Cp4.1LG02g11520 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g11520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMitochondrial import inner membrane translocase subunit Tim10
LocationCp4.1LG02 : 10500789 .. 10502833 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCCGACTGGTCCAACGGCTGTGGACAAGGAACAGGTTGGTTTCTGTTTCTTTTATTCATTTTCTTTTCGTTTTTGCAAATTCATAGCCGTGGATAGGAATTCTATTGTTTGGATTGAGCATATTGAGCGTATCCTAGAGCAAGAGTGGAACCTGTGTTCTTATTCTGCTGTGTTAATTGGACAAATAGTTGTTATGGCAGTAAGGAGTTCGAAAAAAAAATTCATTACTTGAGTGAAAGACTCTCATTAGGCAGCTGGTTTTCAAGCATTAATCTTTTATTTTCTGTTTTAATCTATCCTGTTCTGAACTCTGCCCATTTAGAGTGATAAATGTGTTCAATTAGCTTTTGATGAATCTTTACCATGTAAATATATCAAAATATAGTTCATAAATTCATGATTATCATCACAATTTAATTTTGATTTTCTTTGCACTTGAGCAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAACTGTTCAACAAGTAGGTTTTATTACGCTTCTTTTATTTCACCTTTTTATATTCTAATAACTTCATTATGGCGCAAGATTCTATACATGTTGTTTAATTGAAATATCCGAGCTTCATGCGTTTACCTTCTTCACAGAATTTGACTTCTATGCCTTTCTTCTTTCGTCTTTCAGGCTTACACACTCGTGTTTTAACAAATGTGTCGATAAGAGGTAGGAGAGTTGTACTATACTTCTATCTTTGAATATTGCATATTTTCTAATCATAGAATTCAATTTCTTAAGTTGCAGTTTTGGCATTATATAGTTAATTTTAGCTCATTCTTTTCATTTAACAATTGCTATCTATTTTAGGTACAAGGAATCTGAGCTGAATATGGGTGAAAATAGCTGCATTGATCGCTGTGTTTCCAAGTATTGGCATGTAAGTTGATCATTGCCTTCAATGCTCTGTATGTCTGTTAGGTTATGAGATATGTGTTGATCAAATAGTACAGGAGCACTTGTATTCCATCTGATAAAAATTCAACTTATGTTCTGTTGTGCTCGAAAATTTGGAAGTATGAAAGCTTAGATTTATAAAGTTCGTTTTAAATCATGTCGTCGATATTCACCTGTCTCAAAAGATCACATTTCAGTAAAACATTTGATTTCGGAAGGAAATTTAAATTAGTTCATAGTCTTTTGGGGTAAGAAACACTTGCACTATTAGAGTGATTGGGAGATCTTTCGGTGAGGTGTGATCCCATGTTAGATATCATGTCTCTCTTCGGATTTCCATGTGTAATTTTTTTTTTTTTTTAAATTTACCCTTTTGGCCATATTTTGCATGACTGGAGCCCCTATTAGGTTAGTTGGGTTCTTGTTGACTTCGAGGCGTGAATGTATGTCGAATGAATGACACAAGGCGTTCCCTGATAAAACAAAAGCCATTAGTAATCTAATTCATCTTATTATGAGCCTGGATTTTGTACAGAGAGTTAAAGCACTCTCCCCTACATTCCAAACTACAGAAATTTCATTCAGCTATGTTCATTATATTTTTAACTCTGTGATGAAACTCCTGTATAGATCAATTGGCTTGCATATTGAATTGACATTTGGTGATTACAGGGCCATAGTTACTCCTTAGAAACCGTGTAAAGCTTTCTTTAATTACCCTATAGGCCTAATTTTTGTTGATTGGAACTCCTTACGTTAATCGAGCTGGTCTTGTAGTGTTTTTTCCCGGTATTCTCGTGTATTCTTTCATTTTATCTCAATGAAAACACACCTAAAAAAATGATTAAGGTTCATAGTCTATGGGATTATTTATTTTCCACCGTTGCATCCTATGAGTTAGAATGCTTCCTTCGACATACTCGTAAATTCGTTCCTGCATAGCTTTAACAATAACTGCTTCTTCGATAAGCCTATTTATGATAAAGAATGTCTAGACTTCCATTAGGGGTGATGTTTCTGTATTTAGTTATGGTATTAATTGGCAGTTTGCTATGCTTTCAGGTAACCAATTTAATCGGCCAGCTACTTGGCTCTGGTAGACCTCCCATGTGA

mRNA sequence

ATGGCTTCTCCGACTGGTCCAACGGCTGTGGACAAGGAACAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAACTGTTCAACAAGTACAAGGAATCTGAGCTGAATATGGGTGAAAATAGCTGCATTGATCGCTGTGTTTCCAAGTATTGGCATGTAACCAATTTAATCGGCCAGCTACTTGGCTCTGGTAGACCTCCCATGTGA

