Carg03481 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03481
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	rRNA-processing protein FCF1 homolog
Location	Cucurbita_argyrosperma_scaffold_006 : 150691 .. 154324 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGTCTTCTCTCTGCGCGCCCTTGTTCTTCACCACTCCCTCTCTTTCGTGTCGCCGCCGCTTCTCTCCGGTTGTTGCAGCCGCCGTCGTCTTTCCCTTCTGCCGCAGCCTCTCTACCAGCGGTTTGCACTCATTCTCCCTTTCCTGTAGCCGTCGCCGTCGCCATCGCCATCGTCTTCCCTTCTGCCGCAGCCTCTCTCCAGCGGGCTTGTACTGATTTTCAACTATATCGTTGTTACTGGTATTCTCCAAATCTCCTCTTAATTGTTTATATATATTTTTTTTAAATGACAATACCCTAATATTAAAAAGAAGAAAAAAGCTTGCGGCAAATTAAATTGGGACTTGCTGTTGATTTGTTGCACGTCTGTGAATAGACTTTGATTATCTTTGCATCTCTTTGGTTTCTGCTGGAAACGGAGTTGTTCTGAGACCATGAATTTTCTAGCATCTCCCTTTTATGTTTATCAGATAATTAGTAGGAGTAATCTATCCTATTATCCAATTCTCTTGTAATCATATTTGTATATTCATAGATTATAGTTTGGGAGAAGACAATGAGTCTTTAATTGAATTGAACTCCTCCTCAGATTAATCAATTCAAAATACATCGAGATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCGTGAAGAAGATGATCTCTTCTAAAGCGATTAAAAAGTATGCCTCCTATATTTTCTTTTGAATTGATAACTTTATCCTATTTTGTTTCAATCTTTTATTTTTCTCTTGTTTTTAGCTACAAGGAAGAGGTCTTGAATCCAAAAAGGAAAGATCTAACGAAAGAAAATCTCCCAAGAAACATGTAAGGAACCTTTTGAGCTGACTGTTATGTGCTCTGTATTAATAATTTTCTTTTACTCGTTGTCTATGACTAATTCATGCTTGCATTGTTGTTAATTCAGTCCAAATGTTCCTTCAGCACTTTTCTTCAAATACAACACTGCATTGGGGCCCCCTTATCGGGTTTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAAACAAAGTGAGTGCTTCAAATTTTTATAACTATCTGATTTCGATATGTGAAGCTCATTTTTATTATGGATATAACTAAAGTGGGTGCTTCAAATTTTTATAACTGTCTGATTTCGATATGTAAAGCTCATTTTATTATGGATATAACTTGTGGATTATTTGAATTGAATTGAATTGAAGTGGTTTTCTTCTTCCTTTTTTCTGGTGCAGTTGGACTTGGAGAAGGGAATGATGGATTGTCTGTATGCAAAATGTAAGTTGCACTTAACAGAATTTTTTTATTATAATTTGAAATGTGAGAAGTGATAATCAGCTGACATGTGTGCTTACTTGTGATCGTGGTATAGGCACCCCTTGTATAACAGATTGTGTGATGGCTGAACTTGAGCGATTAGGTCAGAAGTATCGCGTTGCTCTTAGGTAAATTCATGTTTAATTTGTGATATTTCAGAAGATGAATTTTCTATGTTCTCAAGTATCGCGTTGCTGTTGGGTAAATTCATGTTTAATTTGTGATATTTTAGAAGATGAATTTTCTATGTTCTCATTTTTGGGTACTATACACATGTATGTTCACATTCAGATGCTTTTTGAGATTGGCTAGAGTTAGTCAATATTGTGTGCGCATCTGTTCTTTAACTTTTTATAATTTTGAATGCCAGCACTAATCAAATTGTTGATCGAAGATCATGAAAAAAAAAATCTATGAAAAATTTAGTGTTATGATTGGCTACCTGTAAGAAGCAACTTTCTTTTTTTTATTACTCTCCTCGACAGTTTCTCAAGAAATTTCTGGCTCAATGTTAATCCAAGCAGTCTTATCTTTATTTGTCTTTTAGAAAAGGTCTTAGCTTTACCCTTGATTTGAGCAAGAATCTGAAATAAACAGCTCCTCCATTATCAACATTTTTGGAAGTAGAGCCAAAATCTTTGGATGAACACGGTAAAAGCTTAATTTTGCACATTATGAATGGAAAGAAAAAAAATTAGGTTTTCATGTTACTTTCATGGCGATAGGATTCTTTGGAAACAATACTATATTCTTGGTTTGTCTTTGGTGTTCTCTTTCTTGTTACTTTTGTAAATATATTTTTCTTAAAGATCAATGCTTGTTTCTTTCTTTTGCATCTCTCTTGTTGGTACTGATTAGTATTTTTGGGCTTGAGCAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGATGATTGCCTTGTCGAAAGGGTGACTCAGGTGAGACTGAAAGCTTTTTGCCCATGATCGTGTTCATAAACGATGAGTTTTCCGATTTCATGTTTGTTCAGCGTTATACATGTCGCAAACCAGTTTAAATTGTATCTCTCTTCTTTAAGCTTATCTTCATAAAGAAACTATCATATAGTTAGCTACAGATTTATAGTATGGTTATTATATTTGTAAGCTAGTCAACATTTTTTTTAAAAAAGATACCAAGGAAGAATCAGGTACCTAAGCTCTCACGATGGATAAAATTATTAGAAAAAAGGGGTGAATTATTGTTTCGAAATTGAAGTGTTGATAGTGAGCTAAATGCTTCTCTTTCACTGTTTTGGTATCTTTTTAACAGAAGTTTTGTTTGTGTGCAGCATAAGTGTTATATCGTTGCCACTTGTGACAGAGATTTAAAGCGTAGGATTCGTAAGGTATAATGAAAAGAGGTATAATCCGACCATAATAGTTGGCAATATAGTTAGATAAAGTAACTTGTTTATTTTATTGCAGATTCCTGGTGTACCAATCATGTACATAACCCGACATCAGTATTCAATTGAGCGGTTGCCTGAAGCAACAATGGGAGGAGGTAGGCTAAACATGTCTAACCCATATAATAAATGTTAATGGACTTAGTTTCTTATTTGTCTAACCCATATAGAATGATGGAAGGATTATTCAAGTTCTTGTTCGATCATTCGACCCAACGATTGAATTCATATGGTCCTTTGATTTATCTTATTTCTAACGTGGTGGTGATAATGAATGGGTCTTTCTTTCTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAAACACCCTTTATCAGGGTGTGGAAACCTTCCCTTAGTAGATGCCTAATGGGGAAGCCCATAAGGGAAAGCCCAAAAGGACATTATCTAGATGAGCACGGTTCCGCTGTGTAACTCTGAAAGACGCATTTAAAGCTTTGAGGGGAAGCCTGAAAGGGAAACCCAAAGAGAACAATATATGCTAGCGGTGGATTTGAGCCGTTATACTTTAAAGCCTTTGTATCTCTGTTTGAGTTGCTGTGACGAAGTCTTTTTATATTTTTTTGTACATTAATATTTGACATCTTTATTATGGTTGATGCAGCTCCAAGGATGTGATTGTGGCAGTTTGCAAGGATGACAAAAGAAAAAGAATTTTTGAAGAGGTTTCTCCATGTAACTTACTTTTGGCCTTAGGTTAATGCTGTATTTATACGGTGTTTAAGATTATCTTTTTGACTGGCATGAGCTTAGTCCGATAGAATTAATCACATATTTGTTTGAATGAATATCAGCCATATCATATATGGTGGATTTGCTTCTCCACCACAAGTTAAAA

