Cp4.1LG03g08630 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g08630
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	rRNA-processing protein FCF1-like protein
Location	Cp4.1LG03 : 2607591 .. 2611140 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTCTCTCTCCAGCGGGCTTGTACTGATTTTCAACTATATCGTTGTTACTGGTATTCTCCAAATCTCCTCTTAGTTGTTTTTATAGTTTTTTTAAATGACAATACCCTAATATTAAAAAGAAGAAAAAAGCTTGCGGCGAATTAAATTGGGACTTGCTGTTGATTTGTTGCACGTCTGTGAATAGACTTCGATCATCTTTGTATCTCTTTGGTTTCTGCTGGAAACGGAGTTGTTCTGATACCTTGAATTTCTAGCATCTCCCTTTTATGTTTATCAGATAATTAGTGGGAGTAATCTATCCTATTATCCAATTCTCTTGTAATCCTATTTGTATATTCATAGATTATAGTTGGGGAGAAGACAATGAGTTTTTAATTGAATTGAACTTCTCTTACTCAGATTAACCAATTCAAAATCCAATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCGTGAAGAAGATGATCTCTTCTAAAGCGATTAAAAAGTATGCCTTCTATATTTTCTTTTGAATTGATAACTTTATCCTATTTTGTTTCAATCTTTTATTTTTCTCTTGTTTTTTTGTTTTTAGCTACAAGGAAGAGGTCTTGAATCCAAAAAAGAAAGATCTAACGAAAGAAAATCTCCCGAGAAACGTGTAAGGAACCTTTTGAGCTGACTGTTATGTGCTCTGTATTAATAATTTTTTCTACTCGTTGTCTATGACTAATTCATGCTTGCATTGTTGTTAATTCAGTCCAAATGTTCCTTCAGCACTTTTCTTCAAATACAACACTGCATTGGGGCCCCCTTATCGGGTTTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAAACAAAGTGAGTGCTTCAAATTTTTATAACTATCTGATTTCGACTCATTTTATCGTGTATATAACTAAAGTGAGTGCTTCAAATTTTTATAACTGTCTGATTTCGATATGTAAAGCTCATTTTATTATGGATTATTTGAATTGAATTGAATTGAAGTGGTTTTCTTCTTCTTTTCGTTCTGGTGCAGTTGGACTTGGAGAAGGGAATGATGGATTGTCTGTATGCAAAATGTAAGTTGCACTTGCAGAATTTTTTTTTATTATAATTTGAAATATGAGAAGTGATAATTAGCTGACATGTGTGCTTACTTGTGATCGTGTTATAGGCACCCCTTGTATAACAGATTGCGTGATGGCTGAACTTGAGCGATTAGGTCAGAAGTATCGCGTTGCTCTTAGGTAAATTCATGTTTAATTTGTGATATTTCAGAACATGAATTTTCTATGTTCTTAAGTATCGCGTTGCTGTTAGGTAAATTCATGTTTAATTTGTGATATTTCAGAACATGAATTTTTATGTTCTCATTTTTGGGTACTATACACATGTATGTACACATTCAGATGCTTTTTGAGATTCGCTAGAGTTAGTCGATATTGTGTGCGCATCTGGTCTTTAACTTTTTAGAATTTTGAATGGCAGCACTAATCAAATTGTTGATTGAAGATCATGAAAAAAAAAAAAAAATCTATGAAAAATTTAGTGTTATGATTGGCTACCTGTAAGAAGCAACTTTCATTTTTTATTACTCTCCTTGACAGTTTCTCAAGAAATTTCTGGCTCAATATTAATCCAAGCAGTCTTATCTTTATTTGTCTTTTAGAAAAGGTCTTAGCTTTACCCTTGATTTGAGCAAGAATCTGAAATAAACAGCTCCTCCATTAACAACATTTTTGGACATACAGCCAAAATCTTTGGACGAACACGGTGAAAGCTTAATTTTGCACATTATGAATGGAAAGAAATAAAATAAGGTTTTCATATACTTTCATGGCGATAGGATTCTTTGCAAACAATACTATATTCTTGGTTTTTCTTTGGTGTTCTCTTTCTTGTTACTTTTGTAAATATATTTTTCTTAAAGATCAATGCTTGTTTCCTTCTTTTGCATCTCTCTTGTTGGTACTGATTAGTATTTTTGGGCTCGAGCAGAATAGCTAAGGACCCACGATTCGAGAGACTACCATGTACTCATAAAGGAACCTATGCTGATGATTGCCTTGTCGAAAGGGTGACTCAGGTGAGACTGAAAGCTTTTTGCCCATGATCATGTTCATAAACGATGAGTTTTCCGACTTCATGTTTGTTCATCGTTATACATGTCGCAAACCAGTTTAAATTGTATCTCTCTTCTTTAAGCTTATCTTCATAAAGAAACTATCATATAGTTAGCTACAGACTTATAGTATGGTTATTATATTTGTAAGCTAGTCAACATTTTTTTTAAAAAAGATACCAAGGAAGAATCGGGTACCGAAGCTCTCACGATGGATAAAATTATAAGAAAAAAGGGGTGAATTATTGTTTTGAAATTGAAATGTTCATAGTGAGCTAAATGCTTCTCTTTCACTGTTTTGGTATCTTTTTAACAGAAGTTTTGTTTGTGTGCAGCATAAGTGTTATATCGTTGCCACTTGTGACAGAGATTTAAAGCGTAGGATTCGTAAGGTATAATGAAAAGAGATATAATCCGACCATAATAGTTGGCAATATAGTTAGATAAAGTAACGTGTTTATTTTATTGCAGATTCCTGGTGTACCAATCATGTACATAACCCGACATCAGTATTCAATTGAGCGGTTGCCTGAAGCAACAATGGGAGGAGGTAGGCTAAACATGTCTAACCCATATAATAAATGTTAATGGACTTAGTTTCTTATTTGTCTAACCCATATAGAATGATGGAAGGATTATTCAAGTTCTTGTTCGGTCATTCAACCCAACGATTGAATTCGTTTATGGTCCTTTGATTTATCTTATTTCTAATTGGTGGTGATAATGAATGGGTCTTTCTTTTTGTGATGTTCCACATTGGTTCGGGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGTAGATGCCTAGTGGGGAAGCCCACAAGGGAAAGCCCAAAAACCTTGAGGGGAAGCCCAGATGGGAAAGCCCAAAGAGGACAGTATCTGGATGACGTTCCGCTGTGTAACTTTGAAATATGTGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAACCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGCCGTTACACTTTCTGTATCTCTGTTTGAGTTGCGGTGACGAAGTCTTTTTATATTTTTTGTACACTAATATTTGACATTTTTATTATGGTTGATGCAGCTCCAAGGATGTGATTGTGGCAGTTTGCAAGGATGACAAAAGGAAAAGAATTTTTGAAGAGGTTTCCCCATGTAACTTACTTTTGGCCTTAGGTTAATGCTGTATTTATACGGTGTTTAAGATTATATTTTTGACTGGCATGAGCTTAGTCTGATAGAATTAATCACATATTTGTTTGAATGAATATCAGCCATATCATATATGGTGGATTTGCTTCTCCACCACAAGTTAAAAATATCTCAAGCTCACCACAAGGTGTGAATCCACCTAAAGGTCAAACTTAATGTCTTGGACCATGTCTAAGCACTTAGTTTGAGGCAAATAGTATTG

