Cp4.1LG03g07890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g07890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMyb transcription factor
LocationCp4.1LG03 : 3126292 .. 3128734 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTACCCTGGCTGGTGTTAAAGCTCCTCTTCGCATGAAGTTCTTGAGTTCCTCAGCCAATACTGAGGTCGATGTCTTCTAGTAAGGCTAATAGTCTCTAGACCGTCGTATCGATTGGCCGAAAGGACTTATACGCCATAGTCTTTCTTTTCCTCCCAACCCACGAGCTAGAAATGGCATTAACCAAAATTTAGAATAGGAATTAACTCCATAAATGAAAGAATCACTCACTTTGAGCCTTGAATAGAATGCACTTGGGGCCAACCTCATGAGAGAGAGAGAGGAAAAGAATCATGCAGTAATGGTTCATTGGGAGCTCTGTTTCCATGCATTTCATGCCTTAAAAGATCACTTCTTAAACATCCACTTTTCCCCTCTTAAAAAATGACTAAAACTATAGCTTCCAATTGCATCACCATTACATAGTAAAGCTTTTACCCTCAAATCTCCCTCTCATCACCATTGTTGCAGGATGGGGAAGCCTCCTTGCTGTGATAAGTCCAATGTTAAAAGAGGGCTTTGGACTGCAGAGGAAGATGCCAAAATCCTTGCTTATGTTTCCAACCATGGAGTTGGGAATTGGACTCTGGTTCCCAAGAAAGCAGGTCTCTCTCTGTTCTTTCTCTTGCTTTGTTTCTTCTGTTGTCTAACAATGAAGGAATTTGAATGAATATGGCTCGTTTTTCAAAGGGCTGAATCGATGTGGGAAGAGTTGTAGACTGAGATGGACTAATTACCTTAGGCCTGATCTCAGGCACGACAGCTTCACTCCTCAAGAAGAAGACCTCATTATCAAACTCCATCAAGCCATTGGAAGCAGGTCCTTTCTCACTTCCCTTTCGTTTTCGGATATTTGACTTACGGGTTAGATTTAAATAGTCTAAGCTTTTGAGGTCGATTTTGTTGAGAATTGTTGGGAGATGAGAGAAACCAAAAGCAAAGCCATAAGAGCTTATACTCAAAGTAGACAATAACATGCTATTGTGGAACTCCGTGATTCCTAACATAGTATCAGAGTCATGCCCTTAACTTACGAACAAAGATGTTGGGACCCTCGAAAGTGTAATCAAAAGTGACTCAAGTATCGAACAAAGGATGTACTTTGTTCGAAGGCTCCATAGATCTCAAGGGAGGCTCTATGGTGTACTTTGTTCGAGGAGATGATTATTGAGAATTGTTGGGAGGGAGTCCCACATTAGCTAATCAAGGGGATGATCATGAGTTTAGAAGTAAGGAAAACTAACAGCAAACCCATGAGAGCTTATACTCATAGTGTACAATATCATACTATTGTGGAGATCCGTGATTCCTAACATGATATCAAAGTCATGCCCTTAACTTAGCCATGTCAATAGAATCCTCAAGTGTCAAATAAAGGGTGTATTTTGTTCGAAGGTTCTATTGGGGAGACTATAGTACTTTGTTTGTGGAGATGATTATTGAGAATTGTTAGGAGGGAGTCCCACGTTAGCTAATAAGGGGATGATCACATCTCCATTGGTACGAGGCCTTTTGGGGAACCAAAAGCAAAGCCACGAGAGCTTATGCTCAAAATGGACAATATATCATACCATTATAGAGAGTCATGGTTCCTAACCGACTTTGCGCTCGTATCTACATGACGTTCACATTTAACTCTACTCCAAATAGTCATTATACTAATGCATATAAGGCTCAAGGATCTTTCTCGACACACAAACCAAACATAGATTATAAATCAGCTCAAGACTTTCCAACTCAAGGAACATCCTCGTTATCTACGAAACAAAAATGGTGATCCAATTCAAGCTATATAAGGGAAGAAACATTACCATGTTATTGAGTACTTGAAGATGAATAACACACAATCTCTGTCTCTGTCTCCATTGATGTAGTGCAGGTGGTCTGTAATAGCAAAGCAGCTGCCAGGAAGAACAGACAACGATGTGAAGAATTACTGGAACACAAAGCTGAGAAAAAAGCTTTCAAAAATGGGAATAGATCCAATAACTCACAAGCCCTTTTCTCAGATCCTGTTTGACTATGGATCCATAAGCAGCCTCCCAGCCACGCCCAAACCCCCCTTGATAGGCCCCTTCAACAAAACATTGATCCCAACAACAACAACAATGGCCAAAACCCAGCAACCATTTTCTTCAGGGGCCTATTTGGGACAGCAATTTCAGTTTCAGACCCCAAAGAAACCACAGTTTTTCAATGAACAACCGACAACCTCGTCTTGTTCATCGTCCTCCATCAATGGCGGTGAAGGCTTGTTCCATTTTGCTGCTTCTTCGTCGTGTTGTTCGGAGCAGCGTAATGGGATTGAGCCCTTTTCGCAGCAATGTGAAGGGTCTTCTTCCGATTCGTCTTTCGATTCGTTTGTGGATGCCTTGTTGGTGCAGGATTGTGAGATTAAGGGCTCGTTTCCGGAGATTTTGGATGGGTGTTTTGATTATTGA

