Cp4.1LG02g13070 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG02g13070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTransmembrane protein, putative
LocationCp4.1LG02 : 11311427 .. 11311831 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTCACATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCCCCTCATGGCCTGGTATACGAGAACCCGGTGGCGTTCTCTCCAATGGCATATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTAAACCTGCACAAGAAAGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGCAAAACCTGGTGCTTGA

mRNA sequence

ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTCACATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCCCCTCATGGCCTGGTATACGAGAACCCGGTGGCGTTCTCTCCAATGGCATATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTAAACCTGCACAAGAAAGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGCAAAACCTGGTGCTTGA

Coding sequence (CDS)

ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTCACATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCCCCTCATGGCCTGGTATACGAGAACCCGGTGGCGTTCTCTCCAATGGCATATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTAAACCTGCACAAGAAAGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGCAAAACCTGGTGCTTGA

Protein sequence

MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSKPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTRLANANRAMSAKPGA
BLAST of Cp4.1LG02g13070 vs. TrEMBL
Match: A0A0A0LV85_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G495260 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.6e-50
Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = 1

Query: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M + LTFLF L+SFTFLSI RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++P+ +DPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  ASKCSPLPLAAQLQSKPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQ+QS PA+ESKYSTT Q      G GGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRLANANRAMSA 131
           RTR ANANRAMSA
Sbjct: 121 RTRQANANRAMSA 133

BLAST of Cp4.1LG02g13070 vs. TrEMBL
Match: A0A061GY53_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042052 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34
Identity = 78/130 (60.00%), Postives = 95/130 (73.08%), Query Frame = 1

Query: 8   LFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPL 67
           L  LSS   +S+ RA+ RAPHG+ YENP+AFSP AY+FFHP+TR P+ ++PC AS CSPL
Sbjct: 46  LLLLSSLALVSLARAQDRAPHGIAYENPMAFSPSAYEFFHPKTREPDTQNPCAASNCSPL 105

Query: 68  PLAAQLQ-SKPAQESKYSTTTQKGE--GVGGILGIVFGITFAVFLAMGVYYVLRTRLANA 127
           P+AAQ+  +K  +ESK ST    G   G GGI G+VFG+ FAV LAMG YYVL TR ANA
Sbjct: 106 PMAAQVDTAKALEESKVSTQQISGHRLGAGGIAGVVFGLAFAVLLAMGAYYVLTTRRANA 165

Query: 128 NRAMSAKPGA 135
           NRA S +P A
Sbjct: 166 NRANSVQPDA 175

BLAST of Cp4.1LG02g13070 vs. TrEMBL
Match: A0A0D2QDG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G107100 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.2e-33
Identity = 75/130 (57.69%), Postives = 94/130 (72.31%), Query Frame = 1

Query: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M+  L+FL ++S    LSI   EGRAPHG+ YENPVAFSP AY+FFHP+ + P+ ++PC 
Sbjct: 1   MSPLLSFLLHVSCLALLSIANGEGRAPHGIAYENPVAFSPSAYEFFHPKAQVPDTKNPCA 60

Query: 61  ASKCSPLPLAAQL-QSKPAQESKYSTTTQKGE--GVGGILGIVFGITFAVFLAMGVYYVL 120
           AS CSPLP+AAQ+     A ESK ST  + G   G GGI+G+VFG+ FAV LAMGVYYVL
Sbjct: 61  ASSCSPLPIAAQMGDGTTALESKVSTQKESGHQLGAGGIVGLVFGLAFAVLLAMGVYYVL 120

Query: 121 RTRLANANRA 128
             R +NAN+A
Sbjct: 121 NIRRSNANKA 130

BLAST of Cp4.1LG02g13070 vs. TrEMBL
Match: U5GGS3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22050g PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 78/131 (59.54%), Postives = 91/131 (69.47%), Query Frame = 1

Query: 7   FLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGA-SKCS 66
           FLF LSS T L I RA+ RAPHGLVYE PVAFSP A +FFHP+T+ PN E+PC A S CS
Sbjct: 31  FLFCLSSLTILFIARAQDRAPHGLVYEKPVAFSPSAVEFFHPKTQEPNTENPCAASSSCS 90

Query: 67  PLPLAAQLQSKPAQESKYSTTTQKGE--GVGGILGIVFGITFAVFLAMGVYYVLRTRLAN 126
           P PLAAQL+     + K ST+ + G   G GGI G++ G+ FAV L MGVYYV  TR AN
Sbjct: 91  PFPLAAQLEDTDQTQGKISTSQRGGNQLGAGGIAGVILGLAFAVLLTMGVYYVTITRKAN 150

