Cp4.1LG03g06750 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g06750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 3877538 .. 3879490 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTGCAACAAAGAGGATAGAGACCCACCACGTTCAGTAAACAAAGGCAGACAGCCGATTCGCTCATCATTCATATCGTCTTCTTCTTCCTCATCTCCATTTTTCTCCATTTCCGAAGAATTATGAATTACCCCTACGGCTACCAACATCCTCCGCCGGAAACCTACCCTCCTCCCGGTGAGATCCGCTTCTTCTTCTTCTTCTGATTCTGATTTTCCATTTTCATTTCATCTCATTTTTTTCTTCTCTTCCATAGGGTACCGTCCGCCGCAGCCTGGATATCCCGGCCATCAGCCGCTGCCTCCGCCGCCACATCAAGGATATCAAGGTTATTTCTACGATGGATATTCTCCATCGGCGCCGCCTCCTCCTCCTCCGCCGGGCCCTCCTCCACCGCCTTATTGTCATCAGCACTATCATTACGATGATCGAAATGACTGTTCCTCCTTCCTTCATGGATGGTACGTTTTCCTCCATTTCTTCGATTCTTGTTGACACGATTTTGATTTGTTTGCTTGTCTTCGTGATCTCGTTGATTGATTGATCGATTGATTCTGTGTTGTGAAAATTGATTGTTCTTGTGCAATGAATGTTTTGTCGATTTATTTGGATTTGGAAATCAGGAATTCAATTTGGATTTGGATTTTCAATGAATGTTATGATCAAGCTGTTTAAACATCGAAGGCGTTTCTTGATCTTCTTTCAATTTGAATTACATTTTAAAAATCTTGCTCAATGTAGAATTGTCAGCCACATTGTTCCATCCGTCTCGAACAATTTCATCTCGCAATAGTCTCGAGTCTGCTTGATAATTATTTGGTTAAAATCGTGCTTATTTAAATAAACATTTGAGTTCTCAAAACTTGACTTAGAATTTTGAAAACACTCGATACAAGGAGCTATCTCGAACCAATAACAATCATCTTTGTTCTTGTTATCATGAACTAAGCAGAATTTTTCAATTGGTGCACAGATAATCTGATGCTTCCCCATTAATGCTACCTTATGATCCAATCCTTTCTTCCTCTAATTATGTTATATAGCTTTGGTTAAACTGTTGAATTGGACTGTCTCTTTTCATGTTTTGCTCTGTTTTTTTCTCATCCATGTTCGTCGCTGTTTTAACGTTCTTGTGCGTGAGATAGCGAAACAAGCTCGATCTCGTTCGACATGTTGTTTTCTTGTTTGATCCCTTTTCTTATTGGGGACTTGCCTTCTTGCAATTGGTTATGTTTTAGCATTTACCTAAGCTTATGCCATTTTCCTCCTATGGATGCTGAAAGATTAGGGTCGAACGAGTACGTAAACTAGTAATCTTGGACACCAGAGAAATCGAATGTCGAATGTCTAAGACGTGTGGAATAACCGTGGCCACAAGTACATCATAAGATCCTTCCTGGGGCTTCTTTTAGCTTTTAGTACCAAATATGGATTCAAGGGAGAATATCTTTTGATTATGAGTGTAACCTTAAACTTGTTGTCTTGTGCAGCTTAGCTACACTGTGTTGTTGTTGTATGTTGGAGGAGTGTTTGGCCTGCTTCCGATAGACCGTGTGTTTTTTTCGGTCTCTTCGGCCGAGCTGTGTTCATGTCTCTTCGGCCGAGCTGTGTTTCGCATCACTTGGAATAAGAATTGCAGTTTCTGGTTTGTGTGATCGTAAACTATCTGTATTGTTTGTGATATCTAAATGCTGTTATTTACTTATATATATATATATATATACCTGAACAAATAATTGTTAATACTTGTAGACTTGGAATCCTTATTTATTGTTGTCATCCAGATTCAACTTTCTTTGAGATTTTTATGCTAAGTTTCTGTGGAGAATATGCTATTTGGAACTTGGTTTAATCCTCCATCCTTTTTTTAATTTTATTTTTGTTCCTTTTTTGGTATCCAAAGAACCTAGACGATAAATGGGAATGTGAGGTTGCATCGGAAGAATCTCGGCC

