Carg03665 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03665
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	replication protein A 14 kDa subunit B
Location	Cucurbita_argyrosperma_scaffold_006 : 1282378 .. 1283654 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACATCAAACCCTTCAGTTTTTGTGAGTGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCATATACGGTAAATCAACAGATGACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATACGAGCTGATGTATGGACCAATTTTGGCGACTCATTTGGTATGCGCTCTTATTTAGCTCTCCTTATTCTAGAATGACACTGGAAGCTGTACAGTACTAATGCTCTATACATGTCTGAAGTTAATTTATGTTCTTTGAATTGGCTGAAGATGATCATTTAATTGTGTTTTCAGCTAATCATTGATATTGAGCAGTATTTAGTTTTGAATTGATGTTTTCCCAAGGAGCCTAGCCAAATCTGGCATTTTAGATTTCTGAAGCATAACCTGGCTAGATCATAAGTTTGGAATCCGGACTATACCATTAAAGTTTATCACAATAGTGAAATCTAAGCTGCAAATTAGTCATTTCGTATCTGACATTAATTCTGTATCAAGTTGAAGTTGATTCAATCCAGATCTGCCAATAATTGTCAGGATAAGTTACTTATAGATTCCTCTTTGGATCATACTTTCAACATTCTTTGAGATTGGATGTGTTGTTGAATTTTTATCAACTTTTATCAGAAAGGGTTGCATTCTGAATTCTTTGTGTACCCCTGTTTGCAGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGATATTCAAGCCAGACATTCATTGGCCGGAAAGCTCAAACCCCTACCATCCCCTCCTGTGACACACTAAGTCGCCGATGTTTTCTTCACGTTCTTCTGAAGCGCCCTAGATTTATCGTTCATACAGTATTGAACTTCTCAGGTAATGGATATATAAAATTTGAGTATGCACATGTATGTTTGGGTTAGAATATCTAGAATGAACATTGCTTCAAAATATTCATAAAAAATCTATTTTAATCGATTTTGTTTTTAGCTTTTTAAGGTTATTATAAGGTTCTTAACTGCTAACTGAAACCCACAAACTGAAAATCCCTTCTGTTGTATCGACTGCATTGATCTGGGTAGAATTTTGTTGACATTTTAATCATGTTTGTTTATAATTTAGATGAGTGATCTCGAACTGATACAAACTCTAATGTTTTAGGTGAAGCTTAAAATGTTCTGACA

mRNA sequence

ATGGATACATCAAACCCTTCAGTTTTTGTGAGTGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCATATACGGTAAATCAACAGATGACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATACGAGCTGATGTATGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGATATTCAAGCCAGACATTCATTGGCCGGAAAGCTCAAACCCCTACCATCCCCTCCTGTGACACACTAAGTCGCCGATGTTTTCTTCACGTTCTTCTGAAGCGCCCTAGATTTATCGTTCATACAGTATTGAACTTCTCAGGTAATGGATATATAAAATTTGAGTATGCACATGTATGTTTGGGTTAGAATATCTAGAATGAACATTGCTTCAAAATATTCATAAAAAATCTATTTTAATCGATTTTGTTTTTAGCTTTTTAAGGTTATTATAAGGTTCTTAACTGCTAACTGAAACCCACAAACTGAAAATCCCTTCTGTTGTATCGACTGCATTGATCTGGGTAGAATTTTGTTGACATTTTAATCATGTTTGTTTATAATTTAGATGAGTGATCTCGAACTGATACAAACTCTAATGTTTTAGGTGAAGCTTAAAATGTTCTGACA

Coding sequence (CDS)

ATGGATACATCAAACCCTTCAGTTTTTGTGAGTGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCATATACGGTAAATCAACAGATGACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATACGAGCTGATGTATGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGA

Protein sequence

MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV

Homology

[Close]

BLAST of Carg03665 vs. NCBI nr
Match: XP_022935108.1 (replication protein A 14 kDa subunit B-like [Cucurbita moschata])

HSP 1 Score: 212.2 bits (539), Expect = 8.4e-52
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 106