Query: 127 ANRAMSAKPGA 135
            NRA S +P A
Sbjct: 151 INRANSDQPNA 161

BLAST of Cp4.1LG02g13070 vs. TrEMBL
Match: F6GU05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02860 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-31
Identity = 75/134 (55.97%), Postives = 92/134 (68.66%), Query Frame = 1

Query: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M    +FL + S    LS+ RA+GRAPHGL YENP+AFSP A+DFFHP  + P+ ++PC 
Sbjct: 1   MNPAASFLLFFS-LALLSLARAQGRAPHGLAYENPMAFSPSAFDFFHPNGQKPSTQNPCA 60

Query: 61  ASKCSPLPLAAQLQSKPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120
           AS CSPLP+AAQ+++  A +SK S+      G GGI GIVFG  FAV LAMGVYYV  TR
Sbjct: 61  ASNCSPLPMAAQVEASLAHQSKASSNR---VGAGGIAGIVFGFVFAVLLAMGVYYVAVTR 120

Query: 121 LANANRAMSAKPGA 135
            AN  RA S +P A
Sbjct: 121 RANLTRANSVQPDA 130

BLAST of Cp4.1LG02g13070 vs. TAIR10
Match: AT2G28410.1 (AT2G28410.1 unknown protein)

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-20
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 1

Query: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAE-DPC 60
           M      +F+ SS    +   A+ RAPHGL YE PVAFSP A+DFFH +  +P+   +PC
Sbjct: 1   MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60

Query: 61  GASKCSPLPLAAQLQ--SKPAQES---KYSTTTQKGEGVGGILGIVFGITFAVFL 110
             S CSPLP+AA++Q  S  AQES     ST T+ G    G++GI+FG+ FAV +
Sbjct: 61  SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115

BLAST of Cp4.1LG02g13070 vs. TAIR10
Match: AT5G60650.1 (AT5G60650.1 unknown protein)

HSP 1 Score: 77.8 bits (190), Expect = 5.7e-15
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 1

Query: 4   TLTFLFYLSSFTFLSIVRAEGRAP-HGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGAS 63
           T + LF+ S  + L  V   G  P HG  Y NP AFSP AYDFFHP++   +  +P  +S
Sbjct: 5   THSLLFFFSCLSMLLCVSIAGSRPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNPPKSS 64

Query: 64  ----KCSPLPLAAQLQSKPAQESKYST-------TTQKGEGVGGILGIVFGITFAVFLAM 123
                 SP P    +    +Q SK S+       + ++ EG G  +G+V G++F  FL++
Sbjct: 65  PSPLSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIAFLSL 124

Query: 124 GVYYVLRTRLANANRAM 129
           G+Y+V++ + AN  R +
Sbjct: 125 GIYFVIKKQRANIIRTI 141

BLAST of Cp4.1LG02g13070 vs. NCBI nr
Match: gi|659115379|ref|XP_008457527.1| (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 2.1e-51
Identity = 107/133 (80.45%), Postives = 117/133 (87.97%), Query Frame = 1

Query: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M + LTFLF LSSFTFLS+ RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQLQSKPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQ+QS PA+ESKYSTT Q  +   G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRLANANRAMSA 131
           RTR ANANRAMSA
Sbjct: 121 RTRQANANRAMSA 133

BLAST of Cp4.1LG02g13070 vs. NCBI nr
Match: gi|778661360|ref|XP_011657962.1| (PREDICTED: uncharacterized protein LOC105435923 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 5.1e-50
Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = 1

Query: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M + LTFLF L+SFTFLSI RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++P+ +DPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  ASKCSPLPLAAQLQSKPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQ+QS PA+ESKYSTT Q      G GGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRLANANRAMSA 131
           RTR ANANRAMSA
Sbjct: 121 RTRQANANRAMSA 133

BLAST of Cp4.1LG02g13070 vs. NCBI nr
Match: gi|590590455|ref|XP_007016739.1| (Uncharacterized protein TCM_042052 [Theobroma cacao])

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-34
Identity = 78/130 (60.00%), Postives = 95/130 (73.08%), Query Frame = 1

Query: 8   LFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPL 67
           L  LSS   +S+ RA+ RAPHG+ YENP+AFSP AY+FFHP+TR P+ ++PC AS CSPL
Sbjct: 46  LLLLSSLALVSLARAQDRAPHGIAYENPMAFSPSAYEFFHPKTREPDTQNPCAASNCSPL 105

