Cp4.1LG03g05180 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g05180
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMyb transcription factor
LocationCp4.1LG03 : 5071506 .. 5072557 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCAGAGCTTTGTTCCTATCTGTCAATGGCGGATCATGTGAAGAAAGGGCCGTGGACGGCGGACGAAGATTCCTTGCTTTCCCATTACGTTATTCTTCACGGCGAGGGCCACTGGAACTCCGTCGCTCATTCCACCGGTGAGGATTTTATTTCTAAGTTTTTCTTTTTCTTATAGTCTCGAGTGTCGAGGATTGTTGGGAGAGAGTCTTACATTAACTAATTTAGAGAATAATCATGGATCCATAAACAAGGAATACTATCTTCATTAATACGAGGTTTTTTGGAAAAATTCAAAACAAATTTCAAAAGTTTATGCTCAAAGCGGACAATATCTTCGTGATTTGTTACTTGGAGAACTATAATTAATTCTCGGTTTTGTTTTGTTTTAATTTAATTTAATTTAATTTACAGGGTTGAAGAGAACCGGGAAAAGCTGTCGCCTGAGGTGGCTGAATTATCTCCGCCCCAATGTCCGCCGTGGAAATATTACTCTTCAAGAACAGCTCCTCATTCTTCAACTTCACTCCCGTTGGGGCAATCGGTCAGTTTTTCTCCTTTTAATTCATATATATATATATATATAATTATGGGATTAAATGTATTGATGAGATTCTTTCTTGGGTTGGGATTGTTAATTTAGGTGGTCGAAAATAGCTCGATTTCTACCCGGAAGAACCGACAACGAGATAAAAAATTACTGGAGAACCCGAGTTCAAAAGCAAGCCAAACAGGTCAAGTGCGATGTTAATAGTCAGCGTTTTCATGACACAATGAGATTGGTTTGGATCCCCCGCCTGGTCGAGCGAATTGCAGCCACCTCTGGCCAATCTTTGCCGGCGTGCACCGAGACCTCCACGTCAACTCCTATAATTTCAGAATCTACATTGGATGACAATAGTGTCAATGTCGACGTGTCTGCATCGTGTTCAGACACATCAAATTGGGGAGACGGGTTTGAGGCAGGTTGGTGGGAAGGAGACGAAGTTGAGTCATCATTTGAGAGCTTGTGGACTGAGGAAAACATTCGTTTCTTACAACAACAGCTGTTTGAT

mRNA sequence

ACCAGAGCTTTGTTCCTATCTGTCAATGGCGGATCATGTGAAGAAAGGGCCGTGGACGGCGGACGAAGATTCCTTGCTTTCCCATTACGTTATTCTTCACGGCGAGGGCCACTGGAACTCCGGTTGAAGAGAACCGGGAAAAGCTGTCGCCTGAGGTGGCTGAATTATCTCCGCCCCAATGTCCGCCGTGGAAATATTACTCTTCAAGAACAGCTCCTCATTCTTCAACTTCACTCCCGTTGGGGCAATCGATTGGTTTGGATCCCCCGCCTGGTCGAGCGAATTGCAGCCACCTCTGGCCAATCTTTGCCGGCGTGCACCGAGACCTCCACGTCAACTCCTATAATTTCAGAATCTACATTGGATGACAATAGTGTCAATGTCGACGTGTCTGCATCGTGTTCAGACACATCAAATTGGGGAGACGGGTTTGAGGCAGGTTGGTGGGAAGGAGACGAAGTTGAGTCATCATTTGAGAGCTTGTGGACTGAGGAAAACATTCGTTTCTTACAACAACAGCTGTTTGAT

Coding sequence (CDS)

ACCAGAGCTTTGTTCCTATCTGTCAATGGCGGATCATGTGAAGAAAGGGCCGTGGACGGCGGACGAAGATTCCTTGCTTTCCCATTACGTTATTCTTCACGGCGAGGGCCACTGGAACTCCGGTTGAAGAGAACCGGGAAAAGCTGTCGCCTGAGGTGGCTGAATTATCTCCGCCCCAATGTCCGCCGTGGAAATATTACTCTTCAAGAACAGCTCCTCATTCTTCAACTTCACTCCCGTTGGGGCAATCGATTGGTTTGGATCCCCCGCCTGGTCGAGCGAATTGCAGCCACCTCTGGCCAATCTTTGCCGGCGTGCACCGAGACCTCCACGTCAACTCCTATAATTTCAGAATCTACATTGGATGACAATAGTGTCAATGTCGACGTGTCTGCATCGTGTTCAGACACATCAAATTGGGGAGACGGGTTTGAGGCAGGTTGGTGGGAAGGAGACGAAGTTGAGTCATCATTTGAGAGCTTGTGGACTGAGGAAAACATTCGTTTCTTACAACAACAGCTGTTTGAT

