Cp4.1LG02g15980 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g15980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	R2r3-myb transcription factor, putative
Location	Cp4.1LG02 : 13064958 .. 13065281 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACATGTTTGGATCCCTCGCATGGTCGAGCGGATCACGGCCACTTCGAGTCCTTTACCGTCATTGCCACCGCCATGCATCGACATCTCCACGTCAACTTCAATGGTTTTTGAAACTACATGGGCAAACCCAAATGACAATAACGTCCCTGCCAATGTGTCGGCGTCGTCTTCCGACGTGTCGGATTTGACGGTTGTGGATGGGTCGGGTTGGGATGACGAATTCGGGTCGGAATGGTGGGAAGGAGACGGAGTTGACTCGTTAGAGAGCTTGTGGACGGAAGAAAACATTTGTTTCTTACAGCAACAGCTCTTTGACTAG

mRNA sequence

ATGAGACATGTTTGGATCCCTCGCATGGTCGAGCGGATCACGGCCACTTCGAGTCCTTTACCGTCATTGCCACCGCCATGCATCGACATCTCCACGTCAACTTCAATGGTTTTTGAAACTACATGGGCAAACCCAAATGACAATAACGTCCCTGCCAATGTGTCGGCGTCGTCTTCCGACGTGTCGGATTTGACGGTTGTGGATGGGTCGGGTTGGGATGACGAATTCGGGTCGGAATGGTGGGAAGGAGACGGAGTTGACTCGTTAGAGAGCTTGTGGACGGAAGAAAACATTTGTTTCTTACAGCAACAGCTCTTTGACTAG

Coding sequence (CDS)

ATGAGACATGTTTGGATCCCTCGCATGGTCGAGCGGATCACGGCCACTTCGAGTCCTTTACCGTCATTGCCACCGCCATGCATCGACATCTCCACGTCAACTTCAATGGTTTTTGAAACTACATGGGCAAACCCAAATGACAATAACGTCCCTGCCAATGTGTCGGCGTCGTCTTCCGACGTGTCGGATTTGACGGTTGTGGATGGGTCGGGTTGGGATGACGAATTCGGGTCGGAATGGTGGGAAGGAGACGGAGTTGACTCGTTAGAGAGCTTGTGGACGGAAGAAAACATTTGTTTCTTACAGCAACAGCTCTTTGACTAG

Protein sequence

MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETTWANPNDNNVPANVSASSSDVSDLTVVDGSGWDDEFGSEWWEGDGVDSLESLWTEENICFLQQQLFD

Homology

[Close]

BLAST of Cp4.1LG02g15980 vs. TrEMBL
Match: A0A0A0L862_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G535090 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-14
Identity = 59/113 (52.21%), Postives = 63/113 (55.75%), Query Frame = 1


Query: 1   MRHVWIPRMVERITATSS---------PLPSLP-PPCIDISTSTSMVFETTWANPNDNNV 60
           MR VWIPR+VERI A +S         P PSL  PPCI   TSTS     TW   +   +
Sbjct: 127 MRLVWIPRLVERIEAATSAQSPPLQPPPPPSLLLPPCIATDTSTS-----TWEQKSI--I 186

Query: 61  PANVSASSSDVSDLTVVDGSGWDDEFGSEWWEGDGVDS-LESLWTEENICFLQ 103
           P NVS S SD SDL               WWEGDGVDS  ESLWTEENICFLQ
Sbjct: 187 PENVSGSCSDTSDLR------------GGWWEGDGVDSSFESLWTEENICFLQ 220

[Close]

BLAST of Cp4.1LG02g15980 vs. TrEMBL
Match: B9RN96_RICCO (R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1345780 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 49/123 (39.84%), Postives = 64/123 (52.03%), Query Frame = 1


Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTS--TSMVFETTW-ANPNDNNVPANVSAS 60
           MR++W+PR++ERI A+SS   +  P  I        +   ET W  +PN    P+  S+ 
Sbjct: 141 MRYIWMPRLIERIQASSSGSSTGQPTTIVNHNDHIAAAAGETEWRVDPNLIPEPSGTSSD 200

Query: 61  SSD-VSDLTVVDGSGWDD---EFGSEWWEG-----------DGVDSLESLWTEENICFLQ 106
           S D VSDLT       ++   E GS  W G           DG +SLES+W EENI FLQ
Sbjct: 201 SLDPVSDLTEYQNQSSEEYYKENGSGSWAGEVEMESNGLILDGGESLESIWNEENIWFLQ 260

[Close]

