Cp4.1LG03g00680 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g00680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNucleic acid-binding, OB-fold-like protein
LocationCp4.1LG03 : 1405833 .. 1408212 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCTATCGTTTGGTCTCTCTATAAATACCTCTTTTATCATTGCATACCAAGTCGAAAATTTCAATTTTGCCGCTCTCGAAAACCCGCGCTCTTTTTCCTCCGTCTCTCGCGGTTCGATTTCCATTTCCGACGAACTCCCCAGTTTCTGAATCAGGTAATGTAGCTCAGTGCTTTAGATTCTCCGATCGAGTGTTTTGAAAGATTCTTCCTCAGTTTGTTAGATTGAATTGCAGAATAAAATTCTTCCGACTCTTTTACTTGTCTCGTCGTGTGTGTAACCTATGGAATATGGATTTGTTTGTTTGGCGTCAAATTATGACTAGATGTTTTCCAGTTTGAGTCGGCAGGATCGGATTCGATTCGCTGATTATGGTGTGGCTTCCTGATTTGGTCCTTTAAGAAAGTGGAGAATTAGAATTGGACAGTCGCGAAGCTAAAAGAAGGGCTACTGATTCAAAATAATCCGCCCACAGTGACTATCATGCATATTCTTACTGTTACAATAAATTTTGCTTTCAAACACATGGTTGCCCTAGCAGTAAAGAGTTTTAAGGAAATGGATCAAACCATAGTAGCCACGTGATTTAACTTTTTACGAGTTATCTTGACACAAACCAAATATAGTAGTATTATGTGCTTGTCTTGTGGAATAATCGAGTGCATATGCGACCAAATGCTAACAAATGGATTTTCATTGATATCTGATTAACATTTGTAATACGTAGCAAACAGTTTTGAGTATAAATGTGAGTAATTGTTTGGATCTTCTCCCATTGGATTTTTGTAAGGAAGAATGTATTTGTGAAATGCTGTCTGCTACCATATTTTTCAAACGCCAGCATTTTTTTTTTATTGATTTGGTGTTCATGTCAAACAGTTTCCATCATTGCTCACATGGTGAAACAAGTTAGTTTTCTTTTTATTAAATGTTTTCCCTCTCTGAAAGACAACCTTCCTGGTGTTTTCTATAGATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCAGAAGGCAACGGAGTCATATACGGTAAATCAACAGATGACAACCAGATTACTGTGAAAGGGTCCCCACCCTTTACTCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACCGACAAATCGATACGAGCTGATGTTTGGACCAATTTTGGCGACTCATTTGGTATGCGCTCTTCTTCAGCTCTCCTTATTCTAGAATGACATTGGAAGCTGTATAAGTACTAATGCTCTATACATGTCTGAAGTTAATTTATGTTCTTTGAATTGGCTGAAGATGATCATTTAATTGTGTTTTCAGCTAATCATTGATTTTGAGCAGTATTTAGTTTTGAATTGATGTTTTCCCAAGGAGCCTAGCCAAATCTGGCATTTTAGATTTCTGAAGCATAACCTGGCTAGATTATAAGTTTGGAATCCGGATTATACCATTAAAGTTTATCTCAATTGTGAAATCTAAGCTGCGAATTAGTCATTTGGTATCTGACAATAATTCTGTATCAAGTTGAAGTTAATTCAATCCAAGTTAGCTCATATTCTCAACGGTTTGTTTCACCACGATGTTTTAAACATTCTTCTCCTTGGATGAGAATTCGAAGAGAGATCTGCCAATAATTGTCAGGATAAGTTACTTATAGATTCCTCTTTGGATCTTACTTTCAACATTCTTTGAGATTGGATGTGTTGTTGAATTTTTATCAACTTTTATCAGAAAGGGTTGCATTCTGAATTGTTTGTGTACCCCTGTTTGCAGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGGGAGTTCAAACCCTTGTTTGTCTGATATTCCAGCCAGACATTCATTGGCCAGAAAGCTCAAAGCCCTACCATCCCCTAAGTCGCCGATGTTTTCTTCACGTTCTTCTGAAGCGCCCTATATTTATCCTTCATACAGTATTGAACTTCTCAGGTAATGGATATATAAAATTTGAGTATGCACATGTATGTTTGGGTTAGAATATCTAGAATGAACATTGCTTCAAAATATTCATAAAAATTCTATTTTAATCGATTTTGTTTTTAGTTTTTTAAGGTTATATTAAGGTTTTTAACTGCTAACTGAAAATCCCTTCTGTTGTATTGAATACCTTGATCTGGGTAGAATTTTGTTGACATTTTAATCATGTTTGGTTATAATTTAGATGAGTTATCTCGAACTGATACAAACTATAATGTTTTAGGTGAAGCTCAAAATGTTCTGACAAACATAATGCCAACAAAATTATAATCAAATTCGTTTTTCAATTTCAGTGATTTGATATTTACTTGAAGCCATTGTTTTG