Protein sequence

TRALFLSVNGGSCEERAVDGGRRFLAFPLRYSSRRGPLELRLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNRLVWIPRLVERIAATSGQSLPACTETSTSTPIISESTLDDNSVNVDVSASCSDTSNWGDGFEAGWWEGDEVESSFESLWTEENIRFLQQQLFD
Homology
[Close]
BLAST of Cp4.1LG03g05180 vs. Swiss-Prot
Match: MY108_ARATH (Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 39/43 (90.70%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          L+RTGKSCRLRWLNYLRP+VRRGNITL+EQLLIL+LHSRWGNR
Sbjct: 53 LQRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNR 95

[Close]
BLAST of Cp4.1LG03g05180 vs. Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-15
Identity = 36/43 (83.72%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRP+VRRGNIT +EQLLI++LH++WGNR
Sbjct: 47 LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR 89

[Close]
BLAST of Cp4.1LG03g05180 vs. Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.2e-15
Identity = 35/43 (81.40%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRP+VRRGNIT +EQL+I++LH++WGNR
Sbjct: 54 LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNR 96

[Close]
BLAST of Cp4.1LG03g05180 vs. Swiss-Prot
Match: MYB24_ARATH (Transcription factor MYB24 OS=Arabidopsis thaliana GN=MYB24 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRP+VRRGNIT +EQL I++LH++WGNR
Sbjct: 51 LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLTIMELHAKWGNR 93

[Close]
BLAST of Cp4.1LG03g05180 vs. Swiss-Prot
Match: MYB57_ARATH (Transcription factor MYB57 OS=Arabidopsis thaliana GN=MYB57 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.8e-14
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 42  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
           LKRTGKSCRLRWLNYLRP+VRRGNIT +EQLLI+QLH++ GNR
Sbjct: 59  LKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLHAKLGNR 101

[Close]
BLAST of Cp4.1LG03g05180 vs. TrEMBL
Match: B9GSW9_POPTR (Putative MYB transcription factor family protein OS=Populus trichocarpa GN=POPTR_0002s19250g PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.8e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR
Sbjct: 56 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 98

[Close]
BLAST of Cp4.1LG03g05180 vs. TrEMBL
Match: A0A0A0L862_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G535090 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRPN+RRGNITLQEQLLILQLHSRWGNR
Sbjct: 41 LKRTGKSCRLRWLNYLRPNLRRGNITLQEQLLILQLHSRWGNR 83

[Close]
BLAST of Cp4.1LG03g05180 vs. TrEMBL
Match: I1L7M4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G010400 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
           LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLIL+LHSRWGNR
Sbjct: 65  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNR 107

[Close]
BLAST of Cp4.1LG03g05180 vs. TrEMBL
Match: A0A0B2NYJ0_GLYSO (Myb-related protein 305 OS=Glycine soja GN=glysoja_022933 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
           LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLIL+LHSRWGNR
Sbjct: 65  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNR 107

[Close]
BLAST of Cp4.1LG03g05180 vs. TrEMBL
Match: A0A0L9TXN4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g149800 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLIL+LHSRWGNR
Sbjct: 55 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNR 97

[Close]
BLAST of Cp4.1LG03g05180 vs. TAIR10
Match: AT3G06490.1 (AT3G06490.1 myb domain protein 108)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-17
Identity = 39/43 (90.70%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          L+RTGKSCRLRWLNYLRP+VRRGNITL+EQLLIL+LHSRWGNR
Sbjct: 53 LQRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNR 95

[Close]
BLAST of Cp4.1LG03g05180 vs. TAIR10
Match: AT5G49620.2 (AT5G49620.2 myb domain protein 78)

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-17
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 1 

Query: 42  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGN 84
           LKRTGKSCRLRWLNYLRP+VRRGNITL+EQLLIL+LH+RWGN
Sbjct: 60  LKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGN 101

[Close]
BLAST of Cp4.1LG03g05180 vs. TAIR10
Match: AT1G68320.1 (AT1G68320.1 myb domain protein 62)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-16
Identity = 36/43 (83.72%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYL+P++RRGN+T QEQLLIL+LHS+WGNR
Sbjct: 53 LKRTGKSCRLRWLNYLKPDIRRGNLTPQEQLLILELHSKWGNR 95