[Close]

BLAST of Carg03665 vs. NCBI nr
Match: XP_022983164.1 (replication protein A 14 kDa subunit B-like [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 3.2e-51
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFV+AELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDD+QITVKGSPPFSLSKF
Sbjct: 1   MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFSLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 106

[Close]

BLAST of Carg03665 vs. NCBI nr
Match: XP_023528146.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 4.2e-51
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QITVKGSPPF+LSKF
Sbjct: 54  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 113

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV
Sbjct: 114 VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 159

[Close]

BLAST of Carg03665 vs. NCBI nr
Match: XP_022144611.1 (replication protein A 14 kDa subunit B [Momordica charantia])

HSP 1 Score: 206.5 bits (524), Expect = 4.6e-50
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QI VKGSPPFSLSKF
Sbjct: 60  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKF 119

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGEFKPLF+
Sbjct: 120 VEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI 165

[Close]

BLAST of Carg03665 vs. NCBI nr
Match: XP_022943091.1 (replication protein A 14 kDa subunit B-like [Cucurbita moschata] >XP_023005729.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 3.9e-49
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFV+AELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD++QI VKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGEFKPLF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGEFKPLFI 106

[Close]

BLAST of Carg03665 vs. TAIR10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 141.0 bits (354), Expect = 4.3e-34
Identity = 66/106 (62.26%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTS+P+ FV+  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGEF+ LF+
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of Carg03665 vs. TAIR10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 134.0 bits (336), Expect = 5.3e-32
Identity = 63/107 (58.88%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSK 60
           MDTS+PS FV+  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANGEFK LF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of Carg03665 vs. Swiss-Prot
Match: sp|Q6NLG7|RFA3B_ARATH (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.8e-33
Identity = 66/106 (62.26%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTS+P+ FV+  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGEF+ LF+
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of Carg03665 vs. Swiss-Prot
Match: sp|Q9LXK1|RFA3A_ARATH (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.5e-31
Identity = 63/107 (58.88%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSK 60
           MDTS+PS FV+  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANGEFK LF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of Carg03665 vs. Swiss-Prot
Match: sp|Q9SDK9|RFA3_ORYSJ (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-27
Identity = 55/106 (51.89%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTS P+ FV+ E+L+++VGRRVR V+Q Q E  G++ G+STD  Q+T+KG+    +S +
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VE+IGIA+ +++IRA+V T+FG++FD + FN LC+LANG+ K LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]

BLAST of Carg03665 vs. TrEMBL
Match: tr|A0A1S3B7E2|A0A1S3B7E2_CUCME (replication protein A 14 kDa subunit B OS=Cucumis melo OX=3656 GN=LOC103486618 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFV+AELLRLYVGRRVRAVIQV SEGNGVI GKSTDD+QITVKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFK LF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106

[Close]

BLAST of Carg03665 vs. TrEMBL
Match: tr|A0A0A0LGP0|A0A0A0LGP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777000 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFV+AELLRLYVGRRVRAVIQV SE NGV++GKSTDD+QITVKGSPPF LSKF
Sbjct: 40  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKF 99

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC  ANGEFKPLF+
Sbjct: 100 VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGEFKPLFI 145

[Close]

BLAST of Carg03665 vs. TrEMBL
Match: tr|A0A2P4H8N7|A0A2P4H8N7_QUESU (Abc transporter b family member 29, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_35091 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.4e-39
Identity = 81/106 (76.42%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFV+AELLRLY+GRRVRAVIQV     GV+ GKSTD++QI VKGSPP  LS F
Sbjct: 659 MDTSNPSVFVNAELLRLYIGRRVRAVIQVLRSDGGVVTGKSTDENQIIVKGSPPVPLSNF 718

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADT+KSIRA++W+NFG++FDT T+NQLCQLANGEFK LF+
Sbjct: 719 VEVIGIADTEKSIRAEIWSNFGNTFDTHTYNQLCQLANGEFKHLFL 764

[Close]

