Cp4.1LG02g10900 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g10900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S9, putative
Location	Cp4.1LG02 : 9093557 .. 9097737 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCACGTCTCTTTCTATAGGAACTGTAAGTAGAAAACTCCGATGCATATCCATTCTCATCTAATTTGTTCTTCAAAGATCCGTCGTGTATGTTTTCTTTTTCATTATCAATTTTTTCGAACTTCTGTTTGGATTCCTTTTCGTTGTTTCTTCGATTGGGTTCTCCGATTGTGTTTCGCATACATTATGCAATTTTGTTGATCTAGTAGCTGGAAGATTTCTGAGGATTTAATTCGTTTTACTTGAATATTGGAACTCTTTTTGTGAGCTGTTGATGTTGGCTTCACTTGTTGGATCGTTGCGCATGTTGTAGAATTGGTGACATTGGGTTTAAAGGAGTTTTGATGCTTGACCATCTTATCTCAGCTTTTTCTTTTTTCTTTTTCATAGTTTTGTTCACTGCATTTTGTGGAGATTAGTATATGATATAGTTCATCTTATGTGACAACTTATAAAACGTAATGCGTCTTCTTGGTGTTTTTGCTGAAAGCGTAGATAATTGTATTTTGGGTTTTATCTAAATGTAGATGGGAAGACTTTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTTTGGATGCAGAGTTGAAGTTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTGTGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGGATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATTTTTGAGGGAGAGGCTCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCAATCCATCATGCTAGAGTGCTCATCAGGCANGGGCGCTCAACAAGGTAACCTGTAACGGCCTAGATCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCTCCTCAAGACTTTAAAACGCGTCTGCTAGGGGAAGGTTTCGACACCCTTAAGAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGGGACATCACATAACCTAACCATCAATCACAAGTATCCACTTCGATTGTAGACTGATTCACCCTAATCAATAAACGCGAGATACTTCGAGATTACTCTCACTTGTCCTAACCTATCATATAATGTGGGGATTGGTTGTCAATCTATGTTATGATATCTCTGTAAATGTGAACTGGCCTAATTGAAAACATGAAACTTAACTACTCATCATGACGATACGACCAAACTTTGAAACACGATTATTTCAATATTTAAAGAAATGAAAGAAATATGATTGTTTTAGGTGACTAGAAATGAACGTCCAAAAAAGATAGAGATATGTATTCTGTAGAAATATGAAGTTTTTATATAGTGATAAACAACATCGAGATGTTAGCAGCAACGTCGATATACTGCCCTTTCATACAAGGGAAGACATTATAGTGTCGAGATGCACTCATAAAAGATTTAGACACTTCGAATAGAACAAAGAGGGCTAGTGTTTTAAGCATTGAGATACTTTGAGCGTCCAACACAACATCGACGAGCGATATGCAACGTTGCACGAAGTGTGCATTTCATTGGCTTGAAAGGTTGCATGCACAATGGTGAGATGCCCAAAGTAGCTTCTCAATGCTTCCTCCTTGGAATTTTTATTAATGTTCTAAATTTAAAAAAAAAAAAAAAAAAAAAAAATCTTTATTATTAGCGGTATATAAAATATTTATCTTTTAATTTAAAAAAAAATTTTAAAAAAATTCTAATTGTTATTAATATCTCAGGCCCAACTTTTCACTCTAGCAGCCCAACCCACGGCCCAACCCACGGCCCAACTTTAATTTATTAAGAAAAAAAAAAGAAAAAAAGAAAAAGAAAACATGAAAACGATAGTGTAAAAACCCTAGCCGCTTCTCTAACCCTCTTTTGCTTCAGGGGTGCCTCTCTTCTCCTCTCCTTTGCATTCTAGACCATTGAGTTAGTGAAGACGTAGCAGAGAAGAGATCATGGTGCACGTCTCTTTCTATAGGAACTGTAAGTAGAAAACTCCGATGCATATCCATTCTCATCTAATTTGTTCTTCAAAGATCCGTCGTGTATGTTTTCTTTTTCATTATCAATTTTTTCGAACTTCTGTTTGGATTCCTTTTCGTTGTTTCTTCGATTGGGTTCTCCGATTGTGTTTCGCATACATTATGCAATTTTGTTGATCTAGTAGCTGGAAGATTTCTGAGGATTTAATTCGTTTTACTTGAATATTGGAACTCTTTTTGTGAGCTGTTGATGTTGGCTTCACTTGTTGGATCGTTGCGCATGTTGTAGAATTGGTGACATTGGGTTTAAAGGAGTTTTGATGCTTGACCATCTTATCTCAGCTTTTTCTTTTTTCTTTTTCATAGTTTTGTTCACTGCATTTTGTGGAGATTAGTATATGATATAGTTCATCTTATGTGACAACTTATAAAACGTAATGCGTCTTCTTGGTGTTTTTGCTGAAAGCGTAGATAATTGTATTTTGGGTTTTATCTAAATGTAGATGGGAAGACTTTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTTTGGATGCAGAGTTGAAGTTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTGTGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGGATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATTTTTGAGGGAGAGGCTCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCAATCCATCATGCTAGAGTGCTCATCAGGCAAAAGCATATAAGGTAGAGTGACAGAGTCATTATTCATACTCTCTAATATCTTTCCTTATTATGCATACCAATAACATTTTTTCCTTCCATGAGCTATTCTCATTTGTTCTTACATCGTCGTACAAAATTCTTAGTGCTAGATGGTCAACTTTCTATATTTGTATTCAGAGGATTAAAAGTTGTTGTGCAGCTTTGCAAAATAATAAGTTCATTATTGTCGGGTAGTTTTGGCTTGGCTAAGTGTACATTACAAGAAAAATTTGTAGCGTCTTCATGGGCAAAAAGTCTGCCATGTTTATTACAAGAGAAATTTCTCCCTGCCCAAAATTATTATATTTAGGAATAACATAGCAATGCCTGAGGAAAAAGCCAAAGGCATGCTTTGCGAGCAATATTTGTCAACTTTTTTTTTACCCAAGTGCTCGAATGACGTTTAAAAGAAGTCGAGTTGAATTATCACTGTGATATACGATTAAACACCTTTTATGCAAGTGTGTATACTTCGAGGTGCTTTTGATGTAATTCGATTAAACACCTGTGTATATTTCAAAGTGCTTTTGATGTAATTTGACTCGTAAGTACACTCTTCCTTTATTGTGGATGTGAAGTTTTTGTTAATATCTGTCACATTTCTCGTGTCTTCTTTAGGGTTGGAAGGCAGGTCGTGAACATCCCTTCTTTCATGGTGAGGGTCGATTCCCAGAAGCACATAGACTTCTCTCTTACAAGTCCGTTTGGAGGCGGGCGTCCTGGAAGGGTGAAAAGAAGGAATCAGAAGGCAGCTGCAAAGAAGGCTGCTGGAGGAGATGGAGATGAAGAAGATGAGGATTGAGTTATCGACTGAGAAATAATGAGATTAGCCCTCAATATCTATATCTTTTATCTATCAGAGAGAATATTTCATCTTTTTAGAAGTTTTGCTTTAAAGTACTTTGAATTAGAAAACTTGTCTGTTATTATTATTGGTTTTTTGTCATGAGAATTAGCGTTTAACCTATTTGGTTTTAGTTGCCACAGTTTTCTGCATCACTTTGAACCACTTTGTTTTCCTCAATACTCCAATGCATTATGAATCTATTGAGTTGATTTAATCTAATTCGGGTCGCAGCACAGCTTATTATATTCTGGAATCTGACCATTTATAAAACTTTGTAAAGGCTTATATATATACATGTGTGTGTGTGGTTGAAAGATTTAGTGATATAGGCTTATATATATATATATGGTATGT