mRNA sequence

CATCTATCGTTTGGTCTCTCTATAAATACCTCTTTTATCATTGCATACCAAGTCGAAAATTTCAATTTTGCCGCTCTCGAAAACCCGCGCTCTTTTTCCTCCGTCTCTCGCGGTTCGATTTCCATTTCCGACGAACTCCCCAGTTTCTGAATCAGATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCAGAAGGCAACGGAGTCATATACGGTAAATCAACAGATGACAACCAGATTACTGTGAAAGGGTCCCCACCCTTTACTCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACCGACAAATCGATACGAGCTGATGTTTGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGGGAGTTCAAACCCTTGTTTGTCTGATATTCCAGCCAGACATTCATTGGCCAGAAAGCTCAAAGCCCTACCATCCCCTAAGTCGCCGATGTTTTCTTCACGTTCTTCTGAAGCGCCCTATATTTATCCTTCATACAGTATTGAACTTCTCAGGTAATGGATATATAAAATTTGAGTATGCACATGTATGTTTGGGTTAGAATATCTAGAATGAACATTGCTTCAAAATATTCATAAAAATTCTATTTTAATCGATTTTGTTTTTAGTTTTTTAAGGTTATATTAAGGTTTTTAACTGCTAACTGAAAATCCCTTCTGTTGTATTGAATACCTTGATCTGGGTAGAATTTTGTTGACATTTTAATCATGTTTGGTTATAATTTAGATGAGTTATCTCGAACTGATACAAACTATAATGTTTTAGGTGAAGCTCAAAATGTTCTGACAAACATAATGCCAACAAAATTATAATCAAATTCGTTTTTCAATTTCAGTGATTTGATATTTACTTGAAGCCATTGTTTTG

Coding sequence (CDS)

ATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCAGAAGGCAACGGAGTCATATACGGTAAATCAACAGATGACAACCAGATTACTGTGAAAGGGTCCCCACCCTTTACTCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACCGACAAATCGATACGAGCTGATGTTTGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGGGAGTTCAAACCCTTGTTTGTCTGA

Protein sequence

MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV
Homology
[Close]
BLAST of Cp4.1LG03g00680 vs. Swiss-Prot
Match: RFA3B_ARATH (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana GN=RPA3B PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-33
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGEF+ LF+
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of Cp4.1LG03g00680 vs. Swiss-Prot
Match: RFA3A_ARATH (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana GN=RPA3A PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-31
Identity = 64/107 (59.81%), Postives = 84/107 (78.50%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGS-PPFTLSK 60
           MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI V+GS PP  L+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANGEFK LF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of Cp4.1LG03g00680 vs. Swiss-Prot
Match: RFA3_ORYSJ (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica GN=RPA3 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-28
Identity = 56/106 (52.83%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTS P+ FVN E+L+++VGRRVR V+Q Q E  G++ G+STD +Q+T+KG+    +S +
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VE+IGIA+ +++IRA+V T+FG++FD + FN LC+LANG+ K LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]
BLAST of Cp4.1LG03g00680 vs. TrEMBL
Match: A0A0A0LGP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777000 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-49
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTDDNQITVKGSPPF LSKF
Sbjct: 40  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKF 99

