARRSADWKAARAHLESGFIYEGRIEGFNGGGLLVRFYSLVGFLPFPQLSPSHSCKEPHKT 150

Query: 175 IQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSEQVGVGDVYEARVGSVEDYG 234
           IQ+IAK LIGSLI VKVI ADE+ + LIFSEKEAAW KFS+Q+ +GD++EA VGSVEDYG
Sbjct: 151 IQEIAKGLIGSLISVKVILADEEKRKLIFSEKEAAWLKFSKQINIGDIFEAMVGSVEDYG 210

Query: 235 AFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEVR----------SRITLSIK 294
           AFVHLRF DGLYHLTGLVH+SEVSWDLVQDVRD+L+EGDEVR          SRITLSIK
Sbjct: 211 AFVHLRFPDGLYHLTGLVHVSEVSWDLVQDVRDVLNEGDEVRVKIVKVDRVKSRITLSIK 270

Query: 295 QLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLDTIFEELLQEEGIEDVHINR 354
           QLEEDPLLETLDKVIPQD S  PDS       +I PLPGL+TIFEELLQEEGI DV I+R
Sbjct: 271 QLEEDPLLETLDKVIPQDGSTGPDSLRTSDSYDIEPLPGLETIFEELLQEEGISDVRISR 330

Query: 355 QGFEKRVVSQDLQLWLSNS 361
           QGFEKRVVSQDLQLWLSN+
Sbjct: 331 QGFEKRVVSQDLQLWLSNA 347

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g12690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR1_SPIOL3.7e-1830.0530S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1[more]
RPS1_ARATH5.3e-1730.0530S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=... [more]
RS1_NEIMB1.0e-1533.3330S ribosomal protein S1 OS=Neisseria meningitidis serogroup B (strain MC58) GN=... [more]
RS1_SYNP62.2e-1529.4730S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... [more]
RS1A_SYNY33.2e-1428.9530S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
BLAST of Cp4.1LG03g12690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTX2_CUCSA1.8e-14182.01Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012510 PE=4 SV=1[more]
D7U9K6_VITVI4.7e-11370.22Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00830 PE=4 SV=... [more]
A5BZI0_VITVI3.0e-10764.55Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006784 PE=4 SV=1[more]
A0A059B0Z8_EUCGR2.8e-10573.96Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02624 PE=4 SV=1[more]
A0A068URQ0_COFCA2.8e-10569.39Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030954001 PE=4 SV=1[more]
BLAST of Cp4.1LG03g12690 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23700.12.3e-9556.45 Nucleic acid-binding proteins superfamily[more]
AT5G30510.13.0e-1830.05 ribosomal protein S1[more]
BLAST of Cp4.1LG03g12690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108067|ref|XP_008454000.1|6.9e-14280.69PREDICTED: uncharacterized protein LOC103494553 isoform X2 [Cucumis melo][more]
gi|449468800|ref|XP_004152109.1|2.6e-14182.01PREDICTED: uncharacterized protein LOC101213559 isoform X2 [Cucumis sativus][more]
gi|659108065|ref|XP_008453999.1|3.8e-14079.77PREDICTED: uncharacterized protein LOC103494553 isoform X1 [Cucumis melo][more]
gi|778689981|ref|XP_011653045.1|1.4e-13981.05PREDICTED: uncharacterized protein LOC101213559 isoform X1 [Cucumis sativus][more]
gi|225433644|ref|XP_002264430.1|6.7e-11370.22PREDICTED: uncharacterized protein LOC100244532 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR012340NA-bd_OB-fold
IPR003029S1_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0008150 biological_process
biological_process GO:0034337 RNA folding
biological_process GO:0009409 response to cold
biological_process GO:0009737 response to abscisic acid
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000481 maturation of 5S rRNA
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0042742 defense response to bacterium
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003729 mRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g12690.1Cp4.1LG03g12690.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003029S1 domainPFAMPF00575S1coord: 215..277
score: 3.9
IPR003029S1 domainPROFILEPS50126S1coord: 217..276
score: 13.744coord: 128..203
score: 12
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 118..204
score: 2.3E-9coord: 206..277
score: 1.2
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 126..203
score: 1.17E-7coord: 216..294
score: 5.86
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 126..203
score: 5.4E-4coord: 215..281
score: 5.
NoneNo IPR availablePANTHERPTHR23270PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5coord: 65..359
score: 2.8E
NoneNo IPR availablePANTHERPTHR23270:SF9SUBFAMILY NOT NAMEDcoord: 65..359
score: 2.8E