mRNA sequence

AGTTGCAACAAAGAGGATAGAGACCCACCACGTTCAGTAAACAAAGGCAGACAGCCGATTCGCTCATCATTCATATCGTCTTCTTCTTCCTCATCTCCATTTTTCTCCATTTCCGAAGAATTATGAATTACCCCTACGGCTACCAACATCCTCCGCCGGAAACCTACCCTCCTCCCGGGTACCGTCCGCCGCAGCCTGGATATCCCGGCCATCAGCCGCTGCCTCCGCCGCCACATCAAGGATATCAAGGTTATTTCTACGATGGATATTCTCCATCGGCGCCGCCTCCTCCTCCTCCGCCGGGCCCTCCTCCACCGCCTTATTGTCATCAGCACTATCATTACGATGATCGAAATGACTGTTCCTCCTTCCTTCATGGATGCATTTACCTAAGCTTATGCCATTTTCCTCCTATGGATGCTGAAAGATTAGGGTCGAACGAGTACCTTAGCTACACTGTGTTGTTGTTGTATGTTGGAGGAGTGTTTGGCCTGCTTCCGATAGACCGTGTGTTTTTTTCGGTCTCTTCGGCCGAGCTGTGTTCATGTCTCTTCGGCCGAGCTGTGTTTCGCATCACTTGGAATAAGAATTGCAGTTTCTGGTTTGTGTGATCGTAAACTATCTGTATTGTTTGTGATATCTAAATGCTGTTATTTACTTATATATATATATATATATACCTGAACAAATAATTGTTAATACTTGTAGACTTGGAATCCTTATTTATTGTTGTCATCCAGATTCAACTTTCTTTGAGATTTTTATGCTAAGTTTCTGTGGAGAATATGCTATTTGGAACTTGGTTTAATCCTCCATCCTTTTTTTAATTTTATTTTTGTTCCTTTTTTGGTATCCAAAGAACCTAGACGATAAATGGGAATGTGAGGTTGCATCGGAAGAATCTCGGCC

Coding sequence (CDS)

ATGAATTACCCCTACGGCTACCAACATCCTCCGCCGGAAACCTACCCTCCTCCCGGGTACCGTCCGCCGCAGCCTGGATATCCCGGCCATCAGCCGCTGCCTCCGCCGCCACATCAAGGATATCAAGGTTATTTCTACGATGGATATTCTCCATCGGCGCCGCCTCCTCCTCCTCCGCCGGGCCCTCCTCCACCGCCTTATTGTCATCAGCACTATCATTACGATGATCGAAATGACTGTTCCTCCTTCCTTCATGGATGCATTTACCTAAGCTTATGCCATTTTCCTCCTATGGATGCTGAAAGATTAGGGTCGAACGAGTACCTTAGCTACACTGTGTTGTTGTTGTATGTTGGAGGAGTGTTTGGCCTGCTTCCGATAGACCGTGTGTTTTTTTCGGTCTCTTCGGCCGAGCTGTGTTCATGTCTCTTCGGCCGAGCTGTGTTTCGCATCACTTGGAATAAGAATTGCAGTTTCTGGTTTGTGTGA

Protein sequence

MNYPYGYQHPPPETYPPPGYRPPQPGYPGHQPLPPPPHQGYQGYFYDGYSPSAPPPPPPPGPPPPPYCHQHYHYDDRNDCSSFLHGCIYLSLCHFPPMDAERLGSNEYLSYTVLLLYVGGVFGLLPIDRVFFSVSSAELCSCLFGRAVFRITWNKNCSFWFV
Homology
[Close]
BLAST of Cp4.1LG03g06750 vs. TrEMBL
Match: A0A0A0L8F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597340 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.9e-35
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 1  MNYPYGYQHPPPETYPPPGYRPPQPGYPGHQP-LPPPPHQGYQGYFYDGYSPSAPPPPPP 60
          M+YPYGY HPPPETYPPPGY PPQPGYPG+QP  PPPPHQGYQGYFYDGY PSAPPPP  
Sbjct: 1  MSYPYGYNHPPPETYPPPGYPPPQPGYPGYQPHPPPPPHQGYQGYFYDGYQPSAPPPP-- 60