mRNA sequence

CAGTCTCTCTCCAGCGGGCTTGTACTGATTTTCAACTATATCGTTGTTACTGATTAACCAATTCAAAATCCAATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCGTGAAGAAGATGATCTCTTCTAAAGCGATTAAAAACTACAAGGAAGAGGTCTTGAATCCAAAAAAGAAAGATCTAACGAAAGAAAATCTCCCGAGAAACGTTCCAAATGTTCCTTCAGCACTTTTCTTCAAATACAACACTGCATTGGGGCCCCCTTATCGGGTTTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAAACAAATTGGACTTGGAGAAGGGAATGATGGATTGTCTGTATGCAAAATGCACCCCTTGTATAACAGATTGCGTGATGGCTGAACTTGAGCGATTAGGTCAGAAGTATCGCGTTGCTCTTAGAATAGCTAAGGACCCACGATTCGAGAGACTACCATGTACTCATAAAGGAACCTATGCTGATGATTGCCTTGTCGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCCACTTGTGACAGAGATTTAAAGCGTAGGATTCGTAAGATTCCTGGTGTACCAATCATGTACATAACCCGACATCAGTATTCAATTGAGCGGTTGCCTGAAGCAACAATGGGAGGAGCTCCAAGGATGTGATTGTGGCAGTTTGCAAGGATGACAAAAGGAAAAGAATTTTTGAAGAGGTTTCCCCATGTAACTTACTTTTGGCCTTAGGTTAATGCTGTATTTATACGGTGTTTAAGATTATATTTTTGACTGGCATGAGCTTAGTCTGATAGAATTAATCACATATTTGTTTGAATGAATATCAGCCATATCATATATGGTGGATTTGCTTCTCCACCACAAGTTAAAAATATCTCAAGCTCACCACAAGGTGTGAATCCACCTAAAGGTCAAACTTAATGTCTTGGACCATGTCTAAGCACTTAGTTTGAGGCAAATAGTATTG

Coding sequence (CDS)

ATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCGTGAAGAAGATGATCTCTTCTAAAGCGATTAAAAACTACAAGGAAGAGGTCTTGAATCCAAAAAAGAAAGATCTAACGAAAGAAAATCTCCCGAGAAACGTTCCAAATGTTCCTTCAGCACTTTTCTTCAAATACAACACTGCATTGGGGCCCCCTTATCGGGTTTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAAACAAATTGGACTTGGAGAAGGGAATGATGGATTGTCTGTATGCAAAATGCACCCCTTGTATAACAGATTGCGTGATGGCTGAACTTGAGCGATTAGGTCAGAAGTATCGCGTTGCTCTTAGAATAGCTAAGGACCCACGATTCGAGAGACTACCATGTACTCATAAAGGAACCTATGCTGATGATTGCCTTGTCGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCCACTTGTGACAGAGATTTAAAGCGTAGGATTCGTAAGATTCCTGGTGTACCAATCATGTACATAACCCGACATCAGTATTCAATTGAGCGGTTGCCTGAAGCAACAATGGGAGGAGCTCCAAGGATGTGA

Protein sequence

MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATMGGAPRM

Homology

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BLAST of Cp4.1LG03g08630 vs. Swiss-Prot
Match: FCF1_HUMAN (rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.6e-76
Identity = 140/199 (70.35%), Postives = 164/199 (82.41%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PKKK+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

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BLAST of Cp4.1LG03g08630 vs. Swiss-Prot
Match: FCF1_PONAB (rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.6e-76
Identity = 140/199 (70.35%), Postives = 164/199 (82.41%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PKKK+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. Swiss-Prot
Match: FCF1_BOVIN (rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.6e-76
Identity = 140/199 (70.35%), Postives = 164/199 (82.41%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PKKK+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. Swiss-Prot
Match: FCF1_MOUSE (rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 4.0e-75
Identity = 137/199 (68.84%), Postives = 164/199 (82.41%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENL--PRNVPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PKKK+    +    R VP  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQK+RVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRF+RLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMY++
Sbjct: 121 LRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. Swiss-Prot
Match: FCF1_YEAST (rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-64
Identity = 118/189 (62.43%), Postives = 148/189 (78.31%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKK  KF +VK+ +++K  +  K+   N K K+     L RN+P V SALFF+YN A
Sbjct: 1   MGKAKKTRKFGLVKRTLNTKKDQRLKKNQENIKTKE--DPELTRNIPQVSSALFFQYNQA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           + PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELE+LG KYR+AL+
Sbjct: 61  IKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRIALK 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           +A+DPR +RL C+HKGTYADDCLV RV QHKCYIVAT D  LK+RIRKIPG+P+M +  H
Sbjct: 121 LARDPRIKRLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPLMSVGGH 180