mRNA sequence

ATCGTCTTCTCTCTGCGCGCCCTTGTTCTTCACCACTCCCTCTCTTTCGTGTCGCCGCCGCTTCTCTCCGGTTGTTGCAGCCGCCGTCGTCTTTCCCTTCTGCCGCAGCCTCTCTACCAGCGGTTTGCACTCATTCTCCCTTTCCTGTAGCCGTCGCCGTCGCCATCGCCATCGTCTTCCCTTCTGCCGCAGCCTCTCTCCAGCGGGCTTGTACTGATTTTCAACTATATCGTTGTTACTGATTAATCAATTCAAAATACATCGAGATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCGTGAAGAAGATGATCTCTTCTAAAGCGATTAAAAACTACAAGGAAGAGGTCTTGAATCCAAAAAGGAAAGATCTAACGAAAGAAAATCTCCCAAGAAACATTCCAAATGTTCCTTCAGCACTTTTCTTCAAATACAACACTGCATTGGGGCCCCCTTATCGGGTTTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAAACAAATTGGACTTGGAGAAGGGAATGATGGATTGTCTGTATGCAAAATGCACCCCTTGTATAACAGATTGTGTGATGGCTGAACTTGAGCGATTAGGTCAGAAGTATCGCGTTGCTCTTAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGATGATTGCCTTGTCGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCCACTTGTGACAGAGATTTAAAGCGTAGGATTCGTAAGATTCCTGGTGTACCAATCATGTACATAACCCGACATCAGTATTCAATTGAGCGGTTGCCTGAAGCAACAATGGGAGGAGCTCCAAGGATGTGATTGTGGCAGTTTGCAAGGATGACAAAAGAAAAAGAATTTTTGAAGAGGTTTCTCCATGTAACTTACTTTTGGCCTTAGGTTAATGCTGTATTTATACGGTGTTTAAGATTATCTTTTTGACTGGCATGAGCTTAGTCCGATAGAATTAATCACATATTTGTTTGAATGAATATCAGCCATATCATATATGGTGGATTTGCTTCTCCACCACAAGTTAAAA

Coding sequence (CDS)

ATGGGGAGGGCCAAGAAAGGACCCAAATTTGCAGTCGTGAAGAAGATGATCTCTTCTAAAGCGATTAAAAACTACAAGGAAGAGGTCTTGAATCCAAAAAGGAAAGATCTAACGAAAGAAAATCTCCCAAGAAACATTCCAAATGTTCCTTCAGCACTTTTCTTCAAATACAACACTGCATTGGGGCCCCCTTATCGGGTTTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAAACAAATTGGACTTGGAGAAGGGAATGATGGATTGTCTGTATGCAAAATGCACCCCTTGTATAACAGATTGTGTGATGGCTGAACTTGAGCGATTAGGTCAGAAGTATCGCGTTGCTCTTAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGATGATTGCCTTGTCGAAAGGGTGACTCAGCATAAGTGTTATATCGTTGCCACTTGTGACAGAGATTTAAAGCGTAGGATTCGTAAGATTCCTGGTGTACCAATCATGTACATAACCCGACATCAGTATTCAATTGAGCGGTTGCCTGAAGCAACAATGGGAGGAGCTCCAAGGATGTGA

Protein sequence

MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATMGGAPRM

Homology

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BLAST of Carg03481 vs. NCBI nr
Match: XP_022935178.1 (rRNA-processing protein FCF1 homolog [Cucurbita moschata] >XP_022983875.1 rRNA-processing protein FCF1 homolog [Cucurbita maxima] >XP_022983876.1 rRNA-processing protein FCF1 homolog [Cucurbita maxima])

HSP 1 Score: 409.8 bits (1052), Expect = 5.1e-111
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEATMGGAPRM
Sbjct: 181 QYSIERLPEATMGGAPRM 198

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BLAST of Carg03481 vs. NCBI nr
Match: XP_023526473.1 (rRNA-processing protein FCF1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.3 bits (1048), Expect = 1.5e-110
Identity = 196/198 (98.99%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPK+KDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEATMGGAPRM
Sbjct: 181 QYSIERLPEATMGGAPRM 198

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BLAST of Carg03481 vs. NCBI nr
Match: XP_004136642.1 (PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hypothetical protein Csa_3G821570 [Cucumis sativus])