BLAST of Cp4.1LG02g15980 vs. TrEMBL
Match: A0A067JWQ2_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_14068 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-06
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 1


Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETT----WANPN----DNNVPA 60
           MR++WIPR++ERI A S   P+ P   I+ +    +  E T    W +PN     +  P+
Sbjct: 142 MRYIWIPRLIERIRAASESSPAQPTVSINSNYDEIISNEVTAGGDWVDPNFMPEQSGTPS 201

Query: 61  -NVSASSSDVSDLT--------VVDGSG--WDDEFGSEWWEGDGVD-----SLESLWTEE 106
            ++    S VSDLT        + +GSG   ++E G   W G+        S+ESLW EE
Sbjct: 202 DSLETQVSAVSDLTDNQNPSSSMQNGSGLYLEEESGCWGWNGEMEQHNNGLSMESLWNEE 261

[Close]

BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: gi|778681523|ref|XP_011651532.1| (PREDICTED: transcription factor MYB108-like [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-13
Identity = 59/113 (52.21%), Postives = 63/113 (55.75%), Query Frame = 1


Query: 1   MRHVWIPRMVERITATSS---------PLPSLP-PPCIDISTSTSMVFETTWANPNDNNV 60
           MR VWIPR+VERI A +S         P PSL  PPCI   TSTS     TW   +   +
Sbjct: 127 MRLVWIPRLVERIEAATSAQSPPLQPPPPPSLLLPPCIATDTSTS-----TWEQKSI--I 186

Query: 61  PANVSASSSDVSDLTVVDGSGWDDEFGSEWWEGDGVDS-LESLWTEENICFLQ 103
           P NVS S SD SDL               WWEGDGVDS  ESLWTEENICFLQ
Sbjct: 187 PENVSGSCSDTSDLR------------GGWWEGDGVDSSFESLWTEENICFLQ 220

[Close]

BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: gi|659093280|ref|XP_008447462.1| (PREDICTED: transcription factor MYB108 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-13
Identity = 59/119 (49.58%), Postives = 65/119 (54.62%), Query Frame = 1


Query: 1   MRHVWIPRMVERI---TATSSPLPSLPPP----------CIDISTSTSMVFETTWANPND 60
           MR VWIPR+VERI   T+  SP P  PPP          CID  TSTS     TW + + 
Sbjct: 127 MRLVWIPRLVERIEAATSAQSPPPPPPPPPPPPPPLLAPCIDTDTSTS-----TWEHKSI 186

Query: 61  NNVPANVSASSSDVSDLTVVDGSGWDDEFGSEWWEGDGVDS-LESLWTEENICFLQQQL 106
              P +VS S SD SDLT              WWEGDGV+S LE LWTEENICFLQ  L
Sbjct: 187 V-APDHVSGSYSDTSDLT------------GGWWEGDGVESSLECLWTEENICFLQHIL 227

[Close]

BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: gi|255548357|ref|XP_002515235.1| (PREDICTED: transcription factor MYB108 [Ricinus communis])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 49/123 (39.84%), Postives = 64/123 (52.03%), Query Frame = 1


Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTS--TSMVFETTW-ANPNDNNVPANVSAS 60
           MR++W+PR++ERI A+SS   +  P  I        +   ET W  +PN    P+  S+ 
Sbjct: 141 MRYIWMPRLIERIQASSSGSSTGQPTTIVNHNDHIAAAAGETEWRVDPNLIPEPSGTSSD 200

Query: 61  SSD-VSDLTVVDGSGWDD---EFGSEWWEG-----------DGVDSLESLWTEENICFLQ 106
           S D VSDLT       ++   E GS  W G           DG +SLES+W EENI FLQ
Sbjct: 201 SLDPVSDLTEYQNQSSEEYYKENGSGSWAGEVEMESNGLILDGGESLESIWNEENIWFLQ 260

[Close]

BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: gi|802691684|ref|XP_012082951.1| (PREDICTED: transcription factor MYB108 [Jatropha curcas])

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 1


Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTSTSMVFETT----WANPN----DNNVPA 60
           MR++WIPR++ERI A S   P+ P   I+ +    +  E T    W +PN     +  P+
Sbjct: 142 MRYIWIPRLIERIRAASESSPAQPTVSINSNYDEIISNEVTAGGDWVDPNFMPEQSGTPS 201

Query: 61  -NVSASSSDVSDLT--------VVDGSG--WDDEFGSEWWEGDGVD-----SLESLWTEE 106
            ++    S VSDLT        + +GSG   ++E G   W G+        S+ESLW EE
Sbjct: 202 DSLETQVSAVSDLTDNQNPSSSMQNGSGLYLEEESGCWGWNGEMEQHNNGLSMESLWNEE 261

