Cp4.1LG02g17010 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g17010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transcription initiation factor IIB
Location	Cp4.1LG02 : 12507503 .. 12508099 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAACGGCAGCAATGATTCGTCTCTTTCTCCTCTTTCTTCTCACGGTTTCCCTCCCAATCTTCTCCGATGCCCGCCCCTGCAAATCCCTCTTCGTTTCCTTTTCCGTTCACCGCCACCCAACCCTCGATTCCCGCGATCCCTTCTCCGAGATGGCCATTATCGTCGACATCACCGAGTTGAAATCCGCTGCATCTTCTTCTTCTTCTTCCGATTCCCTTTTCCGCCCCTTCGGTGACGAACTCCTCCGCTTGGATCTCCCTCGCGATAGGGCTTTTGTAGCCTCCGAACCCCACTCGCTTCAAGAACTCCCTTTGGGCCTCTCTTATGACTTCAGCTCCCTTCGTGATCGTACCAAGGATATCCTCAGCGTTGTTGTTGCTTTGCTCTTCGGCGTTGGCTGTGGCGCTCTCACTGCTGCCACCATGTATTTGGCCTACTCGTTGTGCTCCAGCCAATTTAGTCATCGCTCTTCTGTGTATGATGACCTCTGGGAGGAGGGTGATTTCAGTGATGATAACAAGGAGAATATTAAGAAGATGGGTTACGTCAAGATCCCCGAGGACGTTGCGCCGGTTAAATCAGTGGTGTAA

mRNA sequence

ATGGCGTCAACGGCAGCAATGATTCGTCTCTTTCTCCTCTTTCTTCTCACGGTTTCCCTCCCAATCTTCTCCGATGCCCGCCCCTGCAAATCCCTCTTCGTTTCCTTTTCCGTTCACCGCCACCCAACCCTCGATTCCCGCGATCCCTTCTCCGAGATGGCCATTATCGTCGACATCACCGAGTTGAAATCCGCTGCATCTTCTTCTTCTTCTTCCGATTCCCTTTTCCGCCCCTTCGGTGACGAACTCCTCCGCTTGGATCTCCCTCGCGATAGGGCTTTTGTAGCCTCCGAACCCCACTCGCTTCAAGAACTCCCTTTGGGCCTCTCTTATGACTTCAGCTCCCTTCGTGATCGTACCAAGGATATCCTCAGCGTTGTTGTTGCTTTGCTCTTCGGCGTTGGCTGTGGCGCTCTCACTGCTGCCACCATGTATTTGGCCTACTCGTTGTGCTCCAGCCAATTTAGTCATCGCTCTTCTGTGTATGATGACCTCTGGGAGGAGGGTGATTTCAGTGATGATAACAAGGAGAATATTAAGAAGATGGGTTACGTCAAGATCCCCGAGGACGTTGCGCCGGTTAAATCAGTGGTGTAA

Coding sequence (CDS)

ATGGCGTCAACGGCAGCAATGATTCGTCTCTTTCTCCTCTTTCTTCTCACGGTTTCCCTCCCAATCTTCTCCGATGCCCGCCCCTGCAAATCCCTCTTCGTTTCCTTTTCCGTTCACCGCCACCCAACCCTCGATTCCCGCGATCCCTTCTCCGAGATGGCCATTATCGTCGACATCACCGAGTTGAAATCCGCTGCATCTTCTTCTTCTTCTTCCGATTCCCTTTTCCGCCCCTTCGGTGACGAACTCCTCCGCTTGGATCTCCCTCGCGATAGGGCTTTTGTAGCCTCCGAACCCCACTCGCTTCAAGAACTCCCTTTGGGCCTCTCTTATGACTTCAGCTCCCTTCGTGATCGTACCAAGGATATCCTCAGCGTTGTTGTTGCTTTGCTCTTCGGCGTTGGCTGTGGCGCTCTCACTGCTGCCACCATGTATTTGGCCTACTCGTTGTGCTCCAGCCAATTTAGTCATCGCTCTTCTGTGTATGATGACCTCTGGGAGGAGGGTGATTTCAGTGATGATAACAAGGAGAATATTAAGAAGATGGGTTACGTCAAGATCCCCGAGGACGTTGCGCCGGTTAAATCAGTGGTGTAA