HSP 1 Score: 404.8 bits (1039), Expect = 1.6e-109
Identity = 192/198 (96.97%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKEEVLNPKRKDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Carg03481 vs. NCBI nr
Match: XP_022158778.1 (rRNA-processing protein FCF1 homolog [Momordica charantia] >XP_022158779.1 rRNA-processing protein FCF1 homolog [Momordica charantia])

HSP 1 Score: 401.4 bits (1030), Expect = 1.8e-108
Identity = 189/198 (95.45%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MG+AKKGPKFAV+KKM++SKAIKNYK+EVLNPK+KDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGKAKKGPKFAVMKKMVTSKAIKNYKQEVLNPKKKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Carg03481 vs. NCBI nr
Match: XP_008443271.1 (PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis melo] >XP_008443272.1 PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis melo])

HSP 1 Score: 401.0 bits (1029), Expect = 2.4e-108
Identity = 190/198 (95.96%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KK+++SKAIKNYK+EVLNPKRKDLTKENLPRN+PNVPSALFFK+NTA
Sbjct: 1   MGRAKKGPKFAVMKKLVTSKAIKNYKQEVLNPKRKDLTKENLPRNVPNVPSALFFKHNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Carg03481 vs. TAIR10
Match: AT2G46230.1 (PIN domain-like family protein)

HSP 1 Score: 346.3 bits (887), Expect = 1.3e-95
Identity = 164/197 (83.25%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MG+AKK  KFAVVKKMIS KA+K+YKEEVLNP +KDLT+  LPRN+P+VP+ LFF YN+ 
Sbjct: 1   MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPAGLFFSYNST 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDP FERLPC HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T  
Sbjct: 121 IAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTNR 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIE+LPEAT+GGAPR
Sbjct: 181 KYSIEKLPEATLGGAPR 195

[Close]

BLAST of Carg03481 vs. TAIR10
Match: AT1G26530.1 (PIN domain-like family protein)

HSP 1 Score: 264.6 bits (675), Expect = 4.8e-71
Identity = 135/197 (68.53%), Postives = 156/197 (79.19%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MGR KK  KFAV+K MIS KA+K+YKEEVLNP +KDLT+  LPRN+P+VPS LFF +N++
Sbjct: 1   MGRTKKPQKFAVMKMMISHKALKHYKEEVLNPNKKDLTE--LPRNVPSVPSGLFFSHNSS 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM                M  + ++   Y     
Sbjct: 61  LVPPYRVLVDTNFINFSIQNKIDLEKGM----------------MVFVRKMHSLYYGL-- 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPC  KGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T+ 
Sbjct: 121 IAKDPRFERLPCVLKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTQR 177

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIE+LPEAT+GGAPR
Sbjct: 181 KYSIEKLPEATIGGAPR 177

[Close]

BLAST of Carg03481 vs. TAIR10
Match: AT2G34570.1 (PIN domain-like family protein)

HSP 1 Score: 54.7 bits (130), Expect = 7.6e-08
Identity = 39/149 (26.17%), Postives = 73/149 (48.99%), Query Frame = 0


Query: 44  RNIPNVPSALFFKYNTALGPPYRVLVDTNFINFSIQNKL-DLEKGMMDCLYAKCTPCITD 103
           R   N  +  FF        PY+VL D  F++  + N++   +  + + L        T 
Sbjct: 5   RQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKLFTTR 64

Query: 104 CVMAELERLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVERV----TQHKCYIVAT 163
           CV+AELE+LG+ +  +L  A+        C H +   AD+CL E +    T+H  + + T
Sbjct: 65  CVIAELEKLGKDFAESLEAAQ--TLNTATCEHEEAKTADECLSEVIGVQNTEH--FFLGT 124

Query: 164 CDRDLKRRIRKIPGVPIMYITRHQYSIER 187
            D + +R++++   VP+++  R+   I++
Sbjct: 125 QDAEFRRKLQQESIVPLVFGLRNILLIDQ 149