Query: 61 PGPPPPPYCHQHYHYDDRNDCSSFLHGCIYLSLC 94
            PPPPP  HQHYHYDDRNDCSSFLHGC+    C
Sbjct: 61 --PPPPPCHHQHYHYDDRNDCSSFLHGCLATLCC 90

[Close]
BLAST of Cp4.1LG03g06750 vs. TrEMBL
Match: A0A061EES5_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_017307 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.7e-10
Identity = 51/121 (42.15%), Postives = 61/121 (50.41%), Query Frame = 1 

Query: 7   YQHPPPETYPPPGYR-----PPQPGYPGHQPLPPP------------------------- 66
           YQ  P + YPPPGY      PP PGYP   P PP                          
Sbjct: 52  YQRVPQDPYPPPGYASPYSAPPPPGYPSAPPRPPTLPPYEGYPPPPLPPGYPPYPQRPGQ 111

Query: 67  PHQGYQGYFYDGYSPSAPPPPPPPGPPPPPYCH--QHYHYDDRND--CSSFLHGCIYLSL 94
           P++GYQGYF +GY P  PPPPPPPG P   +CH  +H+HY D++D  C SFL GC+    
Sbjct: 112 PYEGYQGYFAEGYPP--PPPPPPPGHPQYQHCHHYEHHHYQDQSDAGCFSFLQGCLAALC 170

[Close]
BLAST of Cp4.1LG03g06750 vs. TrEMBL
Match: A0A061EKS7_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_017307 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 1 

Query: 10  PPPETYPPPGYRPPQPGYPGHQPLPPPPHQGYQGYFYDGYSPSAPPPPPPPGPPPPPYCH 69
           PP E YPPP   P  PGYP +   P  P++GYQGYF +GY P  PPPPPPPG P   +CH
Sbjct: 90  PPYEGYPPP---PLPPGYPPYPQRPGQPYEGYQGYFAEGYPP--PPPPPPPGHPQYQHCH 149

Query: 70  --QHYHYDDRND--CSSFLHGCIYLSLC 94
             +H+HY D++D  C SFL GC+    C
Sbjct: 150 HYEHHHYQDQSDAGCFSFLQGCLAALCC 172

[Close]
BLAST of Cp4.1LG03g06750 vs. TrEMBL
Match: D7SVJ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01340 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-09
Identity = 46/97 (47.42%), Postives = 54/97 (55.67%), Query Frame = 1 

Query: 5   YGYQHPPPETY-----PPPGYRPPQPGYPGHQPLPP---PPHQGYQGYFYDGYSPSAPPP 64
           Y   +PPP  Y     PPP   PP PGYPG+ P PP   PP+QGYQGYF +GY       
Sbjct: 37  YSVPYPPPSGYPSAPPPPPPGCPPPPGYPGYPPPPPPPGPPYQGYQGYFNEGY------- 96

Query: 65  PPPPGPPPPPYCHQHYHYDDRNDCSSFLHGCIYLSLC 94
           PPPP PP     +Q Y Y D++  SSFL GC+    C
Sbjct: 97  PPPPPPPQQYQQYQQYQYQDQSGPSSFLPGCLAALCC 126

[Close]
BLAST of Cp4.1LG03g06750 vs. TrEMBL
Match: A0A0B0N9F1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11774 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 49/112 (43.75%), Postives = 61/112 (54.46%), Query Frame = 1 

Query: 7   YQHPPPETYPPPGYRPPQP-----GYP------GHQPLPPP-----------PHQGYQGY 66
           YQ  P + YPPPGY  P P     GYP      G+ P PPP           P++GYQGY
Sbjct: 3   YQRVPQDPYPPPGYASPYPPPPPSGYPSAPPYEGYPPPPPPGYPPYPQPQRQPYEGYQGY 62

