Cp4.1LG03g09250 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g09250
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaC05g47650D protein
Location	Cp4.1LG03 : 6051902 .. 6052183 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTGAACAGTCCTGTCGTTGTTTGGGTCGCCAATCTTTCTGCCGATCTCTGTCAATACGTCGCCTGTAATCCCGAGCGCTTGAGCAGCGACCATGTTCTTTACCTCATCTTCTGTTTCCCTTTCCACCATATCCGACGTATCTCCCTTTCCCTCCTTTCCTCCCTCTGCCTTCCCTCTCTCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCGATTCCGATTATTCCAATACCGACGACCTTGATTCCTACGATTACAATTCTCACTCCGATTGA

mRNA sequence

ATGGTGTTGAACAGTCCTGTCGTTGTTTGGGTCGCCAATCTTTCTGCCGATCTCTGTCAATACGTCGCCTGTAATCCCGAGCGCTTGAGCAGCGACCATGTTCTTTACCTCATCTTCTGTTTCCCTTTCCACCATATCCGACGTATCTCCCTTTCCCTCCTTTCCTCCCTCTGCCTTCCCTCTCTCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCGATTCCGATTATTCCAATACCGACGACCTTGATTCCTACGATTACAATTCTCACTCCGATTGA

Coding sequence (CDS)

ATGGTGTTGAACAGTCCTGTCGTTGTTTGGGTCGCCAATCTTTCTGCCGATCTCTGTCAATACGTCGCCTGTAATCCCGAGCGCTTGAGCAGCGACCATGTTCTTTACCTCATCTTCTGTTTCCCTTTCCACCATATCCGACGTATCTCCCTTTCCCTCCTTTCCTCCCTCTGCCTTCCCTCTCTCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCGATTCCGATTATTCCAATACCGACGACCTTGATTCCTACGATTACAATTCTCACTCCGATTGA

Protein sequence

MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCLPSLSSSSSSSSSSSDSDYSNTDDLDSYDYNSHSD

Homology

[Close]

BLAST of Cp4.1LG03g09250 vs. TrEMBL
Match: A0A0A0LCL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843740 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-31
Identity = 78/93 (83.87%), Postives = 85/93 (91.40%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCLP 60
          MVLNSP+V+WVAN+SADLCQY+ACNPER SS HVLYLIFCFPF H RRISLS+ SSLCLP
Sbjct: 1  MVLNSPLVLWVANISADLCQYIACNPERFSSHHVLYLIFCFPFRHFRRISLSIFSSLCLP 60

Query: 61 SLSSSSSSSSSSSDSDYSNTDDLDSYDYNSHSD 94
          SL SSSSSSSS S+SD S+TDDLDSYDYNSHSD
Sbjct: 61 SLLSSSSSSSSDSNSD-SDTDDLDSYDYNSHSD 92

[Close]

BLAST of Cp4.1LG03g09250 vs. TrEMBL
Match: M5VSK3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013984mg PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCLP 60
          MVLNS VVV VAN+SA++CQY+ACNPERLSS  VL+L+FCFPFH +RR    L++ +CLP
Sbjct: 1  MVLNSNVVVRVANISANICQYIACNPERLSSHQVLHLLFCFPFHQLRR---RLVAFICLP 60

Query: 61 SLSSSSSSSSSSSDSD--YSNTDDLDSYDYNSHSD 94
           LSSSSSS +   D D  + ++DDL +Y  NSHSD
Sbjct: 61 YLSSSSSSEADDDDEDSSHDSSDDLSAYASNSHSD 92

[Close]

BLAST of Cp4.1LG03g09250 vs. TrEMBL
Match: A0A022RHX9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017913mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-15
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCL- 60
          MV NSP+VV VA +SA+ CQY+ACNPERLSSD VL+L+FCFPF H+RR++L L +  C  
Sbjct: 1  MVFNSPLVVGVAKVSANACQYIACNPERLSSDQVLHLLFCFPFQHLRRLALCLWTFFCFS 60

Query: 61 ----PSLSSSSSSSSSSSDSDYSNTDDLDSYDYNSHSD 94
              P+  +SSSSSSSSS  D+    D+  +D + HSD
Sbjct: 61 PPNNPNYFTSSSSSSSSSSFDF----DVYDFDQDLHSD 94

[Close]

BLAST of Cp4.1LG03g09250 vs. TrEMBL
Match: M1AFE5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008382 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 50/92 (54.35%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCLP 60
          MV +SP++V VAN+SADLCQY+ACNPERLSSD VLYL+FCFP    RR +L L +  C P
Sbjct: 1  MVFSSPIIVGVANVSADLCQYIACNPERLSSDEVLYLLFCFPCQQFRRFALCLWTFFCFP 60