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BLAST of Carg03481 vs. Swiss-Prot
Match: sp|Q32PD0|FCF1_BOVIN (rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 6.2e-76
Identity = 138/199 (69.35%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENL--PRNIPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PK+K+    +    R +P  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Carg03481 vs. Swiss-Prot
Match: sp|Q9Y324|FCF1_HUMAN (rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 6.2e-76
Identity = 138/199 (69.35%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENL--PRNIPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PK+K+    +    R +P  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Carg03481 vs. Swiss-Prot
Match: sp|Q5RFQ0|FCF1_PONAB (rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 6.2e-76
Identity = 138/199 (69.35%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENL--PRNIPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PK+K+    +    R +P  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMYI+
Sbjct: 121 LRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Carg03481 vs. Swiss-Prot
Match: sp|Q9CTH6|FCF1_MOUSE (rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 281.6 bits (719), Expect = 6.9e-75
Identity = 135/199 (67.84%), Postives = 164/199 (82.41%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENL--PRNIPNVPSALFFKYN 60
           MG+ KK  K+A +K+M+S +  +  +++ L PK+K+    +    R +P  PS LFF+YN
Sbjct: 1   MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYN 60

Query: 61  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 120
           T LGPPY +LVDTNFINFSI+ KLDL + MMDCLYAKC PCITDCVMAE+E+LGQK+RVA
Sbjct: 61  TQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVA 120

Query: 121 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 180
           LRIAKDPRF+RLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGVPIMY++
Sbjct: 121 LRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLS 180

Query: 181 RHQYSIERLPEATMGGAPR 198
            H+Y+IER+P+    GAPR
Sbjct: 181 NHRYNIERMPDDY--GAPR 197

[Close]

BLAST of Carg03481 vs. Swiss-Prot
Match: sp|Q05498|FCF1_YEAST (rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FCF1 PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-63
Identity = 118/192 (61.46%), Postives = 148/192 (77.08%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSK---AIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKY 60
           MG+AKK  KF +VK+ +++K    +K  +E +      +LT     RNIP V SALFF+Y
Sbjct: 1   MGKAKKTRKFGLVKRTLNTKKDQRLKKNQENIXXXXXPELT-----RNIPQVSSALFFQY 60

Query: 61  NTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRV 120
           N A+ PPY+VL+DTNFINFSIQ K+D+ +GMMDCL AKC P ITDCVMAELE+LG KYR+
Sbjct: 61  NQAIKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRI 120

Query: 121 ALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYI 180
           AL++A+DPR +RL C+HKGTYADDCLV RV QHKCYIVAT D  LK+RIRKIPG+P+M +
Sbjct: 121 ALKLARDPRIKRLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPLMSV 180

Query: 181 TRHQYSIERLPE 190
             H Y IE+LP+
Sbjct: 181 GGHAYVIEKLPD 187

[Close]

BLAST of Carg03481 vs. TrEMBL
Match: tr|A0A0A0LEW8|A0A0A0LEW8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 1.1e-109
Identity = 192/198 (96.97%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KKM++SKAIKNYKEEVLNPKRKDLTKENLPRN+PNVPSALFFKYNTA
Sbjct: 1   MGRAKKGPKFAVMKKMVTSKAIKNYKEEVLNPKRKDLTKENLPRNVPNVPSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Carg03481 vs. TrEMBL
Match: tr|A0A1S3B8E3|A0A1S3B8E3_CUCME (rRNA-processing protein FCF1 homolog OS=Cucumis melo OX=3656 GN=LOC103486894 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.6e-108
Identity = 190/198 (95.96%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MGRAKKGPKFAV+KK+++SKAIKNYK+EVLNPKRKDLTKENLPRN+PNVPSALFFK+NTA
Sbjct: 1   MGRAKKGPKFAVMKKLVTSKAIKNYKQEVLNPKRKDLTKENLPRNVPNVPSALFFKHNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           QYSIERLPEAT+GGAPRM
Sbjct: 181 QYSIERLPEATIGGAPRM 198

[Close]