mRNA sequence

ATGGTGCACGTCTCTTTCTATAGGAACTATGGGAAGACTTTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTTTGGATGCAGAGTTGAAGTTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTGTGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGGATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATTTTTGAGGGAGAGGCTCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGATGGGAAGACTTTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTTTGGATGCAGAGTTGAAGTTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTGTGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGGATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATTTTTGAGGGAGAGGCTCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCAATCCATCATGCTAGAGTGCTCATCAGGCAAAAGCATATAAGGGTTGGAAGGCAGGTCGTGAACATCCCTTCTTTCATGGTGAGGGTCGATTCCCAGAAGCACATAGACTTCTCTCTTACAAGTCCGTTTGGAGGCGGGCGTCCTGGAAGGGTGAAAAGAAGGAATCAGAAGGCAGCTGCAAAGAAGGCTGCTGGAGGAGATGGAGATGAAGAAGATGAGGATTGAGTTATCGACTGAGAAATAATGAGATTAGCCCTCAATATCTATATCTTTTATCTATCAGAGAGAATATTTCATCTTTTTAGAAGTTTTGCTTTAAAGTACTTTGAATTAGAAAACTTGTCTGTTATTATTATTGGTTTTTTGTCATGAGAATTAGCGTTTAACCTATTTGGTTTTAGTTGCCACAGTTTTCTGCATCACTTTGAACCACTTTGTTTTCCTCAATACTCCAATGCATTATGAATCTATTGAGTTGATTTAATCTAATTCGGGTCGCAGCACAGCTTATTATATTCTGGAATCTGACCATTTATAAAACTTTGTAAAGGCTTATATATATACATGTGTGTGTGTGGTTGAAAGATTTAGTGATATAGGCTTATATATATATATATGGTATGT

Coding sequence (CDS)

ATGGTGCACGTCTCTTTCTATAGGAACTATGGGAAGACTTTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTTTGGATGCAGAGTTGAAGTTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTGTGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGGATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATTTTTGAGGGAGAGGCTCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGATGGGAAGACTTTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTTTGGATGCAGAGTTGAAGTTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTGTGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGGATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATTTTTGAGGGAGAGGCTCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCAATCCATCATGCTAGAGTGCTCATCAGGCAAAAGCATATAAGGGTTGGAAGGCAGGTCGTGAACATCCCTTCTTTCATGGTGAGGGTCGATTCCCAGAAGCACATAGACTTCTCTCTTACAAGTCCGTTTGGAGGCGGGCGTCCTGGAAGGGTGAAAAGAAGGAATCAGAAGGCAGCTGCAAAGAAGGCTGCTGGAGGAGATGGAGATGAAGAAGATGAGGATTGA

Protein sequence

MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGGDGDEEDED

Homology

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BLAST of Cp4.1LG02g10900 vs. Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.0e-93
Identity = 172/191 (90.05%), Postives = 186/191 (97.38%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR LLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKRRN++A AKKA
Sbjct: 127 ARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKA 186

Query: 296 AGGDGDEEDED 307
           +GGDGDE+DE+
Sbjct: 187 SGGDGDEDDEE 197

[Close]

BLAST of Cp4.1LG02g10900 vs. Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.1e-87
Identity = 165/192 (85.94%), Postives = 184/192 (95.83%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR LLTLDE
Sbjct: 7   YRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           K+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH
Sbjct: 67  KSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           +RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKRRN+K+A+KKA
Sbjct: 127 SRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKA 186

Query: 296 AGG---DGDEED 305
           +GG   DGD+E+
Sbjct: 187 SGGGDADGDDEE 198

[Close]

BLAST of Cp4.1LG02g10900 vs. Swiss-Prot
Match: RS9_PODAS (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 3.0e-69
Identity = 138/191 (72.25%), Postives = 163/191 (85.34%), Query Frame = 1


Query: 117 KSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEK 176
           +S  KT K PRRP+E  RLD+ELKLVGEYGLR KRE+WRV   LS+IR  AR LLTLDEK
Sbjct: 4   RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63

Query: 177 NPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 236
           +P+R+FEG AL+RR+ R G+LDES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHA
Sbjct: 64  DPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHA 123

Query: 237 RVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAA 296
           RVLIRQ+HIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSPFGGGRPGRV+R+     AK A 
Sbjct: 124 RVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKK----AKAAE 183