Query: 68  PLAAQLQ-SKPAQESKYSTTTQKGE--GVGGILGIVFGITFAVFLAMGVYYVLRTRLANA 127
           P+AAQ+  +K  +ESK ST    G   G GGI G+VFG+ FAV LAMG YYVL TR ANA
Sbjct: 106 PMAAQVDTAKALEESKVSTQQISGHRLGAGGIAGVVFGLAFAVLLAMGAYYVLTTRRANA 165

Query: 128 NRAMSAKPGA 135
           NRA S +P A
Sbjct: 166 NRANSVQPDA 175

BLAST of Cp4.1LG02g13070 vs. NCBI nr
Match: gi|657952768|ref|XP_008359212.1| (PREDICTED: uncharacterized protein LOC103422926 [Malus domestica])

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-33
Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 1

Query: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           MA  ++   + +S TFLS+  AE RAPHGL  ENP AFSP AY+FFHP +++PNA+DPC 
Sbjct: 1   MAYRVSIFLFFASLTFLSVAFAEERAPHGLAKENPTAFSPSAYNFFHPTSQNPNAKDPCV 60

Query: 61  ASKCSPLPLAAQLQSKPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
            S CSPLP+AAQ++S  A ES++S T+Q G    G GG+ GI+FG+ FAVF+AMGVYYVL
Sbjct: 61  ESNCSPLPVAAQVRSTEAHESRFS-TSQNGRARFGAGGVAGIMFGLAFAVFMAMGVYYVL 120

Query: 121 RTRLANANRAMSAKP 133
            TR AN +R  + KP
Sbjct: 121 VTRRANMSRTNTVKP 134

BLAST of Cp4.1LG02g13070 vs. NCBI nr
Match: gi|694382081|ref|XP_009367075.1| (PREDICTED: uncharacterized protein LOC103956771 [Pyrus x bretschneideri])

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-33
Identity = 75/134 (55.97%), Postives = 97/134 (72.39%), Query Frame = 1

Query: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           MA  ++   + +S TFLS+  AE RAPHGL  ENP+AFSP AY+FFHP +++PNA+DPC 
Sbjct: 1   MASRVSIFLFFASLTFLSVAFAEERAPHGLAKENPMAFSPSAYNFFHPTSQNPNAKDPCV 60

Query: 61  ASKCSPLPLAAQLQSKPAQESKYSTTTQKGE--GVGGILGIVFGITFAVFLAMGVYYVLR 120
            S CSPLPLAAQ++S  A ES++ST+  +    G  G+ GIVFG+ FAVF+AMGVYYVL 
Sbjct: 61  ESNCSPLPLAAQVRSTEAHESRFSTSQNRRARFGAAGVAGIVFGLAFAVFMAMGVYYVLV 120

Query: 121 TRLANANRAMSAKP 133
           TR AN +   + KP
Sbjct: 121 TRSANMSLTNTVKP 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LV85_CUCSA3.6e-5078.95Uncharacterized protein OS=Cucumis sativus GN=Csa_1G495260 PE=4 SV=1[more]
A0A061GY53_THECC1.2e-3460.00Uncharacterized protein OS=Theobroma cacao GN=TCM_042052 PE=4 SV=1[more]
A0A0D2QDG4_GOSRA5.2e-3357.69Uncharacterized protein OS=Gossypium raimondii GN=B456_009G107100 PE=4 SV=1[more]
U5GGS3_POPTR1.2e-3259.54Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22050g PE=4 SV=1[more]
F6GU05_VITVI2.8e-3155.97Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02860 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT2G28410.13.4e-2046.09 unknown protein[more]
AT5G60650.15.7e-1535.04 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659115379|ref|XP_008457527.1|2.1e-5180.45PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo][more]
gi|778661360|ref|XP_011657962.1|5.1e-5078.95PREDICTED: uncharacterized protein LOC105435923 [Cucumis sativus][more]
gi|590590455|ref|XP_007016739.1|1.8e-3460.00Uncharacterized protein TCM_042052 [Theobroma cacao][more]
gi|657952768|ref|XP_008359212.1|1.1e-3357.04PREDICTED: uncharacterized protein LOC103422926 [Malus domestica][more]
gi|694382081|ref|XP_009367075.1|4.3e-3355.97PREDICTED: uncharacterized protein LOC103956771 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g13070.1Cp4.1LG02g13070.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35718FAMILY NOT NAMEDcoord: 1..134
score: 1.3
NoneNo IPR availablePANTHERPTHR35718:SF1EXPRESSED PROTEINcoord: 1..134
score: 1.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g13070Cp4.1LG20g08730Cucurbita pepo (Zucchini)cpecpeB432