Protein sequence

MASTAAMIRLFLLFLLTVSLPIFSDARPCKSLFVSFSVHRHPTLDSRDPFSEMAIIVDITELKSAASSSSSSDSLFRPFGDELLRLDLPRDRAFVASEPHSLQELPLGLSYDFSSLRDRTKDILSVVVALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWEEGDFSDDNKENIKKMGYVKIPEDVAPVKSVV

Homology

[Close]

BLAST of Cp4.1LG02g17010 vs. TrEMBL
Match: A0A0A0L741_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G313200 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58
Identity = 134/191 (70.16%), Postives = 145/191 (75.92%), Query Frame = 1


Query: 10  LFLLFLLTVSLPIFSDARPCKSLFVSFSVHRHPTLDSRDPFSEMAIIVDITELKSAASSS 69
           LFLLFL T+S  I S ARPCKSLF+SFS+HRH TLDS  PFS+MAIIVDITE KS+ S S
Sbjct: 5   LFLLFLFTISFSIPSQARPCKSLFLSFSLHRHRTLDSPHPFSQMAIIVDITEFKSS-SFS 64

Query: 70  SSSDSLFRPFGD--ELLRLDLPRDRAFVASEPHSLQELPLGLSYDFSSLRDRTKDILSVV 129
           SS D LF    D  ++LR DLPR     AS  H          YDF+SLRDRTKDILSVV
Sbjct: 65  SSPDPLFPSVADPTDILRFDLPRPTPVSASTQH--------FPYDFTSLRDRTKDILSVV 124

Query: 130 VALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWE-EGDFSDDNKENIKKMGYVK 189
           VALLFGVGCGALTAATMYLAYSL + QF HRSSVYDD  E E D SDDNKENIKKMGY+ 
Sbjct: 125 VALLFGVGCGALTAATMYLAYSLFAGQFGHRSSVYDDFGEDEDDLSDDNKENIKKMGYIN 184

Query: 190 IPEDVAPVKSV 198
           IP+DVAPVKSV
Sbjct: 185 IPDDVAPVKSV 186

[Close]

BLAST of Cp4.1LG02g17010 vs. TrEMBL
Match: B9T415_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0509420 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 87/193 (45.08%), Postives = 114/193 (59.07%), Query Frame = 1


Query: 9   RLFLLFLLTVSLPIFSDARPCKSLFVS---FSVHR-HPTLDSRDPFSE-MAIIVDITELK 68
           +L LL  L  SL I   ARPCK+LF+S   FS+   +P  +S +P S  + I+ +IT+ +
Sbjct: 7   KLLLLLSLIASLSISVSARPCKTLFISSYTFSIRPLNPNPNSNNPSSGFVTIVTEITQKQ 66

Query: 69  SAASSSSSSDSLFRPFGDELLRLDLPRDRAFVASEPHSLQE----LPLGL---SYDFSSL 128
             +S        FR  GD     D    +  +  +    +E    LP GL   SYD +SL
Sbjct: 67  QRSSEVFLDPRFFRAVGD-----DNSESQQVIHQQQQQKEEGGVVLPFGLGLSSYDINSL 126

Query: 129 RDRTKDILSVVVALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWEEGDFSDDNK 188
           RDRTKDILSVVVALLFGVGCGALTAATMYL +SL S+++++    +DD   E D  +D  
Sbjct: 127 RDRTKDILSVVVALLFGVGCGALTAATMYLVWSLFSTRYNYHYGEFDD---EDDEDEDED 186

Query: 189 ENIKKMGYVKIPE 190
            + KKMGYVKI E
Sbjct: 187 VSPKKMGYVKISE 191

[Close]

BLAST of Cp4.1LG02g17010 vs. TrEMBL
Match: A0A067LHU8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07980 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.7e-25
Identity = 93/203 (45.81%), Postives = 115/203 (56.65%), Query Frame = 1


Query: 1   MASTAAMIRLFLLFLLTVSLPIFSDARPCKSLFV-SFSVHRHPTLDSRDPFSEMAIIVDI 60
           MAS++    L LLFLL   L I   ARPCK+LF+ S++    P   + +P S    +  +
Sbjct: 1   MASSSIPSLLLLLFLLVSPLSISVSARPCKTLFISSYTFSIKPLYPNPNP-SSAGFVTIV 60

Query: 61  TELKSAASSSSSSDSLFRPFGDELLRLDLPRDRAFVASEPHSLQE----LPLGL-SYDFS 120
           TE+    S SS          D  L   + R      SEP   QE     P GL SYD S
Sbjct: 61  TEISQQRSYSS----------DVFLDGKIFRSNDNSDSEPQKRQESSPVFPFGLSSYDMS 120

Query: 121 SLRDRTKDILSVVVALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWEEGDFSDD 180
           SLRDRTKDILSVVVALLFGVGCGALTAATMYL +SL S+++ +R   +D   E+ D  DD
Sbjct: 121 SLRDRTKDILSVVVALLFGVGCGALTAATMYLVWSLFSNRYDYRYEEFD--CEDEDEHDD 180

Query: 181 NKENIKKMGYVKIPEDVAPVKSV 198
                KK+GY+KIPE  +  K V
Sbjct: 181 LSP--KKVGYIKIPEVDSVAKQV 188

[Close]

BLAST of Cp4.1LG02g17010 vs. TrEMBL
Match: A9PCF6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s07670g PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.7e-25
Identity = 86/192 (44.79%), Postives = 109/192 (56.77%), Query Frame = 1


Query: 10  LFLLFLLTVSLPIFSDARPCKSLFVS-FSVHRHP-TLDSRDPFSEMAIIVDITELKSAAS 69
           +F LF+L  SL     ARPCK+LF+S +S+   P   +  +P S   I+ +I E  ++  
Sbjct: 7   IFTLFILLSSLSFSCSARPCKTLFISSYSLSIKPLNPNPNNPSSGFFIVTEIEETSTSTF 66

Query: 70  SSSSSDSLFRPFGDELLRLDLPRDRAFVASEPHS---LQEL-------PLGLSYDFSSLR 129
            S+  +  F PF        +P +    + E H     QE        P    YD SSLR
Sbjct: 67  HSNFFNRRFIPF--------IPNNNYEKSQEIHDKKGFQETAQVGSVWPGFGGYDLSSLR 126

Query: 130 DRTKDILSVVVALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWEEGDFSDDNKE 189
           DRTKDILSVVVALLFGVGCGALTAATMYL +S  S      S  +D     GDFSDD +E
Sbjct: 127 DRTKDILSVVVALLFGVGCGALTAATMYLVWSFFSPSQPRYSHYFD-----GDFSDDEEE 185

[Close]

BLAST of Cp4.1LG02g17010 vs. TrEMBL
Match: U5FJ16_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s01760g PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 85/190 (44.74%), Postives = 115/190 (60.53%), Query Frame = 1


Query: 10  LFLLFLLTVSLPIFSDARPCKSLFVS-FSVHR---HPTLDSRDPFSEMAIIVDITELKSA 69
           L  L +L   L   S ARPCK+LF+S +SV     +P  +  +P +  +  + +TE++ A
Sbjct: 7   LLSLSILLCFLSFSSSARPCKTLFISSYSVSYKPLNPYPNDPNPNNPSSGFLIVTEIQEA 66

Query: 70  ASSSSSSDSLFRPFGDELLRLDLPRDRAFVASEPHSLQELPLGL------SYDFSSLRDR 129
           + S+SS   + R F      + +     +  +   + +   +G       SYD SSLRDR
Sbjct: 67  SISASSLALIKRRF------IPVVSSNNYENTNKEATRRDEVGSVWDGFGSYDLSSLRDR 126

Query: 130 TKDILSVVVALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWEEGDFSDDNKENI 189
           TKDILSVVVALLFGVGCGALTAATMYL +SL    FS     YDD + +GDFSDD +E++
Sbjct: 127 TKDILSVVVALLFGVGCGALTAATMYLVWSL----FSPSQPRYDDYF-DGDFSDDEEEDL 185

[Close]

BLAST of Cp4.1LG02g17010 vs. TAIR10
Match: AT1G65720.1 (AT1G65720.1 unknown protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-17
Identity = 70/200 (35.00%), Postives = 109/200 (54.50%), Query Frame = 1


Query: 3   STAAMIRLFLLFLLTVSLPIFSDARPCKSLFVS-FSVH---RHPTLDSRDPFSEMAIIVD 62
           ++++ +R  +  +  +S+   + ARPCK+  +S +S+     +P L+S    +    +  
Sbjct: 2   TSSSYLRFAIAVVAFLSITTITTARPCKTFLISSYSLSITPENPNLESDFTSTRFVTVFT 61

Query: 63  ITELKSAASSSSSSDSLFRPFGDELLRLDLPRDRAFVASEPHSLQELPLGLSYDFSSLRD 122
           I  L               P       ++   ++  + S+    + LPL +S + +S RD
Sbjct: 62  IRRLN--------------PHHVVPFFVNRRHEKPQIQSD----RSLPL-ISDNINSFRD 121