Query: 67  FYDGYSPSAPPPPPPPGPPPPPYCH-QHYHYDDRND--CSSFLHGCIYLSLC 94
           F +GY    PPPPPPPG P   +CH +H+H+ + +D  C SFL GC+    C
Sbjct: 63  FAEGY---PPPPPPPPGHPQYHHCHYEHHHHHNHSDDGCFSFLKGCLAALCC 111

[Close]
BLAST of Cp4.1LG03g06750 vs. NCBI nr
Match: gi|659098160|ref|XP_008450006.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-37
Identity = 77/93 (82.80%), Postives = 79/93 (84.95%), Query Frame = 1 

Query: 1  MNYPYGYQHPPPETYPPPGYRPPQPGYPGHQPLPPPPHQGYQGYFYDGYSPSAPPPPPPP 60
          M+Y YGY HPPPETYPPPGY PPQPGYPGHQP PPPPHQGYQGYFYDGY PSAPPPP   
Sbjct: 1  MSYSYGYNHPPPETYPPPGYPPPQPGYPGHQPPPPPPHQGYQGYFYDGYQPSAPPPP--- 60

Query: 61 GPPPPPYCHQHYHYDDRNDCSSFLHGCIYLSLC 94
           PPPPPY HQHYHYDDRNDCSSFLHGC+    C
Sbjct: 61 -PPPPPYHHQHYHYDDRNDCSSFLHGCLATLCC 89

[Close]
BLAST of Cp4.1LG03g06750 vs. NCBI nr
Match: gi|449455918|ref|XP_004145697.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 5.6e-35
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 1  MNYPYGYQHPPPETYPPPGYRPPQPGYPGHQP-LPPPPHQGYQGYFYDGYSPSAPPPPPP 60
          M+YPYGY HPPPETYPPPGY PPQPGYPG+QP  PPPPHQGYQGYFYDGY PSAPPPP  
Sbjct: 1  MSYPYGYNHPPPETYPPPGYPPPQPGYPGYQPHPPPPPHQGYQGYFYDGYQPSAPPPP-- 60

Query: 61 PGPPPPPYCHQHYHYDDRNDCSSFLHGCIYLSLC 94
            PPPPP  HQHYHYDDRNDCSSFLHGC+    C
Sbjct: 61 --PPPPPCHHQHYHYDDRNDCSSFLHGCLATLCC 90

[Close]
BLAST of Cp4.1LG03g06750 vs. NCBI nr
Match: gi|1009152145|ref|XP_015893935.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Ziziphus jujuba])

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17
Identity = 56/94 (59.57%), Postives = 64/94 (68.09%), Query Frame = 1 

Query: 5   YGYQHPPPETYPPP-GYRPPQPGYPGHQP--LPPPPHQGYQGYFYDGYSPSAPPPPPPPG 64
           YG  +PPP  YPPP G  PP PGYPG+ P   PPPP++GYQGYF +GY    PPPPPPPG
Sbjct: 18  YGSPYPPPPGYPPPPGPAPPPPGYPGYPPPPRPPPPYEGYQGYFAEGYP---PPPPPPPG 77

Query: 65  PPPPPYCHQHY--HYDDRNDCSSFLHGCIYLSLC 94
           PPPP + H HY  H DD + CSSFL GC+    C
Sbjct: 78  PPPPQFQHYHYEHHRDDDDGCSSFLRGCLAALCC 108

[Close]
BLAST of Cp4.1LG03g06750 vs. NCBI nr
Match: gi|590647736|ref|XP_007031981.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 51/121 (42.15%), Postives = 61/121 (50.41%), Query Frame = 1 

Query: 7   YQHPPPETYPPPGYR-----PPQPGYPGHQPLPPP------------------------- 66
           YQ  P + YPPPGY      PP PGYP   P PP                          
Sbjct: 52  YQRVPQDPYPPPGYASPYSAPPPPGYPSAPPRPPTLPPYEGYPPPPLPPGYPPYPQRPGQ 111