Query: 181 QYSIERLPE 190
            Y IE+LP+
Sbjct: 181 AYVIEKLPD 187

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BLAST of Cp4.1LG03g08630 vs. TrEMBL
Match: A0A0A0LEW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G821570 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.3e-109
Identity = 192/198 (96.97%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKEEVLNPK+KDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. TrEMBL
Match: M5X2D5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011750mg PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 6.3e-104
Identity = 183/197 (92.89%), Postives = 193/197 (97.97%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRA+KGPKFAV+KK+++SKAIK+YKEEVLNP KKDLTKE LPRNVPNV SALFFKYNTA
Sbjct: 1   MGRARKGPKFAVMKKVVTSKAIKSYKEEVLNPNKKDLTKEKLPRNVPNVSSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIERLPEAT+GGAPR
Sbjct: 181 KYSIERLPEATIGGAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. TrEMBL
Match: A0A162A1Q9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_017055 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 4.1e-103
Identity = 183/197 (92.89%), Postives = 189/197 (95.94%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAVVKKMI+SKAIK YKE VLNP KKDL  E LPRNVP+  SALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMITSKAIKTYKENVLNPNKKDLQSEKLPRNVPSTSSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCY+VATCDRDLKRRIRKIPGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYMVATCDRDLKRRIRKIPGVPIMYITKH 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIERLPEATMGGAPR
Sbjct: 181 KYSIERLPEATMGGAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. TrEMBL
Match: A0A059C017_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00082 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 7.7e-102
Identity = 178/197 (90.36%), Postives = 193/197 (97.97%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFA +KK+++SKAIKNYK+EVLNP KKDL+KE LPRNVPNV SALFFK+N+A
Sbjct: 1   MGRAKKGPKFAAMKKIVTSKAIKNYKQEVLNPNKKDLSKEKLPRNVPNVSSALFFKHNSA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPY+VLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCIT+CVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYQVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITECVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIM+IT+H
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMFITQH 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIERLPEAT+GGAPR
Sbjct: 181 KYSIERLPEATIGGAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. TrEMBL
Match: B9RH52_RICCO (Protein C14orf111, putative OS=Ricinus communis GN=RCOM_1447280 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.0e-101
Identity = 178/197 (90.36%), Postives = 191/197 (96.95%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFA +KK+I+SKAIK+YKEEVLNPKKKDL+K+ LPRNVP V SAL+FKYNTA
Sbjct: 1   MGRAKKGPKFAAMKKIITSKAIKHYKEEVLNPKKKDLSKDKLPRNVPQVSSALYFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPC HKGTYADDC+V+RVTQHKCYIVATCDRDLKRRIRK+PGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCIHKGTYADDCIVDRVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITQH 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIERLPEATMGGAPR
Sbjct: 181 KYSIERLPEATMGGAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. TAIR10
Match: AT2G46230.1 (AT2G46230.1 PIN domain-like family protein)

HSP 1 Score: 347.4 bits (890), Expect = 5.7e-96
Identity = 166/197 (84.26%), Postives = 181/197 (91.88%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKK  KFAVVKKMIS KA+K+YKEEVLNP KKDLT+  LPRNVP+VP+ LFF YN+ 
Sbjct: 1   MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPAGLFFSYNST 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDP FERLPC HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T  
Sbjct: 121 IAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTNR 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIE+LPEAT+GGAPR
Sbjct: 181 KYSIEKLPEATLGGAPR 195

[Close]

BLAST of Cp4.1LG03g08630 vs. TAIR10
Match: AT1G26530.1 (AT1G26530.1 PIN domain-like family protein)

HSP 1 Score: 265.8 bits (678), Expect = 2.2e-71
Identity = 137/197 (69.54%), Postives = 156/197 (79.19%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGR KK  KFAV+K MIS KA+K+YKEEVLNP KKDLT+  LPRNVP+VPS LFF +N++
Sbjct: 1   MGRTKKPQKFAVMKMMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPSGLFFSHNSS 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGMM                  + ++   Y     
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGMM----------------VFVRKMHSLYYGL-- 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPC  KGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T+ 
Sbjct: 121 IAKDPRFERLPCVLKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTQR 177

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIE+LPEAT+GGAPR
Sbjct: 181 KYSIEKLPEATIGGAPR 177

[Close]

BLAST of Cp4.1LG03g08630 vs. TAIR10
Match: AT2G34570.1 (AT2G34570.1 PIN domain-like family protein)