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC  ANGEFKPLF+
Sbjct: 100 VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGEFKPLFI 145

[Close]
BLAST of Cp4.1LG03g00680 vs. TrEMBL
Match: M5VWZ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012221mg PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 8.5e-39
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTSNP+VFVNAELLRLYVGRRVRA+IQV     G + GKSTD+NQ+ VKGSPPF L+KF
Sbjct: 74  MDTSNPAVFVNAELLRLYVGRRVRALIQVVRTEGGTVIGKSTDENQLVVKGSPPFPLTKF 133

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIAD +KSI AD+W NFG++ DT+T+NQLCQLANG+FK LF+
Sbjct: 134 VEVIGIADGEKSIHADIWNNFGETIDTTTYNQLCQLANGDFKHLFI 179

[Close]
BLAST of Cp4.1LG03g00680 vs. TrEMBL
Match: D7TJ80_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03190 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.8e-36
Identity = 75/107 (70.09%), Postives = 92/107 (85.98%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPP-FTLSK 60
           MDTSNP+VFVN ELLR+YVGR+VRAVIQV     GVI GKSTD+ Q+ +KG+PP F L+ 
Sbjct: 1   MDTSNPAVFVNMELLRMYVGRKVRAVIQVIRSEGGVIIGKSTDEQQLVIKGTPPSFPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           FVEVIGIAD+++SIRA++WTNFGD+FDT  +NQLCQLANGE+K LF+
Sbjct: 61  FVEVIGIADSNQSIRAEIWTNFGDTFDTYAYNQLCQLANGEYKHLFL 107

[Close]
BLAST of Cp4.1LG03g00680 vs. TrEMBL
Match: W9QUA0_9ROSA (ABC transporter B family member 29 OS=Morus notabilis GN=L484_019140 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-35
Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTSNP+ FVNA+LLRLYVG+RVRA+IQV     G + GKSTDD QI VKG+PP   + F
Sbjct: 125 MDTSNPAAFVNADLLRLYVGKRVRALIQVVRSDGGSVVGKSTDDGQIIVKGNPPVPPTNF 184

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIG+AD+DKSIRA++WTNFGD+ DT  +NQLCQLAN +FK LF+
Sbjct: 185 VEVIGVADSDKSIRAEIWTNFGDAIDTHNYNQLCQLANSDFKHLFI 230

[Close]
BLAST of Cp4.1LG03g00680 vs. TrEMBL
Match: A0A0V0GY70_SOLCH (Putative replication protein A 14 kDa subunit B-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 71/107 (66.36%), Postives = 93/107 (86.92%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQV-QSEGNGVIYGKSTDDNQITVKGSPPFTLSK 60
           MDT+NP+VFVNAELLRLY+GRRVRAVIQV +S+G G + G+STDD QI VKG+PP  L+ 
Sbjct: 1   MDTTNPAVFVNAELLRLYMGRRVRAVIQVMRSDGGGTVNGRSTDDQQIVVKGNPPGPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           FVEV GIAD+++SIRA+VW+NFGD+ DT ++N++C LANG++K LF+
Sbjct: 61  FVEVTGIADSNQSIRAEVWSNFGDTLDTYSYNRICMLANGDYKHLFI 107

[Close]
BLAST of Cp4.1LG03g00680 vs. TAIR10
Match: AT4G18590.1 (AT4G18590.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 143.3 bits (360), Expect = 8.7e-35
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGEF+ LF+
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of Cp4.1LG03g00680 vs. TAIR10
Match: AT3G52630.1 (AT3G52630.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-32
Identity = 64/107 (59.81%), Postives = 84/107 (78.50%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGS-PPFTLSK 60
           MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI V+GS PP  L+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANGEFK LF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of Cp4.1LG03g00680 vs. NCBI nr
Match: gi|659084364|ref|XP_008442847.1| (PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 4.5e-49
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFK LF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106

[Close]
BLAST of Cp4.1LG03g00680 vs. NCBI nr
Match: gi|449462956|ref|XP_004149201.1| (PREDICTED: replication protein A 14 kDa subunit B [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 5.8e-49
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTDDNQITVKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC  ANGEFKPLF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGEFKPLFI 106

