Carg21028 (gene) Silver-seed gourd

NameCarg21028
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane protein
LocationCucurbita_argyrosperma_scaffold_122 : 368832 .. 369245 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTTTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAACGCAAACCGAGCTATGTCAGCACAACCTAGTGTTTGA

mRNA sequence

ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTTTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAACGCAAACCGAGCTATGTCAGCACAACCTAGTGTTTGA

Coding sequence (CDS)

ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTTTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAACGCAAACCGAGCTATGTCAGCACAACCTAGTGTTTGA

Protein sequence

MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVLRTRQANANRAMSAQPSV
BLAST of Carg21028 vs. NCBI nr
Match: XP_008457527.1 (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 8.9e-62
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCLSSFTFLS+A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQVQSTPA+ESKYSTTIQ   HRVGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPS 137
           RTRQANANRAMS AQPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

BLAST of Carg21028 vs. NCBI nr
Match: XP_022158643.1 (uncharacterized protein LOC111025099 [Momordica charantia])

HSP 1 Score: 233.8 bits (595), Expect = 3.5e-58
Identity = 116/135 (85.93%), Postives = 124/135 (91.85%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MTQMLTFLFCLSS TFLS+A+AEGRAPHGLVYESP+AFSPMAYDFFHPS Q  NAKDPC 
Sbjct: 1   MTQMLTFLFCLSSSTFLSVARAEGRAPHGLVYESPLAFSPMAYDFFHPSAQNSNAKDPCA 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
           ASKCSPLPLAAQVQSTPA++SKYST +QKG H +GAGG+LGIV GI FAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAQQSKYSTAVQKGEHGLGAGGVLGIVLGIMFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQP 136
           RTRQANANRAMS QP
Sbjct: 121 RTRQANANRAMSTQP 135

BLAST of Carg21028 vs. NCBI nr
Match: XP_023524574.1 (uncharacterized protein LOC111788471 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 4.0e-54
Identity = 114/135 (84.44%), Postives = 122/135 (90.37%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           M Q LTFLF LSSFTFLSI +AEGRAPHGLVYE+PVAFSPMAYDFFHP T++PNA+DPCG
Sbjct: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
           ASKCSPLPLAAQ+QS PA+ESKYSTT QKG    G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQLQSKPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQP 136
           RTR ANANRAMSA+P
Sbjct: 121 RTRLANANRAMSAKP 132

BLAST of Carg21028 vs. NCBI nr
Match: XP_022949574.1 (uncharacterized protein LOC111452884 [Cucurbita moschata])

HSP 1 Score: 217.6 bits (553), Expect = 2.6e-53
Identity = 112/135 (82.96%), Postives = 121/135 (89.63%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           M Q LTFLF LSSF+FLSI +AEGRAPHGLVYE+PVAFSPMAYDFFHP T++PNA+DPCG
Sbjct: 1   MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
           ASKCSPLPLAAQ+QS PA+ESKYSTT QKG    G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQP 136
           RTR AN NRAMSA+P
Sbjct: 121 RTRLANTNRAMSAKP 132

BLAST of Carg21028 vs. NCBI nr
Match: XP_022998560.1 (uncharacterized protein LOC111493157 [Cucurbita maxima])

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 111/135 (82.22%), Postives = 119/135 (88.15%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           M + LTFLF LSSFTFLS   AEGRAPHGL YE+PVAFSPMAYDFFHP T++PNA+DPCG
Sbjct: 1   MAKTLTFLFYLSSFTFLSAVHAEGRAPHGLAYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
           ASKCSPLPLAAQ+QS PA+ESKYSTT QKG    G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQP 136
           RTR ANANRAMSA+P
Sbjct: 121 RTRLANANRAMSAKP 132

BLAST of Carg21028 vs. TAIR10
Match: AT2G28410.1 (unknown protein)

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-19
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAK-DPC 60
           MT     +F  SS    + A A+ RAPHGL YE+PVAFSP A+DFFH   + P+   +PC
Sbjct: 1   MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60

Query: 61  GASKCSPLPLAAQVQSTPAKESKYS-TTIQKGTHR-VGAGGILGIVFGITFAVFL 113
             S CSPLP+AA+VQ   AK  +    +I  GT   +   G++GI+FG+ FAV +
Sbjct: 61  SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115

BLAST of Carg21028 vs. TAIR10
Match: AT5G60650.1 (unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 4.9e-14
Identity = 51/143 (35.66%), Postives = 76/143 (53.15%), Query Frame = 0

Query: 1   MTQMLTFLF-CLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPC 60
           +T  L F F CLS    +SIA +  R  HG  Y +P AFSP AYDFFHP +   +  +P 
Sbjct: 4   LTHSLLFFFSCLSMLLCVSIAGS--RPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNP- 63

Query: 61  GASKCSPLPLA-------AQVQSTPAKESKYS----TTIQKGTHRVGAGGILGIVFGITF 120
              K SP PL+         +    ++ SK S    TT +      G G  +G+V G++F
Sbjct: 64  --PKSSPSPLSLXXXXXKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSF 123