Query: 61 SLSSSSSSSSSSSDSDYSNTDDLDSYDYNSHS 93
            +   S  S SS S  S+  DLD  D + H+
Sbjct: 61 LPNPYLSFPSFSSSSSLSSDSDLDLEDSHPHA 92

[Close]

BLAST of Cp4.1LG03g09250 vs. TrEMBL
Match: K4D299_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-13
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCLP 60
          MV +SP++V VAN+SADLCQY+ACNPERLSSD VLYL+FCFP    RR +L L +  C P
Sbjct: 1  MVFSSPIIVGVANVSADLCQYIACNPERLSSDEVLYLLFCFPCQQFRRFALCLWTFFCFP 60

Query: 61 SLSS-SSSSSSSSSDSDYSNTDDLDSYDYNSHS 93
            +   S  S SSS S  S+  DLD  D +SH+
Sbjct: 61 LPNPYLSFPSFSSSSSSLSSDSDLDLEDSHSHA 93

[Close]

BLAST of Cp4.1LG03g09250 vs. NCBI nr
Match: gi|700204622|gb|KGN59755.1| (hypothetical protein Csa_3G843740 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 6.3e-31
Identity = 78/93 (83.87%), Postives = 85/93 (91.40%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCLP 60
          MVLNSP+V+WVAN+SADLCQY+ACNPER SS HVLYLIFCFPF H RRISLS+ SSLCLP
Sbjct: 1  MVLNSPLVLWVANISADLCQYIACNPERFSSHHVLYLIFCFPFRHFRRISLSIFSSLCLP 60

Query: 61 SLSSSSSSSSSSSDSDYSNTDDLDSYDYNSHSD 94
          SL SSSSSSSS S+SD S+TDDLDSYDYNSHSD
Sbjct: 61 SLLSSSSSSSSDSNSD-SDTDDLDSYDYNSHSD 92

[Close]

BLAST of Cp4.1LG03g09250 vs. NCBI nr
Match: gi|595808728|ref|XP_007202802.1| (hypothetical protein PRUPE_ppa013984mg [Prunus persica])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-17
Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCLP 60
          MVLNS VVV VAN+SA++CQY+ACNPERLSS  VL+L+FCFPFH +RR    L++ +CLP
Sbjct: 1  MVLNSNVVVRVANISANICQYIACNPERLSSHQVLHLLFCFPFHQLRR---RLVAFICLP 60

Query: 61 SLSSSSSSSSSSSDSD--YSNTDDLDSYDYNSHSD 94
           LSSSSSS +   D D  + ++DDL +Y  NSHSD
Sbjct: 61 YLSSSSSSEADDDDEDSSHDSSDDLSAYASNSHSD 92

[Close]

BLAST of Cp4.1LG03g09250 vs. NCBI nr
Match: gi|604336146|gb|EYU39992.1| (hypothetical protein MIMGU_mgv1a017913mg [Erythranthe guttata])

HSP 1 Score: 88.2 bits (217), Expect = 8.3e-15
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCL- 60
          MV NSP+VV VA +SA+ CQY+ACNPERLSSD VL+L+FCFPF H+RR++L L +  C  
Sbjct: 1  MVFNSPLVVGVAKVSANACQYIACNPERLSSDQVLHLLFCFPFQHLRRLALCLWTFFCFS 60

Query: 61 ----PSLSSSSSSSSSSSDSDYSNTDDLDSYDYNSHSD 94
              P+  +SSSSSSSSS  D+    D+  +D + HSD
Sbjct: 61 PPNNPNYFTSSSSSSSSSSFDF----DVYDFDQDLHSD 94

[Close]

BLAST of Cp4.1LG03g09250 vs. NCBI nr
Match: gi|698503432|ref|XP_009797310.1| (PREDICTED: uncharacterized protein LOC104243757 [Nicotiana sylvestris])

HSP 1 Score: 84.7 bits (208), Expect = 9.1e-14
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCLP 60
          MV NSPVVV VANLSAD CQ++ACNPERLSSD VLYL+FC+PF  + R +L L +  C P
Sbjct: 1  MVFNSPVVVSVANLSADFCQFIACNPERLSSDQVLYLLFCYPFQQLHRFTLCLWTFFCFP 60

Query: 61 SLSSSSSSSSSS 73
            +SS S  SS+
Sbjct: 61 LPNSSLSFPSSA 72

[Close]

BLAST of Cp4.1LG03g09250 vs. NCBI nr
Match: gi|902210780|gb|KNA16530.1| (hypothetical protein SOVF_088180 [Spinacia oleracea])