Coding sequence (CDS)

ATGGCTTCTCCGACTGGTCCAACGGCTGTGGACAAGGAACAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAACTGTTCAACAAGTACAAGGAATCTGAGCTGAATATGGGTGAAAATAGCTGCATTGATCGCTGTGTTTCCAAGTATTGGCATGTAACCAATTTAATCGGCCAGCTACTTGGCTCTGGTAGACCTCCCATGTGA

Protein sequence

MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
Homology
[Close]
BLAST of Cp4.1LG02g11520 vs. Swiss-Prot
Match: TIM10_ARATH (Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana GN=TIM10 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.1e-22
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 1 

Query: 1  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNK-------------YKESELNMGENSCID 60
          MASP  P  V KEQ F MA+ EMEYRVELFNK             YKE+ELNMGENSCID
Sbjct: 1  MASPI-PVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCID 60

Query: 61 RCVSKYWHVTNLIGQLLGSGRPPM 72
          RCVSKYW V  ++GQLL +G+PP+
Sbjct: 61 RCVSKYWQVNGMVGQLLSAGKPPV 83

[Close]
BLAST of Cp4.1LG02g11520 vs. TrEMBL
Match: A0A0B2SPQ0_GLYSO (Mitochondrial import inner membrane translocase subunit Tim10 OS=Glycine soja GN=glysoja_031195 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-30
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 1 

Query: 1  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLI 60
          MAS   P A DKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNL+
Sbjct: 1  MASNISPAAFDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLV 60

Query: 61 GQLLGSGRPPM 72
          GQLLGSGRPPM
Sbjct: 61 GQLLGSGRPPM 71

[Close]
BLAST of Cp4.1LG02g11520 vs. TrEMBL
Match: A0A0B2RE42_GLYSO (Mitochondrial import inner membrane translocase subunit Tim10 OS=Glycine soja GN=glysoja_010516 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-30
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 5  TGPTAVDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLIGQLL 64
          + P+A+DKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLIGQLL
Sbjct: 3  SSPSALDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLIGQLL 62

Query: 65 GSGRPPM 72
          GSGRPPM
Sbjct: 63 GSGRPPM 69

[Close]
BLAST of Cp4.1LG02g11520 vs. TrEMBL
Match: A0A0A0LVG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527890 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-28
Identity = 68/85 (80.00%), Postives = 69/85 (81.18%), Query Frame = 1 

Query: 1  MASPTG-PTAVDKEQIFGMAEKEMEYRVELFNK-------------YKESELNMGENSCI 60
          MASP   P+AVDKEQIFGMAEKEMEYRVELFNK             YKESELNMGENSCI
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLIGQLLGSGRPPM 72
          DRCVSKYWHVTNLIGQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]
BLAST of Cp4.1LG02g11520 vs. TrEMBL
Match: I1M502_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G339700 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.7e-28
Identity = 66/84 (78.57%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 1  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNK-------------YKESELNMGENSCID 60
          MAS   P+A+DKEQIFGMAEKEMEYRVELFNK             YKESELNMGENSCID
Sbjct: 1  MASNISPSALDKEQIFGMAEKEMEYRVELFNKMTQTCFKKCVDNRYKESELNMGENSCID 60

Query: 61 RCVSKYWHVTNLIGQLLGSGRPPM 72
          RCVSKYWHVTNLIGQLLGSGRPPM
Sbjct: 61 RCVSKYWHVTNLIGQLLGSGRPPM 84

[Close]
BLAST of Cp4.1LG02g11520 vs. TrEMBL
Match: W9QLK4_9ROSA (Mitochondrial import inner membrane translocase subunit Tim10 OS=Morus notabilis GN=L484_006038 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-28
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 1 

Query: 2  ASPTGPTAVDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLIG 61
          A+   P+A++K+QIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNL+G
Sbjct: 3  ANHNAPSALEKDQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLVG 62