Query: 297 GGDGD-EEDED 307
           GGDGD EEDE+
Sbjct: 184 GGDGDAEEDEE 190

[Close]

BLAST of Cp4.1LG02g10900 vs. Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.5e-68
Identity = 131/184 (71.20%), Postives = 155/184 (84.24%), Query Frame = 1


Query: 121 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 180
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 181 IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 240
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 241 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGGDG 300
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKR+N K     A  GD 
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDD 190

Query: 301 DEED 305
           +EED
Sbjct: 191 EEED 194

[Close]

BLAST of Cp4.1LG02g10900 vs. Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 260.4 bits (664), Expect = 2.5e-68
Identity = 131/184 (71.20%), Postives = 155/184 (84.24%), Query Frame = 1


Query: 121 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 180
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 181 IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 240
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 241 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGGDG 300
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKR+N K     A  GD 
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDD 190

Query: 301 DEED 305
           +EED
Sbjct: 191 EEED 194

[Close]

BLAST of Cp4.1LG02g10900 vs. TrEMBL
Match: W9QQ56_9ROSA (40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_005300 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.7e-98
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 1


Query: 119 DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 178
           DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP
Sbjct: 84  DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 143

Query: 179 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 238
           RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV
Sbjct: 144 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 203

Query: 239 LIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG 298
           LIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG
Sbjct: 204 LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG 263

Query: 299 DGDEEDED 307
           DGDEEDED
Sbjct: 264 DGDEEDED 271

[Close]

BLAST of Cp4.1LG02g10900 vs. TrEMBL
Match: A0A0A0KSN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 1.0e-97
Identity = 186/191 (97.38%), Postives = 190/191 (99.48%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKA
Sbjct: 127 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 186

Query: 296 AGGDGDEEDED 307
           AGGDGDEEDED
Sbjct: 187 AGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG02g10900 vs. TrEMBL
Match: D7FBA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.7e-95
Identity = 181/191 (94.76%), Postives = 188/191 (98.43%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARMLLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARMLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQ+HIRVGRQVVNIPSF+VR+DSQKHIDFSLTSP GGGRPGRVKR+NQKAAAKKA
Sbjct: 127 ARVLIRQRHIRVGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKNQKAAAKKA 186

Query: 296 AGGDGDEEDED 307
           AGGDGDEEDED
Sbjct: 187 AGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG02g10900 vs. TrEMBL
Match: W9QV98_9ROSA (40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.7e-95
Identity = 182/191 (95.29%), Postives = 189/191 (98.95%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNR+GLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRHGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKA
Sbjct: 127 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 186

Query: 296 AGGDGDEEDED 307
           AGGDGD ++ED
Sbjct: 187 AGGDGDGDEED 197

[Close]

BLAST of Cp4.1LG02g10900 vs. TrEMBL
Match: A0A059ARY5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 4.9e-95
Identity = 180/191 (94.24%), Postives = 188/191 (98.43%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARMLLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARMLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+N KAA+KKA
Sbjct: 127 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNTKAASKKA 186

Query: 296 AGGDGDEEDED 307
           +GGDG+EEDED
Sbjct: 187 SGGDGEEEDED 197

[Close]

BLAST of Cp4.1LG02g10900 vs. TAIR10
Match: AT5G39850.1 (AT5G39850.1 Ribosomal protein S4)

HSP 1 Score: 344.7 bits (883), Expect = 5.7e-95
Identity = 172/191 (90.05%), Postives = 186/191 (97.38%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR LLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKRRN++A AKKA
Sbjct: 127 ARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKA 186

Query: 296 AGGDGDEEDED 307
           +GGDGDE+DE+
Sbjct: 187 SGGDGDEDDEE 197

[Close]

BLAST of Cp4.1LG02g10900 vs. TAIR10
Match: AT5G15200.1 (AT5G15200.1 Ribosomal protein S4)

HSP 1 Score: 324.7 bits (831), Expect = 6.1e-89
Identity = 165/192 (85.94%), Postives = 184/192 (95.83%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR LLTLDE
Sbjct: 7   YRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           K+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH
Sbjct: 67  KSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           +RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKRRN+K+A+KKA
Sbjct: 127 SRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKA 186

