CmoCh14G011450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G011450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC05g47650D protein
Location	Cmo_Chr14 : 8562604 .. 8562879 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTGAACAGTCCTGTCGTTGTTTGGGTCGCCAATCTTTCTGCCGATCTCTGTCAATACGTCGCCTGTAATCCCGAGCGCTTGAGCAGCGACCATGTTCTTTACCTCATCTTCTGTTTCCCTTTCCACCATATCCGACGTATCTCCCTTTCCCTCCTTTCCTCCCTCTGCTTTCCCTCTCTCTCCTCCTCTTCCTCCTCTTCCTCCTCCGATTCCGATTATTCCAATACCGACGACCTTGATTCCTACGATTACAATTCTCACTCCGATTGA

mRNA sequence

ATGGTGTTGAACAGTCCTGTCGTTGTTTGGGTCGCCAATCTTTCTGCCGATCTCTGTCAATACGTCGCCTGTAATCCCGAGCGCTTGAGCAGCGACCATGTTCTTTACCTCATCTTCTGTTTCCCTTTCCACCATATCCGACGTATCTCCCTTTCCCTCCTTTCCTCCCTCTGCTTTCCCTCTCTCTCCTCCTCTTCCTCCTCTTCCTCCTCCGATTCCGATTATTCCAATACCGACGACCTTGATTCCTACGATTACAATTCTCACTCCGATTGA

Coding sequence (CDS)

ATGGTGTTGAACAGTCCTGTCGTTGTTTGGGTCGCCAATCTTTCTGCCGATCTCTGTCAATACGTCGCCTGTAATCCCGAGCGCTTGAGCAGCGACCATGTTCTTTACCTCATCTTCTGTTTCCCTTTCCACCATATCCGACGTATCTCCCTTTCCCTCCTTTCCTCCCTCTGCTTTCCCTCTCTCTCCTCCTCTTCCTCCTCTTCCTCCTCCGATTCCGATTATTCCAATACCGACGACCTTGATTCCTACGATTACAATTCTCACTCCGATTGA

Homology

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BLAST of CmoCh14G011450 vs. TrEMBL
Match: A0A0A0LCL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843740 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.6e-31
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCFP 60
          MVLNSP+V+WVAN+SADLCQY+ACNPER SS HVLYLIFCFPF H RRISLS+ SSLC P
Sbjct: 1  MVLNSPLVLWVANISADLCQYIACNPERFSSHHVLYLIFCFPFRHFRRISLSIFSSLCLP 60

Query: 61 SLSSSSSSSSSDSDY-SNTDDLDSYDYNSHSD 92
          SL SSSSSSSSDS+  S+TDDLDSYDYNSHSD
Sbjct: 61 SLLSSSSSSSSDSNSDSDTDDLDSYDYNSHSD 92

[Close]

BLAST of CmoCh14G011450 vs. TrEMBL
Match: M5VSK3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013984mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCFP 60
          MVLNS VVV VAN+SA++CQY+ACNPERLSS  VL+L+FCFPFH +RR    L++ +C P
Sbjct: 1  MVLNSNVVVRVANISANICQYIACNPERLSSHQVLHLLFCFPFHQLRR---RLVAFICLP 60

Query: 61 SLSSSSSSSSSDSD----YSNTDDLDSYDYNSHSD 92
           LSSSSSS + D D    + ++DDL +Y  NSHSD
Sbjct: 61 YLSSSSSSEADDDDEDSSHDSSDDLSAYASNSHSD 92

[Close]

BLAST of CmoCh14G011450 vs. TrEMBL
Match: K4D299_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-16
Identity = 57/99 (57.58%), Postives = 67/99 (67.68%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLC-- 60
          MV +SP++V VAN+SADLCQY+ACNPERLSSD VLYL+FCFP    RR +L L +  C  
Sbjct: 1  MVFSSPIIVGVANVSADLCQYIACNPERLSSDEVLYLLFCFPCQQFRRFALCLWTFFCFP 60

Query: 61 -------FPSLSSSSSSSSSDSDYSNTDDLDSYDYNSHS 91
                 FPS SSSSSS SSDS      DLD  D +SH+
Sbjct: 61 LPNPYLSFPSFSSSSSSLSSDS------DLDLEDSHSHA 93

[Close]