Query: 62 QLLGSGRPPM 72
          QLLGSGRP M
Sbjct: 63 QLLGSGRPGM 72

[Close]
BLAST of Cp4.1LG02g11520 vs. TAIR10
Match: AT2G29530.3 (AT2G29530.3 Tim10/DDP family zinc finger protein)

HSP 1 Score: 90.9 bits (224), Expect = 3.4e-19
Identity = 50/108 (46.30%), Postives = 58/108 (53.70%), Query Frame = 1 

Query: 1   MASPTGPTAVDKEQIFGMAEKEMEYRVELF------------------------------ 60
           MASP  P  V KEQ F MA+ EMEYRVELF                              
Sbjct: 1   MASPI-PVGVTKEQAFSMAQTEMEYRVELFNNDIYKLEEYKFETADMSKILRLPELLAQT 60

Query: 61  -------NKYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM 72
                   +YKE+ELNMGENSCIDRCVSKYW V  ++GQLL +G+PP+
Sbjct: 61  CFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQLLSAGKPPV 107

[Close]
BLAST of Cp4.1LG02g11520 vs. NCBI nr
Match: gi|734433654|gb|KHN46895.1| (Mitochondrial import inner membrane translocase subunit Tim10 [Glycine soja])

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-30
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 1 

Query: 1  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLI 60
          MAS   P A DKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNL+
Sbjct: 1  MASNISPAAFDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLV 60

Query: 61 GQLLGSGRPPM 72
          GQLLGSGRPPM
Sbjct: 61 GQLLGSGRPPM 71

[Close]
BLAST of Cp4.1LG02g11520 vs. NCBI nr
Match: gi|734397383|gb|KHN30138.1| (Mitochondrial import inner membrane translocase subunit Tim10 [Glycine soja])

HSP 1 Score: 137.9 bits (346), Expect = 6.9e-30
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 

Query: 5  TGPTAVDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLIGQLL 64
          + P+A+DKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLIGQLL
Sbjct: 3  SSPSALDKEQIFGMAEKEMEYRVELFNKYKESELNMGENSCIDRCVSKYWHVTNLIGQLL 62

Query: 65 GSGRPPM 72
          GSGRPPM
Sbjct: 63 GSGRPPM 69

[Close]
BLAST of Cp4.1LG02g11520 vs. NCBI nr
Match: gi|694398282|ref|XP_009374324.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 134.4 bits (337), Expect = 7.7e-29
Identity = 65/84 (77.38%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 1  MASPTGPTAVDKEQIFGMAEKEMEYRVELFN-------------KYKESELNMGENSCID 60
          MA+P  PT +DKEQIFGMAEKEMEYRVELFN             KYKESELNMGENSCID
Sbjct: 1  MAAPNAPTVLDKEQIFGMAEKEMEYRVELFNKLTHTCFNKCVEKKYKESELNMGENSCID 60

Query: 61 RCVSKYWHVTNLIGQLLGSGRPPM 72
          RCVSKYWHVTNL+GQLLGSGRPPM
Sbjct: 61 RCVSKYWHVTNLVGQLLGSGRPPM 84

[Close]
BLAST of Cp4.1LG02g11520 vs. NCBI nr
Match: gi|657952048|ref|XP_008355615.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Malus domestica])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-28
Identity = 65/84 (77.38%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 1  MASPTGPTAVDKEQIFGMAEKEMEYRVELFN-------------KYKESELNMGENSCID 60
          MA+P  PT +DKEQIFGMAEKEMEYRVELFN             KYKESELNMGENSCID
Sbjct: 1  MAAPNEPTVLDKEQIFGMAEKEMEYRVELFNKLTHTCFNKCVEKKYKESELNMGENSCID 60

Query: 61 RCVSKYWHVTNLIGQLLGSGRPPM 72
          RCVSKYWHVTNL+GQLLGSGRPPM
Sbjct: 61 RCVSKYWHVTNLVGQLLGSGRPPM 84

[Close]
BLAST of Cp4.1LG02g11520 vs. NCBI nr
Match: gi|449455056|ref|XP_004145269.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-28
Identity = 68/85 (80.00%), Postives = 69/85 (81.18%), Query Frame = 1 

Query: 1  MASPTG-PTAVDKEQIFGMAEKEMEYRVELFNK-------------YKESELNMGENSCI 60
          MASP   P+AVDKEQIFGMAEKEMEYRVELFNK             YKESELNMGENSCI
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLIGQLLGSGRPPM 72
          DRCVSKYWHVTNLIGQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLIGQLLGSGRPPM 85

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g11520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TIM10_ARATH9.1e-2261.90Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis tha... [more]
BLAST of Cp4.1LG02g11520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2SPQ0_GLYSO1.3e-3091.55Mitochondrial import inner membrane translocase subunit Tim10 OS=Glycine soja GN... [more]
A0A0B2RE42_GLYSO4.8e-3094.03Mitochondrial import inner membrane translocase subunit Tim10 OS=Glycine soja GN... [more]
A0A0A0LVG1_CUCSA2.0e-2880.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527890 PE=3 SV=1[more]
I1M502_SOYBN2.7e-2878.57Uncharacterized protein OS=Glycine max GN=GLYMA_13G339700 PE=3 SV=1[more]
W9QLK4_9ROSA3.5e-2885.71Mitochondrial import inner membrane translocase subunit Tim10 OS=Morus notabilis... [more]
BLAST of Cp4.1LG02g11520 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G29530.33.4e-1946.30 Tim10/DDP family zinc finger protein[more]
BLAST of Cp4.1LG02g11520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|734433654|gb|KHN46895.1|1.8e-3091.55Mitochondrial import inner membrane translocase subunit Tim10 [Glycine soja][more]
gi|734397383|gb|KHN30138.1|6.9e-3094.03Mitochondrial import inner membrane translocase subunit Tim10 [Glycine soja][more]
gi|694398282|ref|XP_009374324.1|7.7e-2977.38PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 isoform... [more]
gi|657952048|ref|XP_008355615.1|1.3e-2877.38PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Malus ... [more]
gi|449455056|ref|XP_004145269.1|2.9e-2880.00PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Cucumi... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045039 protein import into mitochondrial inner membrane
biological_process GO:0009853 photorespiration
biological_process GO:0001510 RNA methylation
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005758 mitochondrial intermembrane space
cellular_component GO:0042721 mitochondrial inner membrane protein insertion complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g11520.1Cp4.1LG02g11520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g11520Cucsa.146720Cucumber (Gy14) v1cgycpeB0391
Cp4.1LG02g11520CmaCh13G000940Cucurbita maxima (Rimu)cmacpeB241
Cp4.1LG02g11520CmaCh01G006370Cucurbita maxima (Rimu)cmacpeB492
Cp4.1LG02g11520CmoCh01G006690Cucurbita moschata (Rifu)cmocpeB446
Cp4.1LG02g11520CmoCh13G000900Cucurbita moschata (Rifu)cmocpeB207
Cp4.1LG02g11520Cla008196Watermelon (97103) v1cpewmB549
Cp4.1LG02g11520Csa1G527890Cucumber (Chinese Long) v2cpecuB529
Cp4.1LG02g11520MELO3C020586Melon (DHL92) v3.5.1cpemeB492
Cp4.1LG02g11520ClCG03G001090Watermelon (Charleston Gray)cpewcgB501
Cp4.1LG02g11520CSPI01G23550Wild cucumber (PI 183967)cpecpiB531
Cp4.1LG02g11520Lsi02G013170Bottle gourd (USVL1VR-Ls)cpelsiB441
Cp4.1LG02g11520MELO3C020586.2Melon (DHL92) v3.6.1cpemedB584
Cp4.1LG02g11520CsaV3_1G035840Cucumber (Chinese Long) v3cpecucB0666
Cp4.1LG02g11520Bhi08G000470Wax gourdcpewgoB0705
Cp4.1LG02g11520CsGy1G023010Cucumber (Gy14) v2cgybcpeB091
Cp4.1LG02g11520Carg12406Silver-seed gourdcarcpeB0623
Cp4.1LG02g11520Carg20627Silver-seed gourdcarcpeB0533
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g11520Cucumber (Gy14) v2cgybcpeB100
Cp4.1LG02g11520Wax gourdcpewgoB0701
Cp4.1LG02g11520Cucurbita pepo (Zucchini)cpecpeB435
Cp4.1LG02g11520Cucurbita pepo (Zucchini)cpecpeB448
Cp4.1LG02g11520Cucumber (Gy14) v1cgycpeB0390
Cp4.1LG02g11520Cucurbita moschata (Rifu)cmocpeB211
Cp4.1LG02g11520Cucurbita moschata (Rifu)cmocpeB451
Cp4.1LG02g11520Wild cucumber (PI 183967)cpecpiB537
Cp4.1LG02g11520Cucumber (Chinese Long) v2cpecuB535