[Close]
BLAST of Cp4.1LG03g00680 vs. NCBI nr
Match: gi|700204008|gb|KGN59141.1| (hypothetical protein Csa_3G777000 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 5.8e-49
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTDDNQITVKGSPPF LSKF
Sbjct: 40  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKF 99

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC  ANGEFKPLF+
Sbjct: 100 VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGEFKPLFI 145

[Close]
BLAST of Cp4.1LG03g00680 vs. NCBI nr
Match: gi|645277010|ref|XP_008243562.1| (PREDICTED: replication protein A 14 kDa subunit B [Prunus mume])

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTSNP+VFVNAELLRLYVGRRVRA+IQV     G + GKSTD+NQ+ VKGSPPF L+KF
Sbjct: 1   MDTSNPAVFVNAELLRLYVGRRVRALIQVVRTEGGTVIGKSTDENQLVVKGSPPFPLTKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIAD +KSI AD+W NFG++ DT+T+NQLCQLANG+FK LF+
Sbjct: 61  VEVIGIADGEKSIHADIWNNFGETIDTTTYNQLCQLANGDFKHLFI 106

[Close]
BLAST of Cp4.1LG03g00680 vs. NCBI nr
Match: gi|595821002|ref|XP_007204743.1| (hypothetical protein PRUPE_ppa012221mg [Prunus persica])

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 60
           MDTSNP+VFVNAELLRLYVGRRVRA+IQV     G + GKSTD+NQ+ VKGSPPF L+KF
Sbjct: 74  MDTSNPAVFVNAELLRLYVGRRVRALIQVVRTEGGTVIGKSTDENQLVVKGSPPFPLTKF 133

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIAD +KSI AD+W NFG++ DT+T+NQLCQLANG+FK LF+
Sbjct: 134 VEVIGIADGEKSIHADIWNNFGETIDTTTYNQLCQLANGDFKHLFI 179