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-08
Identity = 39/149 (26.17%), Postives = 73/149 (48.99%), Query Frame = 1


Query: 44  RNVPNVPSALFFKYNTALGPPYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITD 103
           R   N  +  FF        PY+VL D  F++  + N++   +  + + L        T 
Sbjct: 5   RQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKLFTTR 64

Query: 104 CVMAELERLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVERV----TQHKCYIVAT 163
           CV+AELE+LG+ +  +L  A+        C H +   AD+CL E +    T+H  + + T
Sbjct: 65  CVIAELEKLGKDFAESLEAAQ--TLNTATCEHEEAKTADECLSEVIGVQNTEH--FFLGT 124

Query: 164 CDRDLKRRIRKIPGVPIMYITRHQYSIER 187
            D + +R++++   VP+++  R+   I++
Sbjct: 125 QDAEFRRKLQQESIVPLVFGLRNILLIDQ 149

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: gi|449437727|ref|XP_004136642.1| (PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis sativus])

HSP 1 Score: 403.7 bits (1036), Expect = 1.9e-109
Identity = 192/198 (96.97%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKEEVLNPK+KDLTKENLPRNVPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: gi|659085148|ref|XP_008443271.1| (PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 2.7e-108
Identity = 190/198 (95.96%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KK+++SKAIKNYK+EVLNPK+KDLTKENLPRNVPNVPSALFFK+NTA
Sbjct: 1   MGRAKKGPKFAVMKKLVTSKAIKNYKQEVLNPKRKDLTKENLPRNVPNVPSALFFKHNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: gi|470142004|ref|XP_004306712.1| (PREDICTED: rRNA-processing protein FCF1 homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 384.8 bits (987), Expect = 9.1e-104
Identity = 182/197 (92.39%), Postives = 194/197 (98.48%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MG+AKKGPKFAV+KK+++ KAIKNYKEEVLNPKKKD++KE LPRNVPNVPSALFF+YNTA
Sbjct: 1   MGKAKKGPKFAVMKKVVTKKAIKNYKEEVLNPKKKDISKEKLPRNVPNVPSALFFEYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERL CTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT+H
Sbjct: 121 IAKDPRFERLLCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIERLPEAT+GGAPR
Sbjct: 181 KYSIERLPEATIGGAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: gi|596006740|ref|XP_007218447.1| (hypothetical protein PRUPE_ppa011750mg [Prunus persica])

HSP 1 Score: 384.8 bits (987), Expect = 9.1e-104
Identity = 183/197 (92.89%), Postives = 193/197 (97.97%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRA+KGPKFAV+KK+++SKAIK+YKEEVLNP KKDLTKE LPRNVPNV SALFFKYNTA
Sbjct: 1   MGRARKGPKFAVMKKVVTSKAIKSYKEEVLNPNKKDLTKEKLPRNVPNVSSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIERLPEAT+GGAPR
Sbjct: 181 KYSIERLPEATIGGAPR 197

[Close]

BLAST of Cp4.1LG03g08630 vs. NCBI nr
Match: gi|645254236|ref|XP_008232947.1| (PREDICTED: rRNA-processing protein FCF1 homolog [Prunus mume])

HSP 1 Score: 382.1 bits (980), Expect = 5.9e-103
Identity = 182/197 (92.39%), Postives = 192/197 (97.46%), Query Frame = 1