BLAST of Carg03665 vs. TrEMBL
Match: tr|A0A2I4HLD4|A0A2I4HLD4_9ROSI (replication protein A 14 kDa subunit B-like OS=Juglans regia OX=51240 GN=LOC109019188 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.1e-38
Identity = 80/106 (75.47%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNP+VFV+AELLRLY+GRRVRAVIQV     GV+ GKSTD++QI VKGSPP  LSKF
Sbjct: 1   MDTSNPAVFVNAELLRLYIGRRVRAVIQVLRSDGGVVMGKSTDENQIVVKGSPPAPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEV+GIAD++KSI  +VW+NFGDSFDT T+NQLCQLANGEFK LF+
Sbjct: 61  VEVVGIADSEKSIIVEVWSNFGDSFDTHTYNQLCQLANGEFKHLFL 106

[Close]

BLAST of Carg03665 vs. TrEMBL
Match: tr|A0A2P5A4K4|A0A2P5A4K4_9ROSA (Replication factor A protein OS=Trema orientalis OX=63057 GN=TorRG33x02_357840 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-37
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MDTSNPSVFVSAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNP+VFV+AELLRLYVGRRVRA+IQV    NG + GKSTDDSQI VKGSPP + + F
Sbjct: 1   MDTSNPAVFVNAELLRLYVGRRVRALIQVIRSENGAVVGKSTDDSQIVVKGSPPRAPTTF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIAD DKSIRA++WTNFGD+ DT  +NQLCQLANGEFK LF+
Sbjct: 61  VEVIGIADGDKSIRAEMWTNFGDAIDTHNYNQLCQLANGEFKHLFI 106

The following BLAST results are available for this feature:

BLAST of Carg03665 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935108.1	8.4e-52	99.06	replication protein A 14 kDa subunit B-like [Cucurbita moschata]	[more]
XP_022983164.1	3.2e-51	97.17	replication protein A 14 kDa subunit B-like [Cucurbita maxima]	[more]
XP_023528146.1	4.2e-51	97.17	replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022144611.1	4.6e-50	95.28	replication protein A 14 kDa subunit B [Momordica charantia]	[more]
XP_022943091.1	3.9e-49	93.40	replication protein A 14 kDa subunit B-like [Cucurbita moschata] >XP_023005729.1...	[more]

BLAST of Carg03665 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18590.1	4.3e-34	62.26	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G52630.1	5.3e-32	58.88	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of Carg03665 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NLG7\|RFA3B_ARATH	7.8e-33	62.26	Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ...	[more]
sp\|Q9LXK1\|RFA3A_ARATH	9.5e-31	58.88	Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ...	[more]
sp\|Q9SDK9\|RFA3_ORYSJ	1.3e-27	51.89	Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Carg03665 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7E2\|A0A1S3B7E2_CUCME	1.1e-47	92.45	replication protein A 14 kDa subunit B OS=Cucumis melo OX=3656 GN=LOC103486618 P...	[more]
tr\|A0A0A0LGP0\|A0A0A0LGP0_CUCSA	1.4e-47	90.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777000 PE=4 SV=1	[more]
tr\|A0A2P4H8N7\|A0A2P4H8N7_QUESU	5.4e-39	76.42	Abc transporter b family member 29, chloroplastic OS=Quercus suber OX=58331 GN=C...	[more]
tr\|A0A2I4HLD4\|A0A2I4HLD4_9ROSI	2.1e-38	75.47	replication protein A 14 kDa subunit B-like OS=Juglans regia OX=51240 GN=LOC1090...	[more]
tr\|A0A2P5A4K4\|A0A2P5A4K4_9ROSA	1.3e-37	75.47	Replication factor A protein OS=Trema orientalis OX=63057 GN=TorRG33x02_357840 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006310	DNA recombination
GO:0006260	DNA replication
GO:0006281	DNA repair

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR013970	Rfa2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03665-RA	Carg03665-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013970	Replication factor A protein 3	PFAM	PF08661	Rep_fac-A_3	coord: 1..99 e-value: 7.5E-21 score: 74.4
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 1..106 e-value: 2.2E-12 score: 48.8
None	No IPR available	PANTHER	PTHR31614	FAMILY NOT NAMED	coord: 1..106
None	No IPR available	PANTHER	PTHR31614:SF8	REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED	coord: 1..106
None	No IPR available	CDD	cd04479	RPA3	coord: 6..105 e-value: 8.39759E-22 score: 82.6961
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 5..105