Query: 123 RTKDILSVVVALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWEEGDFSDDNKE- 182
           RT+DILSVVVALLFGVGCGALTAATMYL ++L  ++ S     YD   EE D+ +D  + 
Sbjct: 122 RTRDILSVVVALLFGVGCGALTAATMYLVWALVVNRQS-----YDFEEEEDDYENDESDA 177

Query: 183 -NIKKMGYVKIPEDV-APVK 196
            ++KK+GYVKIP    APVK
Sbjct: 182 ASLKKLGYVKIPAPAPAPVK 177

[Close]

BLAST of Cp4.1LG02g17010 vs. NCBI nr
Match: gi|659114416|ref|XP_008457042.1| (PREDICTED: uncharacterized protein LOC103496817 isoform X1 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 3.4e-58
Identity = 134/192 (69.79%), Postives = 147/192 (76.56%), Query Frame = 1


Query: 10  LFLLFLLTVSLPIFSDARPCKSLFVSFSVHRHPTLDSRDPFSEMAIIVDITELKSAASSS 69
           LFLLFL T+S  I S ARPCKSLF+SFS+HRH TLDS  PFS+MAIIVDITE KS+ S S
Sbjct: 5   LFLLFLFTISFSIPSQARPCKSLFLSFSLHRHRTLDSPHPFSQMAIIVDITEFKSS-SFS 64

Query: 70  SSSDSLFRPFGD--ELLRLDLPRDRAFVASEPHSLQELPLGLSYDFSSLRDRTKDILSVV 129
           SSSD LF    D  ++LR DLPR     A+  H          YDF+SLRDRTKDILSVV
Sbjct: 65  SSSDPLFPSVADPTDILRFDLPRPTPVSATTQH--------FPYDFTSLRDRTKDILSVV 124

Query: 130 VALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWE-EGDFSDDNKENIKKMGYVK 189
           VALLFGVGCGALTAATMYLAYSL + QF HRSSVYDD  E + D SDDNKENIKKMGY+ 
Sbjct: 125 VALLFGVGCGALTAATMYLAYSLFAGQFGHRSSVYDDFGEDDDDLSDDNKENIKKMGYIN 184

Query: 190 IPEDVAPVKSVV 199
           IP+DVAPVKSVV
Sbjct: 185 IPDDVAPVKSVV 187

[Close]

BLAST of Cp4.1LG02g17010 vs. NCBI nr
Match: gi|449456204|ref|XP_004145840.1| (PREDICTED: uncharacterized protein LOC101219659 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 5.8e-58
Identity = 134/191 (70.16%), Postives = 145/191 (75.92%), Query Frame = 1


Query: 10  LFLLFLLTVSLPIFSDARPCKSLFVSFSVHRHPTLDSRDPFSEMAIIVDITELKSAASSS 69
           LFLLFL T+S  I S ARPCKSLF+SFS+HRH TLDS  PFS+MAIIVDITE KS+ S S
Sbjct: 5   LFLLFLFTISFSIPSQARPCKSLFLSFSLHRHRTLDSPHPFSQMAIIVDITEFKSS-SFS 64

Query: 70  SSSDSLFRPFGD--ELLRLDLPRDRAFVASEPHSLQELPLGLSYDFSSLRDRTKDILSVV 129
           SS D LF    D  ++LR DLPR     AS  H          YDF+SLRDRTKDILSVV
Sbjct: 65  SSPDPLFPSVADPTDILRFDLPRPTPVSASTQH--------FPYDFTSLRDRTKDILSVV 124

Query: 130 VALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWE-EGDFSDDNKENIKKMGYVK 189
           VALLFGVGCGALTAATMYLAYSL + QF HRSSVYDD  E E D SDDNKENIKKMGY+ 
Sbjct: 125 VALLFGVGCGALTAATMYLAYSLFAGQFGHRSSVYDDFGEDEDDLSDDNKENIKKMGYIN 184

Query: 190 IPEDVAPVKSV 198
           IP+DVAPVKSV
Sbjct: 185 IPDDVAPVKSV 186

[Close]

BLAST of Cp4.1LG02g17010 vs. NCBI nr
Match: gi|659114420|ref|XP_008457044.1| (PREDICTED: uncharacterized protein LOC103496817 isoform X3 [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 7.5e-58
Identity = 133/191 (69.63%), Postives = 146/191 (76.44%), Query Frame = 1