Query: 121 AVFLAMGVYYVLRTRQANANRAM 132
             FL++G+Y+V++ ++AN  R +
Sbjct: 124 IAFLSLGIYFVIKKQRANIIRTI 141

BLAST of Carg21028 vs. TrEMBL
Match: tr|A0A1S3C6E2|A0A1S3C6E2_CUCME (uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.9e-62
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCLSSFTFLS+A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQVQSTPA+ESKYSTTIQ   HRVGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPS 137
           RTRQANANRAMS AQPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

BLAST of Carg21028 vs. TrEMBL
Match: tr|A0A0A0LV85|A0A0A0LV85_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.1e-43
Identity = 102/137 (74.45%), Postives = 106/137 (77.37%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCL+SFTFLSIA+A+GRAPHGLVYESPVAF                      
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
               SPLPLAAQVQSTPAKESKYSTTIQ   HRVGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  XXXXSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPS 137
           RTRQANANRAMS AQPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

BLAST of Carg21028 vs. TrEMBL
Match: tr|A0A1R3HAW4|A0A1R3HAW4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20504 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 7.7e-38
Identity = 85/135 (62.96%), Postives = 100/135 (74.07%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           M  +L  L CLS    +SIA  + RAPHG+ YESP+AFSP AY+FFHP TQ P  K PC 
Sbjct: 1   MNSILLLLSCLS--LLVSIAWGQDRAPHGIAYESPMAFSPSAYEFFHPKTQDPETKIPCA 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
           +S CSPLP+AAQV S  + +SK STT QK  +R+GAGGI GI+FG+ FAV LAMGVYYVL
Sbjct: 61  SSNCSPLPIAAQVDSAKSLDSKVSTTEQKSRNRLGAGGIAGIIFGLAFAVLLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQP 136
            TR+ANANRA S QP
Sbjct: 121 NTRRANANRANSVQP 133

BLAST of Carg21028 vs. TrEMBL
Match: tr|A0A1U8JED3|A0A1U8JED3_GOSHI (uncharacterized protein LOC107906223 OS=Gossypium hirsutum OX=3635 GN=LOC107906223 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.2e-36
Identity = 81/137 (59.12%), Postives = 102/137 (74.45%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           M+ +L+FL  +S    LSI   EGRAPHG+ YE+PVAFSP AY+FFHP  Q P+ K+PC 
Sbjct: 1   MSPLLSFLLHVSCLALLSIVNGEGRAPHGIAYENPVAFSPSAYEFFHPKAQVPDTKNPCA 60

Query: 61  ASKCSPLPLAAQV-QSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYV 120
           AS CSPLP+AAQ+   T A ESK ST  + G H++GAGGI+G+VFG+ FAV LAMGVYYV
Sbjct: 61  ASSCSPLPIAAQMDDGTTALESKVSTQKESG-HQLGAGGIVGLVFGLAFAVLLAMGVYYV 120

Query: 121 LRTRQANANRAMSAQPS 137
           L  R++NAN+A   QP+
Sbjct: 121 LNIRRSNANKANYVQPN 136

BLAST of Carg21028 vs. TrEMBL
Match: tr|A0A061GY53|A0A061GY53_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_042052 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-35
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 8   LFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGASKCSPL 67
           L  LSS   +S+A+A+ RAPHG+ YE+P+AFSP AY+FFHP T+ P+ ++PC AS CSPL
Sbjct: 46  LLLLSSLALVSLARAQDRAPHGIAYENPMAFSPSAYEFFHPKTREPDTQNPCAASNCSPL 105

Query: 68  PLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVLRTRQANA 127
           P+AAQV +  A E    +T Q   HR+GAGGI G+VFG+ FAV LAMG YYVL TR+ANA
Sbjct: 106 PMAAQVDTAKALEESKVSTQQISGHRLGAGGIAGVVFGLAFAVLLAMGAYYVLTTRRANA 165

Query: 128 NRAMSAQP 136
           NRA S QP
Sbjct: 166 NRANSVQP 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008457527.18.9e-6291.24PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo][more]
XP_022158643.13.5e-5885.93uncharacterized protein LOC111025099 [Momordica charantia][more]
XP_023524574.14.0e-5484.44uncharacterized protein LOC111788471 [Cucurbita pepo subsp. pepo][more]
XP_022949574.12.6e-5382.96uncharacterized protein LOC111452884 [Cucurbita moschata][more]
XP_022998560.11.3e-5282.22uncharacterized protein LOC111493157 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT2G28410.11.0e-1945.22unknown protein[more]
AT5G60650.14.9e-1435.66unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3C6E2|A0A1S3C6E2_CUCME5.9e-6291.24uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=... [more]
tr|A0A0A0LV85|A0A0A0LV85_CUCSA6.1e-4374.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1[more]
tr|A0A1R3HAW4|A0A1R3HAW4_COCAP7.7e-3862.96Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20504 PE=4 ... [more]
tr|A0A1U8JED3|A0A1U8JED3_GOSHI7.2e-3659.12uncharacterized protein LOC107906223 OS=Gossypium hirsutum OX=3635 GN=LOC1079062... [more]
tr|A0A061GY53|A0A061GY53_THECC1.2e-3560.16Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_042052 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21028-RACarg21028-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35718FAMILY NOT NAMEDcoord: 1..134