CmoCh09G012750 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G012750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Small subunit rib
Location	Cmo_Chr09 : 11163519 .. 11165642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCTCTTACTCTCTTTTGCTTCTTCAGCTACTTCTCTTCCCTCTCTGTGGCATTCAAGATCATTCTGTAAGTGAAGCCGTTGCAGAGAAGGGATCATGGTGCACGTCTCCTTCTATAGGAACTGTAAGCATGAATCTCTTACTTTTCCTTGAATGATTTTGTTTTCATTCTCAATTTTCCAACTTCCGTTTCTCTAGTGCTTTTCTTGTTCGTAATTTCTTCATTGGACTCTCCGATTGTGTTTCGCACATGTTTTGCTGCTTTTTTGATCGGTATTGCTGGAAATTTCCAAGGATTTAAATGTTTTAAATGATTTTTACAGCTCCTTTTGAGCTGCTGATGTAAGTATCACTTGATGTAGAATCGGTGACGTTGGATTTAAGGGAATATGATGCTCGATAATAATCTCTTAGGGTTTTTTTTTTTTCTTTTTTGAAATTTTGTTCTTTGCATCTTATGGAGATTAAGAAATGGCGTAGTTCGTCTTTCGCAAAAACTTCAGAAAATAAACGATGCTTCTTCTTGGTGTTTTTATTTAGAGCTAAGATAATTGATGTGTGGGTTTTATCTGTATGTAGATGGGAAGACATTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTCTGGATGCCGAGTTGAAATTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTATGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGTATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATATTTGAGGGAGAGGCTCTTCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCTATCCATCATGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGTAGTATGCCTTCATTATCCTTTTCCATACCCATAACATTCTTTATTCTTCCATTAGCTATTTTGATTACTTTTCGTTGTTTTGTAAAATTCTTAGTGCTTGATGATCAACTCTTACAGATATCATATTTATTTTCTGAGAATTGAATGTTGCTATGCTGCTTTCGTTTAGATATAACACATAAAATTCTTTGGGAAAGAGCCAAAAGCACTCGCAAGCCAAAACTGCATAACTCCACATATTTTGTTTTTTACTTAAATGTTGGAAGTTCAAATCCTCACTAGAAAAAGGTTTTTAGCTACATATTTGTGGATCACTTTTAGCTCAAGTGATGATGATCTAAAAGAATTTTAAAGACTTGAGAAGTGTAGAGTCACTTCAATGTCGTTTTTTTTAGTTAATTAAGTTCTTATACATTGATATATGTATATGTAAAGTACTGGACATTAATACGAAGTTCTTATACGTTGATATATGTTTGTTGGATGTAAAGTACTGGACATTAATAATTTCATCTGTCACATTTTATCCTTAGGGTCGGAAGGCAGGTGGTCAACATCCCTTCTTTCATGGTGCGGGTCGATTCCCAGAAGCACATAGACTTCTCACTCACGAGTCCGTTTGGAGGTGGCCGTCCTGGAAGGGTGAAGCGAAAGAACCAGAAGGCAGCTGCAAAGAAGGCTGCTGGAGGCGACGGTGATGAAGAAGACGAGGATTGAGTTATTGACGAAAAAAATGATTATCCGAGATGAAAATGATTAGCTGAGGATCTCAGGTACTGAGATCAGCCTCAATCTATAAACCTTATCTATCACTATATTTGAAAGAGAATGTTACCTCCTTTTAGAAGTTTTGCTTTAAATATTTTGGAATTAGAGAACTTGTTTGTTTTTTTTTGGTTATGGCGGCGACTTGATCATAACCTATTTGGTTTTTTAAGTTGTCACAGTTTTCATTAATCGATACTTGATCATGTGAAGGACTCACTTTTTTCCTAAACATTTTTATGCACTATGAATTATTTTAGTTCATTTGATCCATTGATAGGCTTTGTAATTCTAAGGCTCATGAGTTCTTGAATTCTTATTAAAGATGTACAAGAGCTTCATAAAAGGGTATAGGGATGTGACCTGATAAATTTTCAATTCAAGTAGATTTCGATG

mRNA sequence

CTGCTCTTACTCTCTTTTGCTTCTTCAGCTACTTCTCTTCCCTCTCTGTGGCATTCAAGATCATTCTGTAAGTGAAGCCGTTGCAGAGAAGGGATCATGGTGCACGTCTCCTTCTATAGGAACTATGGGAAGACATTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTCTGGATGCCGAGTTGAAATTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTATGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGTATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATATTTGAGGGAGAGGCTCTTCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCTATCCATCATGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTCGGAAGGCAGGTGGTCAACATCCCTTCTTTCATGGTGCGGGTCGATTCCCAGAAGCACATAGACTTCTCACTCACGAGTCCGTTTGGAGGTGGCCGTCCTGGAAGGGTGAAGCGAAAGAACCAGAAGGCAGCTGCAAAGAAGGCTGCTGGAGGCGACGGTGATGAAGAAGACGAGGATTGAGTTATTGACGAAAAAAATGATTATCCGAGATGAAAATGATTAGCTGAGGATCTCAGGTACTGAGATCAGCCTCAATCTATAAACCTTATCTATCACTATATTTGAAAGAGAATGTTACCTCCTTTTAGAAGTTTTGCTTTAAATATTTTGGAATTAGAGAACTTGTTTGTTTTTTTTTGGTTATGGCGGCGACTTGATCATAACCTATTTGGTTTTTTAAGTTGTCACAGTTTTCATTAATCGATACTTGATCATGTGAAGGACTCACTTTTTTCCTAAACATTTTTATGCACTATGAATTATTTTAGTTCATTTGATCCATTGATAGGCTTTGTAATTCTAAGGCTCATGAGTTCTTGAATTCTTATTAAAGATGTACAAGAGCTTCATAAAAGGGTATAGGGATGTGACCTGATAAATTTTCAATTCAAGTAGATTTCGATG