Query: 10  LFLLFLLTVSLPIFSDARPCKSLFVSFSVHRHPTLDSRDPFSEMAIIVDITELKSAASSS 69
           LFLLFL T+S  I S ARPCKSLF+SFS+HRH TLDS  PFS+MAIIVDITE KS+ S S
Sbjct: 5   LFLLFLFTISFSIPSQARPCKSLFLSFSLHRHRTLDSPHPFSQMAIIVDITEFKSS-SFS 64

Query: 70  SSSDSLFRPFGD--ELLRLDLPRDRAFVASEPHSLQELPLGLSYDFSSLRDRTKDILSVV 129
           SSSD LF    D  ++LR DLPR     A+  H          YDF+SLRDRTKDILSVV
Sbjct: 65  SSSDPLFPSVADPTDILRFDLPRPTPVSATTQH--------FPYDFTSLRDRTKDILSVV 124

Query: 130 VALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWE-EGDFSDDNKENIKKMGYVK 189
           VALLFGVGCGALTAATMYLAYSL + QF HRSSVYDD  E + D SDDNKENIKKMGY+ 
Sbjct: 125 VALLFGVGCGALTAATMYLAYSLFAGQFGHRSSVYDDFGEDDDDLSDDNKENIKKMGYIN 184

Query: 190 IPEDVAPVKSV 198
           IP+DVAPVKSV
Sbjct: 185 IPDDVAPVKSV 186

[Close]

BLAST of Cp4.1LG02g17010 vs. NCBI nr
Match: gi|659114418|ref|XP_008457043.1| (PREDICTED: uncharacterized protein LOC103496817 isoform X2 [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 7.5e-58
Identity = 133/191 (69.63%), Postives = 146/191 (76.44%), Query Frame = 1


Query: 10  LFLLFLLTVSLPIFSDARPCKSLFVSFSVHRHPTLDSRDPFSEMAIIVDITELKSAASSS 69
           LFLLFL T+S  I S ARPCKSLF+SFS+HRH TLDS  PFS+MAIIVDITE KS+ S S
Sbjct: 5   LFLLFLFTISFSIPSQARPCKSLFLSFSLHRHRTLDSPHPFSQMAIIVDITEFKSS-SFS 64

Query: 70  SSSDSLFRPFGD--ELLRLDLPRDRAFVASEPHSLQELPLGLSYDFSSLRDRTKDILSVV 129
           SSSD LF    D  ++LR DLPR     A+  H          YDF+SLRDRTKDILSVV
Sbjct: 65  SSSDPLFPSVADPTDILRFDLPRPTPVSATTQH--------FPYDFTSLRDRTKDILSVV 124

Query: 130 VALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWE-EGDFSDDNKENIKKMGYVK 189
           VALLFGVGCGALTAATMYLAYSL + QF HRSSVYDD  E + D SDDNKENIKKMGY+ 
Sbjct: 125 VALLFGVGCGALTAATMYLAYSLFAGQFGHRSSVYDDFGEDDDDLSDDNKENIKKMGYIN 184

Query: 190 IPEDVAPVKSV 198
           IP+DVAPVKSV
Sbjct: 185 IPDDVAPVKSV 186

[Close]

BLAST of Cp4.1LG02g17010 vs. NCBI nr
Match: gi|255584513|ref|XP_002532984.1| (PREDICTED: uncharacterized protein LOC8276598 [Ricinus communis])

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 87/193 (45.08%), Postives = 114/193 (59.07%), Query Frame = 1


Query: 9   RLFLLFLLTVSLPIFSDARPCKSLFVS---FSVHR-HPTLDSRDPFSE-MAIIVDITELK 68
           +L LL  L  SL I   ARPCK+LF+S   FS+   +P  +S +P S  + I+ +IT+ +
Sbjct: 7   KLLLLLSLIASLSISVSARPCKTLFISSYTFSIRPLNPNPNSNNPSSGFVTIVTEITQKQ 66

Query: 69  SAASSSSSSDSLFRPFGDELLRLDLPRDRAFVASEPHSLQE----LPLGL---SYDFSSL 128
             +S        FR  GD     D    +  +  +    +E    LP GL   SYD +SL
Sbjct: 67  QRSSEVFLDPRFFRAVGD-----DNSESQQVIHQQQQQKEEGGVVLPFGLGLSSYDINSL 126