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03665	Cla017684	Watermelon (97103) v1	carwmB0237
Carg03665	Csa3G777000	Cucumber (Chinese Long) v2	carcuB0276
Carg03665	MELO3C009479	Melon (DHL92) v3.5.1	carmeB0251
Carg03665	ClCG10G018900	Watermelon (Charleston Gray)	carwcgB0240
Carg03665	CSPI03G34990	Wild cucumber (PI 183967)	carcpiB0280
Carg03665	Cucsa.241220	Cucumber (Gy14) v1	carcgyB0294
Carg03665	CmaCh06G004800	Cucurbita maxima (Rimu)	carcmaB0350
Carg03665	CmoCh14G003110	Cucurbita moschata (Rifu)	carcmoB0347
Carg03665	CmoCh06G004810	Cucurbita moschata (Rifu)	carcmoB0351
Carg03665	Lsi03G018850	Bottle gourd (USVL1VR-Ls)	carlsiB225
Carg03665	Cp4.1LG08g09990	Cucurbita pepo (Zucchini)	carcpeB0354
Carg03665	Cp4.1LG03g00680	Cucurbita pepo (Zucchini)	carcpeB0353
Carg03665	CsGy3G032440	Cucumber (Gy14) v2	carcgybB0263
Carg03665	MELO3C009479.2	Melon (DHL92) v3.6.1	carmedB0261
Carg03665	CsaV3_3G037350	Cucumber (Chinese Long) v3	carcucB0279
Carg03665	Cla97C10G201920	Watermelon (97103) v2	carwmbB0254
Carg03665	Bhi11G001926	Wax gourd	carwgoB0322

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03665	Carg25877	Silver-seed gourd	carcarB290

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03665	Cucumber (Gy14) v1	carcgyB0291
Carg03665	Cucurbita maxima (Rimu)	carcmaB0343
Carg03665	Cucurbita maxima (Rimu)	carcmaB0345
Carg03665	Cucurbita maxima (Rimu)	carcmaB0348
Carg03665	Cucurbita maxima (Rimu)	carcmaB0351
Carg03665	Cucurbita moschata (Rifu)	carcmoB0348
Carg03665	Cucurbita moschata (Rifu)	carcmoB0349
Carg03665	Cucurbita moschata (Rifu)	carcmoB0352
Carg03665	Cucurbita pepo (Zucchini)	carcpeB0348
Carg03665	Cucurbita pepo (Zucchini)	carcpeB0350
Carg03665	Cucurbita pepo (Zucchini)	carcpeB0351
Carg03665	Wild cucumber (PI 183967)	carcpiB0282
Carg03665	Cucumber (Chinese Long) v2	carcuB0278
Carg03665	Cucumber (Chinese Long) v3	carcucB0280
Carg03665	Bottle gourd (USVL1VR-Ls)	carlsiB222
Carg03665	Bottle gourd (USVL1VR-Ls)	carlsiB223
Carg03665	Melon (DHL92) v3.5.1	carmeB0253
Carg03665	Melon (DHL92) v3.6.1	carmedB0263
Carg03665	Watermelon (Charleston Gray)	carwcgB0241
Carg03665	Watermelon (Charleston Gray)	carwcgB0242
Carg03665	Watermelon (97103) v1	carwmB0238
Carg03665	Watermelon (97103) v1	carwmB0239
Carg03665	Watermelon (97103) v2	carwmbB0255
Carg03665	Watermelon (97103) v2	carwmbB0256
Carg03665	Wax gourd	carwgoB0317
Carg03665	Wax gourd	carwgoB0327
Carg03665	Wax gourd	carwgoB0330
Carg03665	Silver-seed gourd	carcarB173
Carg03665	Silver-seed gourd	carcarB276
Carg03665	Silver-seed gourd	carcarB289
Carg03665	Silver-seed gourd	carcarB292