BLAST of CmoCh14G011450 vs. TrEMBL
Match: A0A022RHX9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017913mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.7e-16
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCF- 60
          MV NSP+VV VA +SA+ CQY+ACNPERLSSD VL+L+FCFPF H+RR++L L +  CF 
Sbjct: 1  MVFNSPLVVGVAKVSANACQYIACNPERLSSDQVLHLLFCFPFQHLRRLALCLWTFFCFS 60

Query: 61 ----PSLSSSSSSSSSDSDYSNTDDLDSYDYNS--HSD 92
              P+  +SSSSSSS S +    D D YD++   HSD
Sbjct: 61 PPNNPNYFTSSSSSSSSSSF----DFDVYDFDQDLHSD 94

[Close]

BLAST of CmoCh14G011450 vs. TrEMBL
Match: A0A0K9RAL7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088180 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.6e-15
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCFP 60
          MVLNS VVV VAN SA +CQY+ACNPE LSSD VL+L+FCFPF  IRR+SL L +  CFP
Sbjct: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60

Query: 61 SLSS-----SSSSSSSDSDYSNTDDLDSYDYNS 89
            S      S SSSSSD   S+ D   +YD++S
Sbjct: 61 YSSDPLFYPSHSSSSSDDSLSSAD--PTYDFHS 91

[Close]

BLAST of CmoCh14G011450 vs. NCBI nr
Match: gi|700204622|gb|KGN59755.1| (hypothetical protein Csa_3G843740 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCFP 60
          MVLNSP+V+WVAN+SADLCQY+ACNPER SS HVLYLIFCFPF H RRISLS+ SSLC P
Sbjct: 1  MVLNSPLVLWVANISADLCQYIACNPERFSSHHVLYLIFCFPFRHFRRISLSIFSSLCLP 60

Query: 61 SLSSSSSSSSSDSDY-SNTDDLDSYDYNSHSD 92
          SL SSSSSSSSDS+  S+TDDLDSYDYNSHSD
Sbjct: 61 SLLSSSSSSSSDSNSDSDTDDLDSYDYNSHSD 92

[Close]

BLAST of CmoCh14G011450 vs. NCBI nr
Match: gi|595808728|ref|XP_007202802.1| (hypothetical protein PRUPE_ppa013984mg [Prunus persica])

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCFP 60
          MVLNS VVV VAN+SA++CQY+ACNPERLSS  VL+L+FCFPFH +RR    L++ +C P
Sbjct: 1  MVLNSNVVVRVANISANICQYIACNPERLSSHQVLHLLFCFPFHQLRR---RLVAFICLP 60

Query: 61 SLSSSSSSSSSDSD----YSNTDDLDSYDYNSHSD 92
           LSSSSSS + D D    + ++DDL +Y  NSHSD
Sbjct: 61 YLSSSSSSEADDDDEDSSHDSSDDLSAYASNSHSD 92

[Close]

BLAST of CmoCh14G011450 vs. NCBI nr
Match: gi|604336146|gb|EYU39992.1| (hypothetical protein MIMGU_mgv1a017913mg [Erythranthe guttata])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCF- 60
          MV NSP+VV VA +SA+ CQY+ACNPERLSSD VL+L+FCFPF H+RR++L L +  CF 
Sbjct: 1  MVFNSPLVVGVAKVSANACQYIACNPERLSSDQVLHLLFCFPFQHLRRLALCLWTFFCFS 60

Query: 61 ----PSLSSSSSSSSSDSDYSNTDDLDSYDYNS--HSD 92
              P+  +SSSSSSS S +    D D YD++   HSD
Sbjct: 61 PPNNPNYFTSSSSSSSSSSF----DFDVYDFDQDLHSD 94

[Close]

BLAST of CmoCh14G011450 vs. NCBI nr
Match: gi|698503432|ref|XP_009797310.1| (PREDICTED: uncharacterized protein LOC104243757 [Nicotiana sylvestris])

HSP 1 Score: 88.2 bits (217), Expect = 8.1e-15
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCFP 60
          MV NSPVVV VANLSAD CQ++ACNPERLSSD VLYL+FC+PF  + R +L L +  CFP
Sbjct: 1  MVFNSPVVVSVANLSADFCQFIACNPERLSSDQVLYLLFCYPFQQLHRFTLCLWTFFCFP 60

Query: 61 SLSSSSSSSSS 72
            +SS S  SS
Sbjct: 61 LPNSSLSFPSS 71

[Close]