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-13
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCLP 60
          MVLNS VVV VAN SA +CQY+ACNPE LSSD VL+L+FCFPF  IRR+SL L +  C P
Sbjct: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60

Query: 61 SLSSS---SSSSSSSSDSDYSNTDDLDSYDYNS 91
            S      S SSSSSD   S+ D   +YD++S
Sbjct: 61 YSSDPLFYPSHSSSSSDDSLSSAD--PTYDFHS 91

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g09250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g09250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCL0_CUCSA	4.4e-31	83.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843740 PE=4 SV=1	[more]
M5VSK3_PRUPE	1.6e-17	61.05	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013984mg PE=4 SV=1	[more]
A0A022RHX9_ERYGU	5.8e-15	55.10	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017913mg PE=4 SV=1	[more]
M1AFE5_SOLTU	1.4e-13	54.35	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008382 PE=4 SV=1	[more]
K4D299_SOLLC	1.9e-13	55.91	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cp4.1LG03g09250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g09250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204622\|gb\|KGN59755.1\|	6.3e-31	83.87	hypothetical protein Csa_3G843740 [Cucumis sativus]	[more]
gi\|595808728\|ref\|XP_007202802.1\|	2.3e-17	61.05	hypothetical protein PRUPE_ppa013984mg [Prunus persica]	[more]
gi\|604336146\|gb\|EYU39992.1\|	8.3e-15	55.10	hypothetical protein MIMGU_mgv1a017913mg [Erythranthe guttata]	[more]
gi\|698503432\|ref\|XP_009797310.1\|	9.1e-14	62.50	PREDICTED: uncharacterized protein LOC104243757 [Nicotiana sylvestris]	[more]
gi\|902210780\|gb\|KNA16530.1\|	4.5e-13	58.06	hypothetical protein SOVF_088180 [Spinacia oleracea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g09250.1	Cp4.1LG03g09250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35104	FAMILY NOT NAMED	coord: 2..85 score: 1.1
None	No IPR available	PANTHER	PTHR35104:SF2	SUBFAMILY NOT NAMED	coord: 2..85 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g09250	CmaCh14G010910	Cucurbita maxima (Rimu)	cmacpeB284
Cp4.1LG03g09250	CmoCh14G011450	Cucurbita moschata (Rifu)	cmocpeB246
Cp4.1LG03g09250	Cla017168	Watermelon (97103) v1	cpewmB598
Cp4.1LG03g09250	Csa3G843740	Cucumber (Chinese Long) v2	cpecuB606
Cp4.1LG03g09250	MELO3C026884	Melon (DHL92) v3.5.1	cpemeB576
Cp4.1LG03g09250	ClCG10G013400	Watermelon (Charleston Gray)	cpewcgB547
Cp4.1LG03g09250	CSPI03G40750	Wild cucumber (PI 183967)	cpecpiB607
Cp4.1LG03g09250	MELO3C026884.2	Melon (DHL92) v3.6.1	cpemedB683

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g09250	Cucumber (Gy14) v1	cgycpeB0489
Cp4.1LG03g09250	Cucumber (Gy14) v1	cgycpeB0890
Cp4.1LG03g09250	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g09250	Cucurbita maxima (Rimu)	cmacpeB835
Cp4.1LG03g09250	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g09250	Cucurbita moschata (Rifu)	cmocpeB786
Cp4.1LG03g09250	Wild cucumber (PI 183967)	cpecpiB601
Cp4.1LG03g09250	Cucumber (Chinese Long) v2	cpecuB599
Cp4.1LG03g09250	Bottle gourd (USVL1VR-Ls)	cpelsiB500
Cp4.1LG03g09250	Bottle gourd (USVL1VR-Ls)	cpelsiB504
Cp4.1LG03g09250	Watermelon (Charleston Gray)	cpewcgB544
Cp4.1LG03g09250	Watermelon (97103) v1	cpewmB595
Cp4.1LG03g09250	Melon (DHL92) v3.5.1	cpemeB566
Cp4.1LG03g09250	Cucumber (Gy14) v2	cgybcpeB396
Cp4.1LG03g09250	Cucumber (Gy14) v2	cgybcpeB403
Cp4.1LG03g09250	Melon (DHL92) v3.6.1	cpemedB673
Cp4.1LG03g09250	Silver-seed gourd	carcpeB1147
Cp4.1LG03g09250	Cucumber (Chinese Long) v3	cpecucB0748
Cp4.1LG03g09250	Cucumber (Chinese Long) v3	cpecucB0756
Cp4.1LG03g09250	Wax gourd	cpewgoB0742
Cp4.1LG03g09250	Wax gourd	cpewgoB0755