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g00680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RFA3B_ARATH1.5e-3363.21Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana GN=RPA3B PE=1 SV=... [more]
RFA3A_ARATH2.5e-3159.81Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana GN=RPA3A PE=2 SV=... [more]
RFA3_ORYSJ1.5e-2852.83Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica GN=RPA3 PE=... [more]
BLAST of Cp4.1LG03g00680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGP0_CUCSA4.1e-4992.45Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777000 PE=4 SV=1[more]
M5VWZ0_PRUPE8.5e-3973.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012221mg PE=4 SV=1[more]
D7TJ80_VITVI8.8e-3670.09Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03190 PE=4 SV=... [more]
W9QUA0_9ROSA2.6e-3567.92ABC transporter B family member 29 OS=Morus notabilis GN=L484_019140 PE=4 SV=1[more]
A0A0V0GY70_SOLCH2.8e-3466.36Putative replication protein A 14 kDa subunit B-like OS=Solanum chacoense PE=4 S... [more]
BLAST of Cp4.1LG03g00680 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18590.18.7e-3563.21 Nucleic acid-binding, OB-fold-like protein[more]
AT3G52630.11.4e-3259.81 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of Cp4.1LG03g00680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659084364|ref|XP_008442847.1|4.5e-4994.34PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo][more]
gi|449462956|ref|XP_004149201.1|5.8e-4992.45PREDICTED: replication protein A 14 kDa subunit B [Cucumis sativus][more]
gi|700204008|gb|KGN59141.1|5.8e-4992.45hypothetical protein Csa_3G777000 [Cucumis sativus][more]
gi|645277010|ref|XP_008243562.1|1.2e-3873.58PREDICTED: replication protein A 14 kDa subunit B [Prunus mume][more]
gi|595821002|ref|XP_007204743.1|1.2e-3873.58hypothetical protein PRUPE_ppa012221mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006281DNA repair
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR013970Rfa2
IPR012340NA-bd_OB-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005634 nucleus
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g00680.1Cp4.1LG03g00680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 5..105
score: 1.5
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 5..105
score: 9.42
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 1..99
score: 1.2
NoneNo IPR availablePANTHERPTHR31614FAMILY NOT NAMEDcoord: 1..106
score: 7.1
NoneNo IPR availablePANTHERPTHR31614:SF8REPLICATION PROTEIN A 14 KDA SUBUNIT Acoord: 1..106
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g00680Cucsa.241220Cucumber (Gy14) v1cgycpeB0644
Cp4.1LG03g00680CmaCh14G003180Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g00680CmaCh06G004800Cucurbita maxima (Rimu)cmacpeB830
Cp4.1LG03g00680CmoCh06G004810Cucurbita moschata (Rifu)cmocpeB783
Cp4.1LG03g00680CmoCh14G003110Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g00680Cla017684Watermelon (97103) v1cpewmB597
Cp4.1LG03g00680Csa3G777000Cucumber (Chinese Long) v2cpecuB597
Cp4.1LG03g00680MELO3C009479Melon (DHL92) v3.5.1cpemeB571
Cp4.1LG03g00680ClCG10G018900Watermelon (Charleston Gray)cpewcgB546
Cp4.1LG03g00680CSPI03G34990Wild cucumber (PI 183967)cpecpiB599
Cp4.1LG03g00680Lsi03G018850Bottle gourd (USVL1VR-Ls)cpelsiB503
Cp4.1LG03g00680MELO3C009479.2Melon (DHL92) v3.6.1cpemedB678
Cp4.1LG03g00680CsaV3_3G037350Cucumber (Chinese Long) v3cpecucB0747
Cp4.1LG03g00680Bhi11G001926Wax gourdcpewgoB0747
Cp4.1LG03g00680CsGy3G032440Cucumber (Gy14) v2cgybcpeB395
Cp4.1LG03g00680Carg25877Silver-seed gourdcarcpeB0868
Cp4.1LG03g00680Carg03665Silver-seed gourdcarcpeB0353
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g00680Cp4.1LG08g09990Cucurbita pepo (Zucchini)cpecpeB487
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g00680Silver-seed gourdcarcpeB0216
Cp4.1LG03g00680Silver-seed gourdcarcpeB0339
Cp4.1LG03g00680Silver-seed gourdcarcpeB0580
Cp4.1LG03g00680Silver-seed gourdcarcpeB1138
Cp4.1LG03g00680Cucumber (Chinese Long) v3cpecucB0778
Cp4.1LG03g00680Wax gourdcpewgoB0752
Cp4.1LG03g00680Wax gourdcpewgoB0813
Cp4.1LG03g00680Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG03g00680Cucurbita pepo (Zucchini)cpecpeB302
Cp4.1LG03g00680Cucurbita pepo (Zucchini)cpecpeB416
Cp4.1LG03g00680Cucumber (Gy14) v1cgycpeB0147
Cp4.1LG03g00680Cucurbita maxima (Rimu)cmacpeB572
Cp4.1LG03g00680Cucurbita maxima (Rimu)cmacpeB681
Cp4.1LG03g00680Cucurbita maxima (Rimu)cmacpeB883
Cp4.1LG03g00680Cucurbita moschata (Rifu)cmocpeB523
Cp4.1LG03g00680Cucurbita moschata (Rifu)cmocpeB635
Cp4.1LG03g00680Cucurbita moschata (Rifu)cmocpeB821
Cp4.1LG03g00680Wild cucumber (PI 183967)cpecpiB627
Cp4.1LG03g00680Cucumber (Chinese Long) v2cpecuB624
Cp4.1LG03g00680Bottle gourd (USVL1VR-Ls)cpelsiB488
Cp4.1LG03g00680Bottle gourd (USVL1VR-Ls)cpelsiB491
Cp4.1LG03g00680Watermelon (Charleston Gray)cpewcgB551
Cp4.1LG03g00680Watermelon (Charleston Gray)cpewcgB553
Cp4.1LG03g00680Watermelon (97103) v1cpewmB618
Cp4.1LG03g00680Watermelon (97103) v1cpewmB620
Cp4.1LG03g00680Melon (DHL92) v3.5.1cpemeB592
Cp4.1LG03g00680Melon (DHL92) v3.6.1cpemedB702