[Close]
BLAST of Cp4.1LG03g05180 vs. TAIR10
Match: AT2G47190.1 (AT2G47190.1 myb domain protein 2)

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-16
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRP+VRRGNITL+EQ +IL+LHS WGNR
Sbjct: 54 LKRTGKSCRLRWLNYLRPDVRRGNITLEEQFMILKLHSLWGNR 96

[Close]
BLAST of Cp4.1LG03g05180 vs. TAIR10
Match: AT3G27810.1 (AT3G27810.1 myb domain protein 21)

HSP 1 Score: 81.6 bits (200), Expect = 5.2e-16
Identity = 35/43 (81.40%), Postives = 42/43 (97.67%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRP+VRRGNIT +EQL+I++LH++WGNR
Sbjct: 54 LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNR 96

[Close]
BLAST of Cp4.1LG03g05180 vs. NCBI nr
Match: gi|224068634|ref|XP_002302787.1| (putative MYB transcription factor family protein [Populus trichocarpa])

HSP 1 Score: 92.4 bits (228), Expect = 8.3e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR
Sbjct: 56 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 98

[Close]
BLAST of Cp4.1LG03g05180 vs. NCBI nr
Match: gi|920692123|gb|KOM35348.1| (hypothetical protein LR48_Vigan02g149800 [Vigna angularis])

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLIL+LHSRWGNR
Sbjct: 55 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNR 97

[Close]
BLAST of Cp4.1LG03g05180 vs. NCBI nr
Match: gi|778681523|ref|XP_011651532.1| (PREDICTED: transcription factor MYB108-like [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42 LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
          LKRTGKSCRLRWLNYLRPN+RRGNITLQEQLLILQLHSRWGNR
Sbjct: 41 LKRTGKSCRLRWLNYLRPNLRRGNITLQEQLLILQLHSRWGNR 83

[Close]
BLAST of Cp4.1LG03g05180 vs. NCBI nr
Match: gi|593689006|ref|XP_007145122.1| (hypothetical protein PHAVU_007G211900g [Phaseolus vulgaris])

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
           LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLIL+LHSRWGNR
Sbjct: 63  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNR 105

[Close]
BLAST of Cp4.1LG03g05180 vs. NCBI nr
Match: gi|356536671|ref|XP_003536860.1| (PREDICTED: transcription factor MYB108-like [Glycine max])

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 

Query: 42  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILQLHSRWGNR 85
           LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLIL+LHSRWGNR
Sbjct: 65  LKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNR 107