mRNA sequence

ATGTTTACCCTGGCTGGTGTTAAAGCTCCTCTTCGCATGAAGTTCTTGAGTTCCTCAGCCAATACTGAGCTTCCAATTGCATCACCATTACATAGTAAAGCTTTTACCCTCAAATCTCCCTCTCATCACCATTGTTGCAGGATGGGGAAGCCTCCTTGCTGTGATAAGTCCAATGTTAAAAGAGGGCTTTGGACTGCAGAGGAAGATGCCAAAATCCTTGCTTATGTTTCCAACCATGGAGTTGGGAATTGGACTCTGGTTCCCAAGAAAGCAGGCCCCTTCAACAAAACATTGATCCCAACAACAACAACAATGGCCAAAACCCAGCAACCATTTTCTTCAGGGGCCTATTTGGGACAGCAATTTCAGTTTCAGACCCCAAAGAAACCACAGTTTTTCAATGAACAACCGACAACCTCGTCTTGTTCATCGTCCTCCATCAATGGCGGTGAAGGCTTGTTCCATTTTGCTGCTTCTTCGTCGTGTTGTTCGGAGCAGCGTAATGGGATTGAGCCCTTTTCGCAGCAATGTGAAGGGTCTTCTTCCGATTCGTCTTTCGATTCGTTTGTGGATGCCTTGTTGGTGCAGGATTGTGAGATTAAGGGCTCGTTTCCGGAGATTTTGGATGGGTGTTTTGATTATTGA

Coding sequence (CDS)

ATGTTTACCCTGGCTGGTGTTAAAGCTCCTCTTCGCATGAAGTTCTTGAGTTCCTCAGCCAATACTGAGCTTCCAATTGCATCACCATTACATAGTAAAGCTTTTACCCTCAAATCTCCCTCTCATCACCATTGTTGCAGGATGGGGAAGCCTCCTTGCTGTGATAAGTCCAATGTTAAAAGAGGGCTTTGGACTGCAGAGGAAGATGCCAAAATCCTTGCTTATGTTTCCAACCATGGAGTTGGGAATTGGACTCTGGTTCCCAAGAAAGCAGGCCCCTTCAACAAAACATTGATCCCAACAACAACAACAATGGCCAAAACCCAGCAACCATTTTCTTCAGGGGCCTATTTGGGACAGCAATTTCAGTTTCAGACCCCAAAGAAACCACAGTTTTTCAATGAACAACCGACAACCTCGTCTTGTTCATCGTCCTCCATCAATGGCGGTGAAGGCTTGTTCCATTTTGCTGCTTCTTCGTCGTGTTGTTCGGAGCAGCGTAATGGGATTGAGCCCTTTTCGCAGCAATGTGAAGGGTCTTCTTCCGATTCGTCTTTCGATTCGTTTGTGGATGCCTTGTTGGTGCAGGATTGTGAGATTAAGGGCTCGTTTCCGGAGATTTTGGATGGGTGTTTTGATTATTGA