Coding sequence (CDS)

ATGGTGCACGTCTCCTTCTATAGGAACTATGGGAAGACATTCAAGAAACCCCGACGTCCTTATGAGAAGGAGCGTCTGGATGCCGAGTTGAAATTGGTTGGAGAATATGGGCTTCGTTGTAAGAGGGAGTTATGGAGGGTTCAATATGCATTGAGCCGAATCCGAAACAATGCTCGTATGCTCTTAACACTTGATGAAAAGAACCCGCGTAGGATATTTGAGGGAGAGGCTCTTCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCCCTTACTGTGGAGAATTTCCTTGAGCGTCGTCTCCAAACTCTCGTGTTCAAGTCTGGTATGGCAAAGTCTATCCATCATGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTCGGAAGGCAGGTGGTCAACATCCCTTCTTTCATGGTGCGGGTCGATTCCCAGAAGCACATAGACTTCTCACTCACGAGTCCGTTTGGAGGTGGCCGTCCTGGAAGGGTGAAGCGAAAGAACCAGAAGGCAGCTGCAAAGAAGGCTGCTGGAGGCGACGGTGATGAAGAAGACGAGGATTGA

Homology

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BLAST of CmoCh09G012750 vs. Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 2.5e-98
Identity = 179/197 (90.86%), Postives = 192/197 (97.46%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180

Query: 181 AAAKKAAGGDGDEEDED 198
           A AKKA+GGDGDE+DE+
Sbjct: 181 AGAKKASGGDGDEDDEE 197

[Close]

BLAST of CmoCh09G012750 vs. Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 9.4e-93
Identity = 172/198 (86.87%), Postives = 190/198 (95.96%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180

Query: 181 AAAKKAAGG---DGDEED 196
           +A+KKA+GG   DGD+E+
Sbjct: 181 SASKKASGGGDADGDDEE 198

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BLAST of CmoCh09G012750 vs. Swiss-Prot
Match: RS9_PODAS (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 7.7e-71
Identity = 140/191 (73.30%), Postives = 164/191 (85.86%), Query Frame = 1


Query: 8   RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEK 67
           R+Y KT K PRRP+E  RLD+ELKLVGEYGLR KRE+WRV   LS+IR  AR LLTLDEK
Sbjct: 4   RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63

Query: 68  NPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 127
           +P+R+FEG AL+RR+ R G+LDES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHA
Sbjct: 64  DPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHA 123

Query: 128 RVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAA 187
           RVLIRQ+HIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSPFGGGRPGRV+RK     AK A 
Sbjct: 124 RVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKK----AKAAE 183

Query: 188 GGDGD-EEDED 198
           GGDGD EEDE+
Sbjct: 184 GGDGDAEEDEE 190

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BLAST of CmoCh09G012750 vs. Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.2e-69
Identity = 132/184 (71.74%), Postives = 155/184 (84.24%), Query Frame = 1


Query: 12  KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 71
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 72  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 131
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 132 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 191
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K     A  GD 
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDD 190

Query: 192 DEED 196
           +EED
Sbjct: 191 EEED 194

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BLAST of CmoCh09G012750 vs. Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 261.5 bits (667), Expect = 7.2e-69
Identity = 132/184 (71.74%), Postives = 155/184 (84.24%), Query Frame = 1


Query: 12  KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 71
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 72  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 131
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 132 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 191
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K     A  GD 
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDD 190

Query: 192 DEED 196
           +EED
Sbjct: 191 EEED 194

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BLAST of CmoCh09G012750 vs. TrEMBL
Match: A0A0A0KSN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.2e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. TrEMBL
Match: W9QV98_9ROSA (40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.5e-102
Identity = 193/197 (97.97%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNR+GLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRHGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGD ++ED
Sbjct: 181 AAAKKAAGGDGDGDEED 197

[Close]

BLAST of CmoCh09G012750 vs. TrEMBL
Match: D7FBA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.5e-102
Identity = 192/197 (97.46%), Postives = 195/197 (98.98%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSF+VR+DSQKHIDFSLTSP GGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. TrEMBL
Match: A0A059ARY5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.0e-101
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN K
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNTK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AA+KKA+GGDG+EEDED
Sbjct: 181 AASKKASGGDGEEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. TrEMBL
Match: A0A059CYL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00467 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.3e-101
Identity = 192/197 (97.46%), Postives = 194/197 (98.48%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNI SFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN K
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIASFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNTK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKA+GGDGDEEDED
Sbjct: 181 AAAKKASGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. TAIR10
Match: AT5G39850.1 (AT5G39850.1 Ribosomal protein S4)