Query: 296 AGG---DGDEED 305
           +GG   DGD+E+
Sbjct: 187 SGGGDADGDDEE 198

[Close]

BLAST of Cp4.1LG02g10900 vs. NCBI nr
Match: gi|703082817|ref|XP_010092050.1| (40S ribosomal protein S9-2 [Morus notabilis])

HSP 1 Score: 365.9 bits (938), Expect = 6.8e-98
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 1


Query: 119 DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 178
           DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP
Sbjct: 84  DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 143

Query: 179 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 238
           RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV
Sbjct: 144 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 203

Query: 239 LIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG 298
           LIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG
Sbjct: 204 LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG 263

Query: 299 DGDEEDED 307
           DGDEEDED
Sbjct: 264 DGDEEDED 271

[Close]

BLAST of Cp4.1LG02g10900 vs. NCBI nr
Match: gi|449434792|ref|XP_004135180.1| (PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus])

HSP 1 Score: 364.8 bits (935), Expect = 1.5e-97
Identity = 186/191 (97.38%), Postives = 190/191 (99.48%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKA
Sbjct: 127 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 186

Query: 296 AGGDGDEEDED 307
           AGGDGDEEDED
Sbjct: 187 AGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG02g10900 vs. NCBI nr
Match: gi|719965609|ref|XP_010256989.1| (PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera])

HSP 1 Score: 361.3 bits (926), Expect = 1.7e-96
Identity = 184/191 (96.34%), Postives = 189/191 (98.95%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKR+NQKAAAKKA
Sbjct: 127 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQKAAAKKA 186

Query: 296 AGGDGDEEDED 307
           AGGDGDEEDED
Sbjct: 187 AGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG02g10900 vs. NCBI nr
Match: gi|1009132749|ref|XP_015883538.1| (PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba])

HSP 1 Score: 361.3 bits (926), Expect = 1.7e-96
Identity = 183/191 (95.81%), Postives = 190/191 (99.48%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDENQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQ+HIRVGRQVVNIPSFMVR+DSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKA
Sbjct: 127 ARVLIRQRHIRVGRQVVNIPSFMVRLDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 186

Query: 296 AGGDGDEEDED 307
           AGGDGDEEDED
Sbjct: 187 AGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG02g10900 vs. NCBI nr
Match: gi|1009124995|ref|XP_015879372.1| (PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba])

HSP 1 Score: 359.0 bits (920), Expect = 8.3e-96
Identity = 181/191 (94.76%), Postives = 190/191 (99.48%), Query Frame = 1


Query: 116 FKSDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 175
           +++ GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE
Sbjct: 7   YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDE 66

Query: 176 KNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHH 235
           KNPRRIFEGEALLRRMNRYGLL+E+QNKLDYVLALTVENFLERRLQT+VFK+GMAKSIHH
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLEENQNKLDYVLALTVENFLERRLQTIVFKAGMAKSIHH 126

Query: 236 ARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKA 295
           ARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKA
Sbjct: 127 ARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKA 186

Query: 296 AGGDGDEEDED 307
           AGGDGDEEDED
Sbjct: 187 AGGDGDEEDED 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g10900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS92_ARATH	1.0e-93	90.05	40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1	[more]
RS91_ARATH	1.1e-87	85.94	40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1	[more]
RS9_PODAS	3.0e-69	72.25	40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1	[more]
RS9_BOVIN	2.5e-68	71.20	40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1	[more]
RS9_HUMAN	2.5e-68	71.20	40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3	[more]

BLAST of Cp4.1LG02g10900 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QQ56_9ROSA	4.7e-98	99.47	40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_005300 PE=3 SV=1	[more]
A0A0A0KSN1_CUCSA	1.0e-97	97.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1	[more]
D7FBA7_VITVI	1.7e-95	94.76	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=...	[more]
W9QV98_9ROSA	1.7e-95	95.29	40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1	[more]
A0A059ARY5_EUCGR	4.9e-95	94.24	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1	[more]

BLAST of Cp4.1LG02g10900 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39850.1	5.7e-95	90.05	Ribosomal protein S4	[more]
AT5G15200.1	6.1e-89	85.94	Ribosomal protein S4	[more]