Protein sequence

MFTLAGVKAPLRMKFLSSSANTELPIASPLHSKAFTLKSPSHHHCCRMGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAGPFNKTLIPTTTTMAKTQQPFSSGAYLGQQFQFQTPKKPQFFNEQPTTSSCSSSSINGGEGLFHFAASSSCCSEQRNGIEPFSQQCEGSSSDSSFDSFVDALLVQDCEIKGSFPEILDGCFDY
Homology
[Close]
BLAST of Cp4.1LG03g07890 vs. Swiss-Prot
Match: MYB35_ARATH (Transcription factor MYB35 OS=Arabidopsis thaliana GN=MYB35 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-18
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+PPCCDKSNVK+GLWT EEDAKILAYV+ HGVGNW+L+PKKAG
Sbjct: 1  MGRPPCCDKSNVKKGLWTEEEDAKILAYVAIHGVGNWSLIPKKAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. Swiss-Prot
Match: MYB80_ORYSJ (Transcription factor MYB80 OS=Oryza sativa subsp. japonica GN=MYB80 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+ PCC+K NVKRG WT EED K+L+Y++ +G  NW L+PK AG
Sbjct: 1  MGRVPCCEKDNVKRGQWTPEEDNKLLSYITQYGTRNWRLIPKNAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. Swiss-Prot
Match: MYB80_ARATH (Transcription factor MYB80 OS=Arabidopsis thaliana GN=MYB80 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+ PCC+K NVKRG WT EED K+ +Y++ HG  NW L+PK AG
Sbjct: 1  MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTRNWRLIPKNAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-10
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+PPCCDK  VK+G WT EED  +++Y+  HG GNW  +P   G
Sbjct: 1  MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-10
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGV-GNWTLVPKKAG 93
          MG+ PCCDK+NVK+G W+ EEDAK+ +Y+ N G  GNW  +P+K G
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIG 46

[Close]
BLAST of Cp4.1LG03g07890 vs. TrEMBL
Match: A0A0A0LC71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G828990 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG
Sbjct: 1  MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. TrEMBL
Match: A0A067LL30_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_09689 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+PPCCDKSNVKRGLWTAEEDAKILAYVSNHG+GNWTLVPKKAG
Sbjct: 1  MGRPPCCDKSNVKRGLWTAEEDAKILAYVSNHGIGNWTLVPKKAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. TrEMBL
Match: A0A0S3T8L1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G031600 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 49/80 (61.25%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 28  SPLHSKAFTLKSPSHHHCC---------------RMGKPPCCDKSNVKRGLWTAEEDAKI 87
           SP H    TL+   HHH                 +MG+PPCCDKSNVKRGLWT EEDAKI
Sbjct: 27  SPFHHFKVTLQCILHHHYIIHSAFLLFLLSLFSQKMGRPPCCDKSNVKRGLWTPEEDAKI 86