BLAST of CmoCh14G011450 vs. NCBI nr
Match: gi|902210780|gb|KNA16530.1| (hypothetical protein SOVF_088180 [Spinacia oleracea])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 1


Query: 1  MVLNSPVVVWVANLSADLCQYVACNPERLSSDHVLYLIFCFPFHHIRRISLSLLSSLCFP 60
          MVLNS VVV VAN SA +CQY+ACNPE LSSD VL+L+FCFPF  IRR+SL L +  CFP
Sbjct: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60

Query: 61 SLSS-----SSSSSSSDSDYSNTDDLDSYDYNS 89
            S      S SSSSSD   S+ D   +YD++S
Sbjct: 61 YSSDPLFYPSHSSSSSDDSLSSAD--PTYDFHS 91

The following BLAST results are available for this feature:

BLAST of CmoCh14G011450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G011450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCL0_CUCSA	9.6e-31	82.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843740 PE=4 SV=1	[more]
M5VSK3_PRUPE	1.2e-17	60.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013984mg PE=4 SV=1	[more]
K4D299_SOLLC	5.1e-16	57.58	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A022RHX9_ERYGU	8.7e-16	56.12	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017913mg PE=4 SV=1	[more]
A0A0K9RAL7_SPIOL	9.6e-15	59.14	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088180 PE=4 SV=1	[more]

BLAST of CmoCh14G011450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G011450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204622\|gb\|KGN59755.1\|	1.4e-30	82.61	hypothetical protein Csa_3G843740 [Cucumis sativus]	[more]
gi\|595808728\|ref\|XP_007202802.1\|	1.7e-17	60.00	hypothetical protein PRUPE_ppa013984mg [Prunus persica]	[more]
gi\|604336146\|gb\|EYU39992.1\|	1.2e-15	56.12	hypothetical protein MIMGU_mgv1a017913mg [Erythranthe guttata]	[more]
gi\|698503432\|ref\|XP_009797310.1\|	8.1e-15	64.79	PREDICTED: uncharacterized protein LOC104243757 [Nicotiana sylvestris]	[more]
gi\|902210780\|gb\|KNA16530.1\|	1.4e-14	59.14	hypothetical protein SOVF_088180 [Spinacia oleracea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G011450.1	CmoCh14G011450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35104	FAMILY NOT NAMED	coord: 2..83 score: 3.1
None	No IPR available	PANTHER	PTHR35104:SF2	SUBFAMILY NOT NAMED	coord: 2..83 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G011450	CmaCh14G010910	Cucurbita maxima (Rimu)	cmacmoB246
CmoCh14G011450	Cla017168	Watermelon (97103) v1	cmowmB215
CmoCh14G011450	Csa3G843740	Cucumber (Chinese Long) v2	cmocuB233
CmoCh14G011450	MELO3C026884	Melon (DHL92) v3.5.1	cmomeB219
CmoCh14G011450	ClCG10G013400	Watermelon (Charleston Gray)	cmowcgB208
CmoCh14G011450	CSPI03G40750	Wild cucumber (PI 183967)	cmocpiB236
CmoCh14G011450	Cp4.1LG03g09250	Cucurbita pepo (Zucchini)	cmocpeB246
CmoCh14G011450	MELO3C026884.2	Melon (DHL92) v3.6.1	cmomedB248
CmoCh14G011450	Cla97C10G196190	Watermelon (97103) v2	cmowmbB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G011450	Cucurbita moschata (Rifu)	cmocmoB204
CmoCh14G011450	Cucumber (Gy14) v1	cgycmoB0928
CmoCh14G011450	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G011450	Cucurbita maxima (Rimu)	cmacmoB463
CmoCh14G011450	Cucurbita pepo (Zucchini)	cmocpeB242
CmoCh14G011450	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G011450	Bottle gourd (USVL1VR-Ls)	cmolsiB231
CmoCh14G011450	Bottle gourd (USVL1VR-Ls)	cmolsiB245
CmoCh14G011450	Cucumber (Gy14) v2	cgybcmoB286
CmoCh14G011450	Silver-seed gourd	carcmoB0953
CmoCh14G011450	Cucumber (Chinese Long) v3	cmocucB0277
CmoCh14G011450	Wax gourd	cmowgoB0291
CmoCh14G011450	Wax gourd	cmowgoB0312