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g05180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MY108_ARATH2.8e-1690.70Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1[more]
MYB05_ANTMA5.4e-1583.72Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1[more]
MYB21_ARATH9.2e-1581.40Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1[more]
MYB24_ARATH2.0e-1481.40Transcription factor MYB24 OS=Arabidopsis thaliana GN=MYB24 PE=1 SV=1[more]
MYB57_ARATH7.8e-1483.72Transcription factor MYB57 OS=Arabidopsis thaliana GN=MYB57 PE=2 SV=1[more]
BLAST of Cp4.1LG03g05180 vs. TrEMBL
Match NameE-valueIdentityDescription
B9GSW9_POPTR5.8e-16100.00Putative MYB transcription factor family protein OS=Populus trichocarpa GN=POPTR... [more]
A0A0A0L862_CUCSA1.3e-1597.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G535090 PE=4 SV=1[more]
I1L7M4_SOYBN1.3e-1597.67Uncharacterized protein OS=Glycine max GN=GLYMA_10G010400 PE=4 SV=1[more]
A0A0B2NYJ0_GLYSO1.3e-1597.67Myb-related protein 305 OS=Glycine soja GN=glysoja_022933 PE=4 SV=1[more]
A0A0L9TXN4_PHAAN1.3e-1597.67Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g149800 PE=4 SV=1[more]
BLAST of Cp4.1LG03g05180 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06490.11.6e-1790.70 myb domain protein 108[more]
AT5G49620.23.6e-1790.48 myb domain protein 78[more]
AT1G68320.11.8e-1683.72 myb domain protein 62[more]
AT2G47190.12.3e-1686.05 myb domain protein 2[more]
AT3G27810.15.2e-1681.40 myb domain protein 21[more]
BLAST of Cp4.1LG03g05180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|224068634|ref|XP_002302787.1|8.3e-16100.00putative MYB transcription factor family protein [Populus trichocarpa][more]
gi|920692123|gb|KOM35348.1|1.8e-1597.67hypothetical protein LR48_Vigan02g149800 [Vigna angularis][more]
gi|778681523|ref|XP_011651532.1|1.8e-1597.67PREDICTED: transcription factor MYB108-like [Cucumis sativus][more]
gi|593689006|ref|XP_007145122.1|1.8e-1597.67hypothetical protein PHAVU_007G211900g [Phaseolus vulgaris][more]
gi|356536671|ref|XP_003536860.1|1.8e-1597.67PREDICTED: transcription factor MYB108-like [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0046686 response to cadmium ion
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0016036 cellular response to phosphate starvation
biological_process GO:0009723 response to ethylene
biological_process GO:0009751 response to salicylic acid
biological_process GO:0009651 response to salt stress
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0030154 cell differentiation
biological_process GO:0009414 response to water deprivation
biological_process GO:0044699 single-organism process
biological_process GO:0006950 response to stress
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0009725 response to hormone
biological_process GO:0001101 response to acid chemical
biological_process GO:0009987 cellular process
biological_process GO:0009737 response to abscisic acid
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
molecular_function GO:0044212 transcription regulatory region DNA binding
molecular_function GO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g05180.1Cp4.1LG03g05180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 43..56
score: 1.5E-5coord: 57..85
score: 7.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 43..88
score: 6.45
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 42..133
score: 3.7
NoneNo IPR availablePANTHERPTHR10641:SF494TRANSCRIPTION FACTOR MYB108coord: 42..133
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g05180CmoCh14G009690Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g05180Cla017337Watermelon (97103) v1cpewmB595
Cp4.1LG03g05180ClCG10G011640Watermelon (Charleston Gray)cpewcgB544
Cp4.1LG03g05180Lsi03G011320Bottle gourd (USVL1VR-Ls)cpelsiB500
Cp4.1LG03g05180MELO3C012926.2Melon (DHL92) v3.6.1cpemedB681
Cp4.1LG03g05180MELO3C023633.2Melon (DHL92) v3.6.1cpemedB665
Cp4.1LG03g05180CsaV3_3G026520Cucumber (Chinese Long) v3cpecucB0763
Cp4.1LG03g05180Bhi09G000649Wax gourdcpewgoB0819
Cp4.1LG03g05180Bhi11G001092Wax gourdcpewgoB0742
Cp4.1LG03g05180CsGy7G016810Cucumber (Gy14) v2cgybcpeB957
Cp4.1LG03g05180CsGy3G023480Cucumber (Gy14) v2cgybcpeB410
Cp4.1LG03g05180Carg13400Silver-seed gourdcarcpeB0634
Cp4.1LG03g05180Carg07365Silver-seed gourdcarcpeB1073
Cp4.1LG03g05180Carg11174Silver-seed gourdcarcpeB1147
Cp4.1LG03g05180Carg07101Silver-seed gourdcarcpeB0164
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g05180Cp4.1LG02g15980Cucurbita pepo (Zucchini)cpecpeB449
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g05180Cucumber (Chinese Long) v3cpecucB0748
Cp4.1LG03g05180Cucumber (Chinese Long) v3cpecucB0789
Cp4.1LG03g05180Wax gourdcpewgoB0757
Cp4.1LG03g05180Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG03g05180Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG03g05180Cucumber (Gy14) v1cgycpeB0539
Cp4.1LG03g05180Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g05180Cucurbita maxima (Rimu)cmacpeB404
Cp4.1LG03g05180Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g05180Cucurbita maxima (Rimu)cmacpeB927
Cp4.1LG03g05180Cucurbita moschata (Rifu)cmocpeB367
Cp4.1LG03g05180Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g05180Cucurbita moschata (Rifu)cmocpeB861
Cp4.1LG03g05180Wild cucumber (PI 183967)cpecpiB601
Cp4.1LG03g05180Wild cucumber (PI 183967)cpecpiB637
Cp4.1LG03g05180Cucumber (Chinese Long) v2cpecuB599
Cp4.1LG03g05180Cucumber (Chinese Long) v2cpecuB633
Cp4.1LG03g05180Bottle gourd (USVL1VR-Ls)cpelsiB494
Cp4.1LG03g05180Watermelon (Charleston Gray)cpewcgB543
Cp4.1LG03g05180Watermelon (97103) v1cpewmB594
Cp4.1LG03g05180Melon (DHL92) v3.5.1cpemeB559
Cp4.1LG03g05180Melon (DHL92) v3.5.1cpemeB574
Cp4.1LG03g05180Cucumber (Gy14) v2cgybcpeB396