Query: 67  PHQGYQGYFYDGYSPSAPPPPPPPGPPPPPYCH--QHYHYDDRND--CSSFLHGCIYLSL 94
           P++GYQGYF +GY P  PPPPPPPG P   +CH  +H+HY D++D  C SFL GC+    
Sbjct: 112 PYEGYQGYFAEGYPP--PPPPPPPGHPQYQHCHHYEHHHYQDQSDAGCFSFLQGCLAALC 170

[Close]
BLAST of Cp4.1LG03g06750 vs. NCBI nr
Match: gi|590647742|ref|XP_007031983.1| (Uncharacterized protein isoform 3 [Theobroma cacao])

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 1 

Query: 10  PPPETYPPPGYRPPQPGYPGHQPLPPPPHQGYQGYFYDGYSPSAPPPPPPPGPPPPPYCH 69
           PP E YPPP   P  PGYP +   P  P++GYQGYF +GY P  PPPPPPPG P   +CH
Sbjct: 90  PPYEGYPPP---PLPPGYPPYPQRPGQPYEGYQGYFAEGYPP--PPPPPPPGHPQYQHCH 149

Query: 70  --QHYHYDDRND--CSSFLHGCIYLSLC 94
             +H+HY D++D  C SFL GC+    C
Sbjct: 150 HYEHHHYQDQSDAGCFSFLQGCLAALCC 172

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g06750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g06750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8F9_CUCSA3.9e-3580.85Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597340 PE=4 SV=1[more]
A0A061EES5_THECC9.7e-1042.15Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_017307 PE=4 SV=1[more]
A0A061EKS7_THECC1.3e-0952.27Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_017307 PE=4 SV=1[more]
D7SVJ6_VITVI8.2e-0947.42Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01340 PE=4 SV=... [more]
A0A0B0N9F1_GOSAR2.4e-0843.75Uncharacterized protein OS=Gossypium arboreum GN=F383_11774 PE=4 SV=1[more]
BLAST of Cp4.1LG03g06750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g06750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098160|ref|XP_008450006.1|3.5e-3782.80PREDICTED: CYSTM1 family protein A-like [Cucumis melo][more]
gi|449455918|ref|XP_004145697.1|5.6e-3580.85PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Cucumis ... [more]
gi|1009152145|ref|XP_015893935.1|3.1e-1759.57PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Ziziphus... [more]
gi|590647736|ref|XP_007031981.1|1.4e-0942.15Uncharacterized protein isoform 1 [Theobroma cacao][more]
gi|590647742|ref|XP_007031983.1|1.8e-0952.27Uncharacterized protein isoform 3 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g06750.1Cp4.1LG03g06750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownSSF101447Formin homology 2 domain (FH2 domain)coord: 55..66
score: 8.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g06750CmaCh14G007540Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g06750CmoCh14G007680Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g06750Carg15528Silver-seed gourdcarcpeB0518
Cp4.1LG03g06750Carg09629Silver-seed gourdcarcpeB0613
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g06750Cucumber (Gy14) v2cgybcpeB402
Cp4.1LG03g06750Melon (DHL92) v3.6.1cpemedB691
Cp4.1LG03g06750Cucumber (Chinese Long) v3cpecucB0754
Cp4.1LG03g06750Wax gourdcpewgoB0794
Cp4.1LG03g06750Cucurbita pepo (Zucchini)cpecpeB477
Cp4.1LG03g06750Cucumber (Gy14) v1cgycpeB0416
Cp4.1LG03g06750Cucurbita maxima (Rimu)cmacpeB145
Cp4.1LG03g06750Cucurbita moschata (Rifu)cmocpeB124
Cp4.1LG03g06750Wild cucumber (PI 183967)cpecpiB608
Cp4.1LG03g06750Cucumber (Chinese Long) v2cpecuB605
Cp4.1LG03g06750Bottle gourd (USVL1VR-Ls)cpelsiB511
Cp4.1LG03g06750Watermelon (Charleston Gray)cpewcgB560
Cp4.1LG03g06750Watermelon (97103) v1cpewmB609
Cp4.1LG03g06750Melon (DHL92) v3.5.1cpemeB584