Query: 88  LAYVSNHGVGNWTLVPKKAG 93
           LAYV+NHG GNWTLVPKKAG
Sbjct: 87  LAYVANHGTGNWTLVPKKAG 106

[Close]
BLAST of Cp4.1LG03g07890 vs. TrEMBL
Match: B9RUJ1_RICCO (R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0853240 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.4e-18
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+PPCCDKSNVKRGLW+AEEDAKILAYVSNHG+GNWTLVPKKAG
Sbjct: 1  MGRPPCCDKSNVKRGLWSAEEDAKILAYVSNHGIGNWTLVPKKAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. TrEMBL
Match: A0A151RUI0_CAJCA (Myb-related protein Zm38 OS=Cajanus cajan GN=KK1_032238 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.8e-18
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+PPCCDKSNVKRGLWT EEDAKILAYVSNHG GNWTLVPKKAG
Sbjct: 1  MGRPPCCDKSNVKRGLWTPEEDAKILAYVSNHGTGNWTLVPKKAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. TAIR10
Match: AT3G28470.1 (AT3G28470.1 Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-19
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+PPCCDKSNVK+GLWT EEDAKILAYV+ HGVGNW+L+PKKAG
Sbjct: 1  MGRPPCCDKSNVKKGLWTEEEDAKILAYVAIHGVGNWSLIPKKAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. TAIR10
Match: AT5G56110.1 (AT5G56110.1 myb domain protein 103)

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-13
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+ PCC+K NVKRG WT EED K+ +Y++ HG  NW L+PK AG
Sbjct: 1  MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTRNWRLIPKNAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. TAIR10
Match: AT4G28110.1 (AT4G28110.1 myb domain protein 41)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+ PCCDK+ VK+G WTAEED K++ Y+  HG GNW  +PK AG
Sbjct: 1  MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. TAIR10
Match: AT5G15310.1 (AT5G15310.1 myb domain protein 16)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-12
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+ PCCDK  +K+G WT EED K+LAY+  HG G+W  +P+KAG
Sbjct: 1  MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. TAIR10
Match: AT1G08810.1 (AT1G08810.1 myb domain protein 60)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-11
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+PPCCDK  +K+G WT EED  +++Y+  HG GNW  VP   G
Sbjct: 1  MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. NCBI nr
Match: gi|659085492|ref|XP_008443447.1| (PREDICTED: myb-related protein Zm38 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 4.3e-43
Identity = 98/122 (80.33%), Postives = 101/122 (82.79%), Query Frame = 1 

Query: 93  PFNKTLIPTTTTMAKTQQPFSSGAYLGQQFQFQTPKKPQFFNEQPTTSSCSSSSINGGEG 152
           PFNKTL PTTT MAKTQQPFSSG  LGQQFQFQTPKKP    EQPT+SSCSSSSINGGE 
Sbjct: 152 PFNKTLTPTTT-MAKTQQPFSSGTNLGQQFQFQTPKKPYILKEQPTSSSCSSSSINGGET 211

Query: 153 LFHFAASSSCCSEQRNGIEPFSQQCEGSSSDSSFDSFVDALLVQDCEIKGSFPEILDGCF 212
           +FH A S    SEQ NGIEP  Q+CEGSSSDSSFDSFVDALL QD EIKGSFPEILD CF
Sbjct: 212 VFHLAGS----SEQSNGIEPILQRCEGSSSDSSFDSFVDALLEQDFEIKGSFPEILDECF 268

Query: 213 DY 215
           DY
Sbjct: 272 DY 268

[Close]
BLAST of Cp4.1LG03g07890 vs. NCBI nr
Match: gi|449459506|ref|XP_004147487.1| (PREDICTED: myb-related protein Zm38 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 91/123 (73.98%), Postives = 98/123 (79.67%), Query Frame = 1 

Query: 92  GPFNKTLIPTTTTMAKTQQPFSSGAYLGQQFQFQTPKKPQFFNEQPTTSSCSSSSINGGE 151
           GPFNKTL P TTTMAK+QQPFSSG  +G+QFQFQTPKKP    EQPT+SSCSSSSING E
Sbjct: 151 GPFNKTLTP-TTTMAKSQQPFSSGTNMGEQFQFQTPKKPYILKEQPTSSSCSSSSINGSE 210