[Close]

BLAST of Cp4.1LG02g15980 vs. NCBI nr
Match: gi|694382344|ref|XP_009367189.1| (PREDICTED: transcription factor MYB108-like [Pyrus x bretschneideri])

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-06
Identity = 42/136 (30.88%), Postives = 68/136 (50.00%), Query Frame = 1


Query: 1   MRHVWIPRMVERITATSSPLPSLPPPCIDISTST--------SMVFETTWANPNDN---- 60
           MR++WIPR++ERI +    +P  P  CI  ++ +        + V ET+ +N +D+    
Sbjct: 153 MRYIWIPRLIERIGSLPEAVPDQPSTCITTTSESECQYLVDPNFVPETSGSNSSDSYDQV 212

Query: 61  ---NVPANVSASSSDVSDLTVV------DGSGWDDEFGSE--------WWEGDGVDSLES 108
              ++P + ++S  +             +GSG+     S+        +W   G  S+E+
Sbjct: 213 QVCSIPTDPTSSGDEFKTYPCSGQYGSENGSGYSKNGNSDIHGFEQSNYWSTGGDTSVEN 272

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g15980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g15980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L862_CUCSA	9.6e-14	52.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G535090 PE=4 SV=1	[more]
B9RN96_RICCO	1.1e-06	39.84	R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1345780 PE=4...	[more]
A0A067JWQ2_JATCU	2.5e-06	37.21	MYB family protein OS=Jatropha curcas GN=JCGZ_14068 PE=4 SV=1	[more]

BLAST of Cp4.1LG02g15980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g15980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778681523\|ref\|XP_011651532.1\|	1.4e-13	52.21	PREDICTED: transcription factor MYB108-like [Cucumis sativus]	[more]
gi\|659093280\|ref\|XP_008447462.1\|	5.2e-13	49.58	PREDICTED: transcription factor MYB108 [Cucumis melo]	[more]
gi\|255548357\|ref\|XP_002515235.1\|	1.6e-06	39.84	PREDICTED: transcription factor MYB108 [Ricinus communis]	[more]
gi\|802691684\|ref\|XP_012082951.1\|	3.6e-06	37.21	PREDICTED: transcription factor MYB108 [Jatropha curcas]	[more]
gi\|694382344\|ref\|XP_009367189.1\|	6.2e-06	30.88	PREDICTED: transcription factor MYB108-like [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g15980.1	Cp4.1LG02g15980.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g15980	CmaCh01G002720	Cucurbita maxima (Rimu)	cmacpeB491
Cp4.1LG02g15980	CmoCh01G002810	Cucurbita moschata (Rifu)	cmocpeB449
Cp4.1LG02g15980	CsaV3_3G026520	Cucumber (Chinese Long) v3	cpecucB0700
Cp4.1LG02g15980	Bhi11G001092	Wax gourd	cpewgoB0668
Cp4.1LG02g15980	Carg07365	Silver-seed gourd	carcpeB1072
Cp4.1LG02g15980	Carg11174	Silver-seed gourd	carcpeB1146

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG02g15980	Cp4.1LG03g05180	Cucurbita pepo (Zucchini)	cpecpeB449

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG02g15980	Watermelon (97103) v1	cpewmB539
Cp4.1LG02g15980	Melon (DHL92) v3.5.1	cpemeB523
Cp4.1LG02g15980	Cucumber (Gy14) v2	cgybcpeB378
Cp4.1LG02g15980	Melon (DHL92) v3.6.1	cpemedB622
Cp4.1LG02g15980	Cucumber (Chinese Long) v3	cpecucB0684
Cp4.1LG02g15980	Wax gourd	cpewgoB0670
Cp4.1LG02g15980	Cucurbita pepo (Zucchini)	cpecpeB181
Cp4.1LG02g15980	Cucurbita pepo (Zucchini)	cpecpeB332
Cp4.1LG02g15980	Cucumber (Gy14) v1	cgycpeB0535
Cp4.1LG02g15980	Cucurbita maxima (Rimu)	cmacpeB279
Cp4.1LG02g15980	Cucurbita moschata (Rifu)	cmocpeB241
Cp4.1LG02g15980	Wild cucumber (PI 183967)	cpecpiB546
Cp4.1LG02g15980	Cucumber (Chinese Long) v2	cpecuB545
Cp4.1LG02g15980	Bottle gourd (USVL1VR-Ls)	cpelsiB452
Cp4.1LG02g15980	Watermelon (Charleston Gray)	cpewcgB486