BLAST of Carg03481 vs. TrEMBL
Match: tr|M5X2D5|M5X2D5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G181300 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.6e-103
Identity = 181/197 (91.88%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MGRA+KGPKFAV+KK+++SKAIK+YKEEVLNP +KDLTKE LPRN+PNV SALFFKYNTA
Sbjct: 1   MGRARKGPKFAVMKKVVTSKAIKSYKEEVLNPNKKDLTKEKLPRNVPNVSSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEK MMDCLYAKCTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITQH 180

Query: 181 QYSIERLPEATMGGAPR 198
           +YSIERLPEAT+GGAPR
Sbjct: 181 KYSIERLPEATIGGAPR 197

[Close]

BLAST of Carg03481 vs. TrEMBL
Match: tr|A0A2P5FTT2|A0A2P5FTT2_9ROSA (rRNA-processing protein Fcf1/Utp OS=Trema orientalis OX=63057 GN=TorRG33x02_029330 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 5.8e-103
Identity = 177/198 (89.39%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MG+AKKGPKFAV+KK+++SKAIKNYKEEVLNP +KDLTKE LPRN+PNV SALFFKYNTA
Sbjct: 1   MGKAKKGPKFAVMKKVVTSKAIKNYKEEVLNPNKKDLTKERLPRNVPNVSSALFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGM+DCLYAKCTPCITDCVMAELE+LGQKYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMLDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPCTHKGTYADDC+V+RVTQHKC+IVATCDRDLKRRIRK+PGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCTHKGTYADDCIVDRVTQHKCFIVATCDRDLKRRIRKVPGVPIMYITQH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           +YSIER+PEAT+GGAPR+
Sbjct: 181 KYSIERMPEATVGGAPRI 198

[Close]

BLAST of Carg03481 vs. TrEMBL
Match: tr|A0A2I0J1S6|A0A2I0J1S6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_029901 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 5.8e-103
Identity = 180/198 (90.91%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MGRAKKGPKFAVVKKMISSKAIKNYKEEVLNPKRKDLTKENLPRNIPNVPSALFFKYNTA 60
           MGRAKKGPKFA +KK+I+SKAIKNYKEEVLNP +KDL+KE LPRN+PNVPS LFFKYNTA
Sbjct: 1   MGRAKKGPKFASMKKIITSKAIKNYKEEVLNPNKKDLSKEKLPRNVPNVPSVLFFKYNTA 60

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALR 120
           LGPPYRVLVDTNFINFSIQNKLDLEKGMM CLYAKCTPCITDCVMAELE+LG+KYRVALR
Sbjct: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMGCLYAKCTPCITDCVMAELEKLGEKYRVALR 120

Query: 121 IAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITRH 180
           IAKDPRFERLPC HKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT+H
Sbjct: 121 IAKDPRFERLPCIHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKH 180

Query: 181 QYSIERLPEATMGGAPRM 199
           +YSIERLPEAT+GGAPR+
Sbjct: 181 KYSIERLPEATLGGAPRL 198

The following BLAST results are available for this feature:

BLAST of Carg03481 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935178.1	5.1e-111	100.00	rRNA-processing protein FCF1 homolog [Cucurbita moschata] >XP_022983875.1 rRNA-p...	[more]
XP_023526473.1	1.5e-110	98.99	rRNA-processing protein FCF1 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_004136642.1	1.6e-109	96.97	PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hy...	[more]
XP_022158778.1	1.8e-108	95.45	rRNA-processing protein FCF1 homolog [Momordica charantia] >XP_022158779.1 rRNA-...	[more]
XP_008443271.1	2.4e-108	95.96	PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis melo] >XP_008443272.1 P...	[more]

BLAST of Carg03481 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46230.1	1.3e-95	83.25	PIN domain-like family protein	[more]
AT1G26530.1	4.8e-71	68.53	PIN domain-like family protein	[more]
AT2G34570.1	7.6e-08	26.17	PIN domain-like family protein	[more]