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60
           MGRA+KGPKFAV+KK+++SKAIK+YKE VLNP KKDLTKE LPRNVPNV SALFFKYNTA
Sbjct: 1   MGRARKGPKFAVMKKVVTSKAIKSYKEGVLNPNKKDLTKEKLPRNVPNVSSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIERLPEAT+GGAPR
Sbjct: 181 KYSIERLPEATIGGAPR 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g08630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FCF1_HUMAN	3.6e-76	70.35	rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1	[more]
FCF1_PONAB	3.6e-76	70.35	rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1	[more]
FCF1_BOVIN	3.6e-76	70.35	rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1	[more]
FCF1_MOUSE	4.0e-75	68.84	rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2	[more]
FCF1_YEAST	1.9e-64	62.43	rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of Cp4.1LG03g08630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEW8_CUCSA	1.3e-109	96.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G821570 PE=4 SV=1	[more]
M5X2D5_PRUPE	6.3e-104	92.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011750mg PE=4 SV=1	[more]
A0A162A1Q9_DAUCA	4.1e-103	92.89	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_017055 PE=4 SV=1	[more]
A0A059C017_EUCGR	7.7e-102	90.36	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00082 PE=4 SV=1	[more]
B9RH52_RICCO	1.0e-101	90.36	Protein C14orf111, putative OS=Ricinus communis GN=RCOM_1447280 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g08630 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46230.1	5.7e-96	84.26	PIN domain-like family protein	[more]
AT1G26530.1	2.2e-71	69.54	PIN domain-like family protein	[more]
AT2G34570.1	5.8e-08	26.17	PIN domain-like family protein	[more]

BLAST of Cp4.1LG03g08630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437727\|ref\|XP_004136642.1\|	1.9e-109	96.97	PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis sativus]	[more]
gi\|659085148\|ref\|XP_008443271.1\|	2.7e-108	95.96	PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis melo]	[more]
gi\|470142004\|ref\|XP_004306712.1\|	9.1e-104	92.39	PREDICTED: rRNA-processing protein FCF1 homolog [Fragaria vesca subsp. vesca]	[more]
gi\|596006740\|ref\|XP_007218447.1\|	9.1e-104	92.89	hypothetical protein PRUPE_ppa011750mg [Prunus persica]	[more]
gi\|645254236\|ref\|XP_008232947.1\|	5.9e-103	92.39	PREDICTED: rRNA-processing protein FCF1 homolog [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0032040	small-subunit processome

Vocabulary: **INTERPRO**
Term	Definition
IPR006984	Fcf1/Utp23
IPR002716	PIN_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0042432	indole biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0006412	translation
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016844	strictosidine synthase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g08630.1	Cp4.1LG03g08630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002716	PIN domain	SMART	SM00670	PIN_9	coord: 65..164 score: 8.6
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 90..186 score: 1.1
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 51..198 score: 8.5E-121coord: 2..19 score: 8.5E
None	No IPR available	PANTHER	PTHR12416:SF2	RRNA-PROCESSING PROTEIN FCF1 HOMOLOG	coord: 51..198 score: 8.5E-121coord: 2..19 score: 8.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g08630	Cucsa.337860	Cucumber (Gy14) v1	cgycpeB0888
Cp4.1LG03g08630	CmaCh14G005140	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g08630	CmoCh14G005200	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g08630	Cla002887	Watermelon (97103) v1	cpewmB597
Cp4.1LG03g08630	Csa3G821570	Cucumber (Chinese Long) v2	cpecuB597
Cp4.1LG03g08630	MELO3C009766	Melon (DHL92) v3.5.1	cpemeB572
Cp4.1LG03g08630	ClCG10G016120	Watermelon (Charleston Gray)	cpewcgB546
Cp4.1LG03g08630	CSPI03G37910	Wild cucumber (PI 183967)	cpecpiB599
Cp4.1LG03g08630	Lsi03G016020	Bottle gourd (USVL1VR-Ls)	cpelsiB503
Cp4.1LG03g08630	MELO3C009766.2	Melon (DHL92) v3.6.1	cpemedB679
Cp4.1LG03g08630	CsaV3_3G040290	Cucumber (Chinese Long) v3	cpecucB0747
Cp4.1LG03g08630	Bhi11G002300	Wax gourd	cpewgoB0754
Cp4.1LG03g08630	CsGy3G035380	Cucumber (Gy14) v2	cgybcpeB395
Cp4.1LG03g08630	Carg03481	Silver-seed gourd	carcpeB0353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g08630	Wax gourd	cpewgoB0743
Cp4.1LG03g08630	Cucurbita maxima (Rimu)	cmacpeB682
Cp4.1LG03g08630	Cucurbita moschata (Rifu)	cmocpeB788
Cp4.1LG03g08630	Bottle gourd (USVL1VR-Ls)	cpelsiB489
Cp4.1LG03g08630	Silver-seed gourd	carcpeB0229