Query: 129 RDRTKDILSVVVALLFGVGCGALTAATMYLAYSLCSSQFSHRSSVYDDLWEEGDFSDDNK 188
           RDRTKDILSVVVALLFGVGCGALTAATMYL +SL S+++++    +DD   E D  +D  
Sbjct: 127 RDRTKDILSVVVALLFGVGCGALTAATMYLVWSLFSTRYNYHYGEFDD---EDDEDEDED 186

Query: 189 ENIKKMGYVKIPE 190
            + KKMGYVKI E
Sbjct: 187 VSPKKMGYVKISE 191

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g17010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g17010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L741_CUCSA	4.0e-58	70.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G313200 PE=4 SV=1	[more]
B9T415_RICCO	1.5e-25	45.08	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0509420 PE=4 SV=1	[more]
A0A067LHU8_JATCU	7.7e-25	45.81	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07980 PE=4 SV=1	[more]
A9PCF6_POPTR	7.7e-25	44.79	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s07670g PE=2 SV=1	[more]
U5FJ16_POPTR	3.8e-24	44.74	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s01760g PE=4 SV=1	[more]

BLAST of Cp4.1LG02g17010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65720.1	2.4e-17	35.00	unknown protein	[more]

BLAST of Cp4.1LG02g17010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114416\|ref\|XP_008457042.1\|	3.4e-58	69.79	PREDICTED: uncharacterized protein LOC103496817 isoform X1 [Cucumis melo]	[more]
gi\|449456204\|ref\|XP_004145840.1\|	5.8e-58	70.16	PREDICTED: uncharacterized protein LOC101219659 [Cucumis sativus]	[more]
gi\|659114420\|ref\|XP_008457044.1\|	7.5e-58	69.63	PREDICTED: uncharacterized protein LOC103496817 isoform X3 [Cucumis melo]	[more]
gi\|659114418\|ref\|XP_008457043.1\|	7.5e-58	69.63	PREDICTED: uncharacterized protein LOC103496817 isoform X2 [Cucumis melo]	[more]
gi\|255584513\|ref\|XP_002532984.1\|	2.2e-25	45.08	PREDICTED: uncharacterized protein LOC8276598 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g17010.1	Cp4.1LG02g17010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35107	FAMILY NOT NAMED	coord: 1..198 score: 5.2
None	No IPR available	PANTHER	PTHR35107:SF2	SUBFAMILY NOT NAMED	coord: 1..198 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g17010	Cucsa.375350	Cucumber (Gy14) v1	cgycpeB0989
Cp4.1LG02g17010	CmaCh14G008350	Cucurbita maxima (Rimu)	cmacpeB279
Cp4.1LG02g17010	CmaCh01G003670	Cucurbita maxima (Rimu)	cmacpeB491
Cp4.1LG02g17010	CmoCh01G003850	Cucurbita moschata (Rifu)	cmocpeB449
Cp4.1LG02g17010	CmoCh14G008500	Cucurbita moschata (Rifu)	cmocpeB241
Cp4.1LG02g17010	Cla013202	Watermelon (97103) v1	cpewmB568
Cp4.1LG02g17010	Csa3G313200	Cucumber (Chinese Long) v2	cpecuB547
Cp4.1LG02g17010	MELO3C020251	Melon (DHL92) v3.5.1	cpemeB529
Cp4.1LG02g17010	ClCG05G011320	Watermelon (Charleston Gray)	cpewcgB518
Cp4.1LG02g17010	CSPI03G21390	Wild cucumber (PI 183967)	cpecpiB552
Cp4.1LG02g17010	Lsi05G003370	Bottle gourd (USVL1VR-Ls)	cpelsiB470
Cp4.1LG02g17010	MELO3C020251.2	Melon (DHL92) v3.6.1	cpemedB630
Cp4.1LG02g17010	CsaV3_3G021140	Cucumber (Chinese Long) v3	cpecucB0686
Cp4.1LG02g17010	Bhi01G001508	Wax gourd	cpewgoB0673
Cp4.1LG02g17010	CsGy3G020710	Cucumber (Gy14) v2	cgybcpeB380
Cp4.1LG02g17010	Carg07455	Silver-seed gourd	carcpeB1072
Cp4.1LG02g17010	Carg26924	Silver-seed gourd	carcpeB0720

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG02g17010	Cp4.1LG03g05910	Cucurbita pepo (Zucchini)	cpecpeB449

The following block(s) are covering this gene:

None