BLAST of Cp4.1LG02g10900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082817\|ref\|XP_010092050.1\|	6.8e-98	99.47	40S ribosomal protein S9-2 [Morus notabilis]	[more]
gi\|449434792\|ref\|XP_004135180.1\|	1.5e-97	97.38	PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus]	[more]
gi\|719965609\|ref\|XP_010256989.1\|	1.7e-96	96.34	PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera]	[more]
gi\|1009132749\|ref\|XP_015883538.1\|	1.7e-96	95.81	PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba]	[more]
gi\|1009124995\|ref\|XP_015879372.1\|	8.3e-96	94.76	PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding
GO:0019843	rRNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR022801	Ribosomal_S4/S9
IPR018079	Ribosomal_S4_CS
IPR005710	Ribosomal_S4/S9_euk/arc
IPR002942	S4_RNA-bd
IPR001912	Ribosomal_S4/S9_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g10900.1	Cp4.1LG02g10900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 120..173 score: 2.2E-8coord: 8..64 score: 7.
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 8..108 score: 6.8E-25coord: 117..217 score: 9.1
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 217..263 score: 3.9
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 218..261 score: 8.2
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 218..289 score: 2.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 218..289 score: 11
IPR005710	Ribosomal protein S4/S9, eukaryotic/archaeal	TIGRFAMs	TIGR01018	TIGR01018	coord: 11..118 score: 7.8E-39coord: 121..275 score: 1.6
IPR018079	Ribosomal protein S4, conserved site	PROSITE	PS00632	RIBOSOMAL_S4	coord: 216..240 scor
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..114 score: 1.1E-144coord: 224..306 score: 1.1E
None	No IPR available	PANTHER	PTHR11831:SF13	SUBFAMILY NOT NAMED	coord: 1..114 score: 1.1E-144coord: 224..306 score: 1.1E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 12..117 score: 7.85E-16coord: 121..268 score: 1.22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g10900	Cucsa.237190	Cucumber (Gy14) v1	cgycpeB0629
Cp4.1LG02g10900	CmaCh09G013100	Cucurbita maxima (Rimu)	cmacpeB051
Cp4.1LG02g10900	CmaCh01G008540	Cucurbita maxima (Rimu)	cmacpeB490
Cp4.1LG02g10900	CmoCh01G009000	Cucurbita moschata (Rifu)	cmocpeB448
Cp4.1LG02g10900	CmoCh09G012750	Cucurbita moschata (Rifu)	cmocpeB025
Cp4.1LG02g10900	Cla012458	Watermelon (97103) v1	cpewmB544
Cp4.1LG02g10900	Csa5G649850	Cucumber (Chinese Long) v2	cpecuB579
Cp4.1LG02g10900	MELO3C022177	Melon (DHL92) v3.5.1	cpemeB486
Cp4.1LG02g10900	ClCG08G001030	Watermelon (Charleston Gray)	cpewcgB532
Cp4.1LG02g10900	CSPI05G30950	Wild cucumber (PI 183967)	cpecpiB580
Cp4.1LG02g10900	Lsi08G000810	Bottle gourd (USVL1VR-Ls)	cpelsiB479
Cp4.1LG02g10900	MELO3C022177.2	Melon (DHL92) v3.6.1	cpemedB575
Cp4.1LG02g10900	CsaV3_5G039990	Cucumber (Chinese Long) v3	cpecucB0717
Cp4.1LG02g10900	Bhi06G000199	Wax gourd	cpewgoB0671
Cp4.1LG02g10900	CsGy5G030250	Cucumber (Gy14) v2	cgybcpeB672
Cp4.1LG02g10900	Carg24133	Silver-seed gourd	carcpeB0953

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG02g10900	Cp4.1LG06g09830	Cucurbita pepo (Zucchini)	cpecpeB462

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG02g10900	Watermelon (Charleston Gray)	cpewcgB534
Cp4.1LG02g10900	Watermelon (97103) v1	cpewmB547
Cp4.1LG02g10900	Silver-seed gourd	carcpeB0235