BLAST of Carg03481 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q32PD0\|FCF1_BOVIN	6.2e-76	69.35	rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1	[more]
sp\|Q9Y324\|FCF1_HUMAN	6.2e-76	69.35	rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=2 SV=1	[more]
sp\|Q5RFQ0\|FCF1_PONAB	6.2e-76	69.35	rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1	[more]
sp\|Q9CTH6\|FCF1_MOUSE	6.9e-75	67.84	rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2	[more]
sp\|Q05498\|FCF1_YEAST	1.2e-63	61.46	rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of Carg03481 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LEW8\|A0A0A0LEW8_CUCSA	1.1e-109	96.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=4 SV=1	[more]
tr\|A0A1S3B8E3\|A0A1S3B8E3_CUCME	1.6e-108	95.96	rRNA-processing protein FCF1 homolog OS=Cucumis melo OX=3656 GN=LOC103486894 PE=...	[more]
tr\|M5X2D5\|M5X2D5_PRUPE	2.6e-103	91.88	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G181300 PE=4 SV=1	[more]
tr\|A0A2P5FTT2\|A0A2P5FTT2_9ROSA	5.8e-103	89.39	rRNA-processing protein Fcf1/Utp OS=Trema orientalis OX=63057 GN=TorRG33x02_0293...	[more]
tr\|A0A2I0J1S6\|A0A2I0J1S6_PUNGR	5.8e-103	90.91	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_029901 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0032040	small-subunit processome

Vocabulary: **INTERPRO**
Term	Definition
IPR029060	PIN-like_dom_sf
IPR037503	Fcf1_PIN
IPR006984	Fcf1/Utp23
IPR002716	PIN_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03481-RA	Carg03481-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002716	PIN domain	SMART	SM00670	PIN_9	coord: 65..164 e-value: 8.6E-15 score: 65.1
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 90..186 e-value: 5.0E-42 score: 142.2
None	No IPR available	GENE3D	G3DSA:3.40.50.1010		coord: 51..193 e-value: 3.4E-50 score: 171.9
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 1..193
None	No IPR available	PANTHER	PTHR12416:SF2	RRNA-PROCESSING PROTEIN FCF1 HOMOLOG	coord: 1..193
IPR037503	rRNA-processing protein Fcf1, PIN domain	CDD	cd09864	PIN_Fcf1	coord: 53..187 e-value: 2.14511E-104 score: 298.768
IPR029060	PIN-like domain superfamily	SUPERFAMILY	SSF88723	PIN domain-like	coord: 63..187

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03481	Cla002887	Watermelon (97103) v1	carwmB0237
Carg03481	Csa3G821570	Cucumber (Chinese Long) v2	carcuB0276
Carg03481	MELO3C009766	Melon (DHL92) v3.5.1	carmeB0251
Carg03481	ClCG10G016120	Watermelon (Charleston Gray)	carwcgB0240
Carg03481	CSPI03G37910	Wild cucumber (PI 183967)	carcpiB0280
Carg03481	Cucsa.337860	Cucumber (Gy14) v1	carcgyB0296
Carg03481	Lsi03G016020	Bottle gourd (USVL1VR-Ls)	carlsiB225
Carg03481	Cp4.1LG03g08630	Cucurbita pepo (Zucchini)	carcpeB0353
Carg03481	CsGy3G035380	Cucumber (Gy14) v2	carcgybB0263
Carg03481	MELO3C009766.2	Melon (DHL92) v3.6.1	carmedB0261
Carg03481	CsaV3_3G040290	Cucumber (Chinese Long) v3	carcucB0279
Carg03481	Cla97C10G199020	Watermelon (97103) v2	carwmbB0254
Carg03481	Bhi11G002300	Wax gourd	carwgoB0318

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03481	Silver-seed gourd	carcarB182
Carg03481	Cucurbita maxima (Rimu)	carcmaB0343
Carg03481	Cucurbita maxima (Rimu)	carcmaB0349
Carg03481	Cucurbita moschata (Rifu)	carcmoB0347
Carg03481	Cucurbita moschata (Rifu)	carcmoB0350
Carg03481	Cucurbita pepo (Zucchini)	carcpeB0349
Carg03481	Cucurbita pepo (Zucchini)	carcpeB0355
Carg03481	Bottle gourd (USVL1VR-Ls)	carlsiB224
Carg03481	Wax gourd	carwgoB0323