Query: 152 GLFHFAASSSCCSEQRNGIEPFSQQCEGSSSDSSFDSFVDALLVQDCEIKGSFPEILDGC 211
            +FH  +SS       NGIEP  Q+CEGSSSD SFDSFVDALL QD EIKGSFPEILD C
Sbjct: 211 TMFHLGSSSG----HSNGIEPNLQRCEGSSSDPSFDSFVDALLEQDFEIKGSFPEILDEC 268

Query: 212 FDY 215
           FDY
Sbjct: 271 FDY 268

[Close]
BLAST of Cp4.1LG03g07890 vs. NCBI nr
Match: gi|700204477|gb|KGN59610.1| (hypothetical protein Csa_3G828990 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-19
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG
Sbjct: 1  MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. NCBI nr
Match: gi|802545234|ref|XP_012083639.1| (PREDICTED: transcription repressor MYB6 [Jatropha curcas])

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 

Query: 48 MGKPPCCDKSNVKRGLWTAEEDAKILAYVSNHGVGNWTLVPKKAG 93
          MG+PPCCDKSNVKRGLWTAEEDAKILAYVSNHG+GNWTLVPKKAG
Sbjct: 1  MGRPPCCDKSNVKRGLWTAEEDAKILAYVSNHGIGNWTLVPKKAG 45

[Close]
BLAST of Cp4.1LG03g07890 vs. NCBI nr
Match: gi|965615999|dbj|BAU01149.1| (hypothetical protein VIGAN_11031600 [Vigna angularis var. angularis])

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 49/80 (61.25%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 28  SPLHSKAFTLKSPSHHHCC---------------RMGKPPCCDKSNVKRGLWTAEEDAKI 87
           SP H    TL+   HHH                 +MG+PPCCDKSNVKRGLWT EEDAKI
Sbjct: 27  SPFHHFKVTLQCILHHHYIIHSAFLLFLLSLFSQKMGRPPCCDKSNVKRGLWTPEEDAKI 86

Query: 88  LAYVSNHGVGNWTLVPKKAG 93
           LAYV+NHG GNWTLVPKKAG
Sbjct: 87  LAYVANHGTGNWTLVPKKAG 106

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g07890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYB35_ARATH6.3e-1884.44Transcription factor MYB35 OS=Arabidopsis thaliana GN=MYB35 PE=2 SV=1[more]
MYB80_ORYSJ1.2e-1160.00Transcription factor MYB80 OS=Oryza sativa subsp. japonica GN=MYB80 PE=2 SV=2[more]
MYB80_ARATH1.2e-1160.00Transcription factor MYB80 OS=Arabidopsis thaliana GN=MYB80 PE=1 SV=1[more]
MYB06_ANTMA2.8e-1053.33Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1[more]
RAX3_ARATH6.3e-1056.52Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1[more]
BLAST of Cp4.1LG03g07890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC71_CUCSA4.0e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G828990 PE=4 SV=1[more]
A0A067LL30_JATCU1.2e-1895.56MYB family protein OS=Jatropha curcas GN=JCGZ_09689 PE=4 SV=1[more]
A0A0S3T8L1_PHAAN1.5e-1861.25Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G031600 PE=... [more]
B9RUJ1_RICCO3.4e-1893.33R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0853240 PE=4... [more]
A0A151RUI0_CAJCA9.8e-1893.33Myb-related protein Zm38 OS=Cajanus cajan GN=KK1_032238 PE=4 SV=1[more]
BLAST of Cp4.1LG03g07890 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G28470.13.6e-1984.44 Duplicated homeodomain-like superfamily protein[more]
AT5G56110.16.5e-1360.00 myb domain protein 103[more]
AT4G28110.11.4e-1260.00 myb domain protein 41[more]
AT5G15310.15.5e-1257.78 myb domain protein 16[more]
AT1G08810.12.7e-1153.33 myb domain protein 60[more]
BLAST of Cp4.1LG03g07890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085492|ref|XP_008443447.1|4.3e-4380.33PREDICTED: myb-related protein Zm38 [Cucumis melo][more]
gi|449459506|ref|XP_004147487.1|1.0e-3973.98PREDICTED: myb-related protein Zm38 [Cucumis sativus][more]
gi|700204477|gb|KGN59610.1|5.7e-19100.00hypothetical protein Csa_3G828990 [Cucumis sativus][more]
gi|802545234|ref|XP_012083639.1|1.7e-1895.56PREDICTED: transcription repressor MYB6 [Jatropha curcas][more]
gi|965615999|dbj|BAU01149.1|2.2e-1861.25hypothetical protein VIGAN_11031600 [Vigna angularis var. angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048658 anther wall tapetum development
biological_process GO:0055046 microgametogenesis
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g07890.1Cp4.1LG03g07890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 61..97
score: 1.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 52..91
score: 5.3
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 55..97
score: 1.0
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 56..102
score: 12
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 32..92
score: 3.0
NoneNo IPR availablePANTHERPTHR10641:SF664SUBFAMILY NOT NAMEDcoord: 32..92
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g07890CmaCh14G006170Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g07890CmoCh14G006260Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g07890Cla017041Watermelon (97103) v1cpewmB597
Cp4.1LG03g07890MELO3C009907Melon (DHL92) v3.5.1cpemeB572
Cp4.1LG03g07890ClCG10G014690Watermelon (Charleston Gray)cpewcgB546
Cp4.1LG03g07890CSPI03G39410Wild cucumber (PI 183967)cpecpiB599
Cp4.1LG03g07890Lsi03G014430Bottle gourd (USVL1VR-Ls)cpelsiB503
Cp4.1LG03g07890MELO3C017143.2Melon (DHL92) v3.6.1cpemedB670
Cp4.1LG03g07890MELO3C009907.2Melon (DHL92) v3.6.1cpemedB679
Cp4.1LG03g07890CsaV3_3G041870Cucumber (Chinese Long) v3cpecucB0747
Cp4.1LG03g07890CsaV3_1G001990Cucumber (Chinese Long) v3cpecucB0740
Cp4.1LG03g07890Bhi02G000279Wax gourdcpewgoB0824
Cp4.1LG03g07890Bhi11G002544Wax gourdcpewgoB0743
Cp4.1LG03g07890CsGy1G001980Cucumber (Gy14) v2cgybcpeB108
Cp4.1LG03g07890Carg10389Silver-seed gourdcarcpeB0512
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g07890Silver-seed gourdcarcpeB0301
Cp4.1LG03g07890Silver-seed gourdcarcpeB0378
Cp4.1LG03g07890Silver-seed gourdcarcpeB0613
Cp4.1LG03g07890Cucumber (Chinese Long) v3cpecucB0738
Cp4.1LG03g07890Cucurbita pepo (Zucchini)cpecpeB218
Cp4.1LG03g07890Cucurbita pepo (Zucchini)cpecpeB475
Cp4.1LG03g07890Cucumber (Gy14) v1cgycpeB0204
Cp4.1LG03g07890Cucumber (Gy14) v1cgycpeB0888
Cp4.1LG03g07890Cucurbita maxima (Rimu)cmacpeB146
Cp4.1LG03g07890Cucurbita moschata (Rifu)cmocpeB123
Cp4.1LG03g07890Wild cucumber (PI 183967)cpecpiB596
Cp4.1LG03g07890Cucumber (Chinese Long) v2cpecuB595
Cp4.1LG03g07890Cucumber (Chinese Long) v2cpecuB597
Cp4.1LG03g07890Cucumber (Gy14) v2cgybcpeB105
Cp4.1LG03g07890Cucumber (Gy14) v2cgybcpeB395