HSP 1 Score: 359.4 bits (921), Expect = 1.4e-99
Identity = 179/197 (90.86%), Postives = 192/197 (97.46%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180

Query: 181 AAAKKAAGGDGDEEDED 198
           A AKKA+GGDGDE+DE+
Sbjct: 181 AGAKKASGGDGDEDDEE 197

[Close]

BLAST of CmoCh09G012750 vs. TAIR10
Match: AT5G15200.1 (AT5G15200.1 Ribosomal protein S4)

HSP 1 Score: 340.9 bits (873), Expect = 5.3e-94
Identity = 172/198 (86.87%), Postives = 190/198 (95.96%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180

Query: 181 AAAKKAAGG---DGDEED 196
           +A+KKA+GG   DGD+E+
Sbjct: 181 SASKKASGGGDADGDDEE 198

[Close]

BLAST of CmoCh09G012750 vs. NCBI nr
Match: gi|449434792|ref|XP_004135180.1| (PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus])

HSP 1 Score: 386.3 bits (991), Expect = 3.1e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. NCBI nr
Match: gi|719965609|ref|XP_010256989.1| (PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera])

HSP 1 Score: 382.9 bits (982), Expect = 3.4e-103
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. NCBI nr
Match: gi|1009132749|ref|XP_015883538.1| (PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba])

HSP 1 Score: 382.9 bits (982), Expect = 3.4e-103
Identity = 194/197 (98.48%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDENQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVR+DSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRLDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. NCBI nr
Match: gi|1009124995|ref|XP_015879372.1| (PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba])

HSP 1 Score: 380.6 bits (976), Expect = 1.7e-102
Identity = 192/197 (97.46%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLL+E+QNKLDYVLALTVENFLERRLQT+VFK+GM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLEENQNKLDYVLALTVENFLERRLQTIVFKAGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh09G012750 vs. NCBI nr
Match: gi|720081906|ref|XP_010242426.1| (PREDICTED: 40S ribosomal protein S9-2 [Nelumbo nucifera])

HSP 1 Score: 379.4 bits (973), Expect = 3.8e-102
Identity = 194/197 (98.48%), Postives = 194/197 (98.48%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN ARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNAARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEDED 198
           AAAKKAAGGDGDEEDED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

The following BLAST results are available for this feature:

BLAST of CmoCh09G012750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS92_ARATH	2.5e-98	90.86	40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1	[more]
RS91_ARATH	9.4e-93	86.87	40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1	[more]
RS9_PODAS	7.7e-71	73.30	40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1	[more]
RS9_BOVIN	7.2e-69	71.74	40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1	[more]
RS9_HUMAN	7.2e-69	71.74	40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3	[more]

BLAST of CmoCh09G012750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSN1_CUCSA	2.2e-104	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1	[more]
W9QV98_9ROSA	3.5e-102	97.97	40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1	[more]
D7FBA7_VITVI	3.5e-102	97.46	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=...	[more]
A0A059ARY5_EUCGR	1.0e-101	96.95	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1	[more]
A0A059CYL4_EUCGR	1.3e-101	97.46	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00467 PE=3 SV=1	[more]

BLAST of CmoCh09G012750 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39850.1	1.4e-99	90.86	Ribosomal protein S4	[more]
AT5G15200.1	5.3e-94	86.87	Ribosomal protein S4	[more]

BLAST of CmoCh09G012750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434792\|ref\|XP_004135180.1\|	3.1e-104	100.00	PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus]	[more]
gi\|719965609\|ref\|XP_010256989.1\|	3.4e-103	98.98	PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera]	[more]
gi\|1009132749\|ref\|XP_015883538.1\|	3.4e-103	98.48	PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba]	[more]
gi\|1009124995\|ref\|XP_015879372.1\|	1.7e-102	97.46	PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba]	[more]
gi\|720081906\|ref\|XP_010242426.1\|	3.8e-102	98.48	PREDICTED: 40S ribosomal protein S9-2 [Nelumbo nucifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012750.1	CmoCh09G012750.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G012750	Cucsa.237190	Cucumber (Gy14) v1	cgycmoB0658
CmoCh09G012750	CmaCh09G013100	Cucurbita maxima (Rimu)	cmacmoB028
CmoCh09G012750	CmaCh01G008540	Cucurbita maxima (Rimu)	cmacmoB438
CmoCh09G012750	Cla012458	Watermelon (97103) v1	cmowmB011
CmoCh09G012750	Csa5G649850	Cucumber (Chinese Long) v2	cmocuB020
CmoCh09G012750	MELO3C022177	Melon (DHL92) v3.5.1	cmomeB000
CmoCh09G012750	ClCG08G001030	Watermelon (Charleston Gray)	cmowcgB027
CmoCh09G012750	CSPI05G30950	Wild cucumber (PI 183967)	cmocpiB020
CmoCh09G012750	Lsi08G000810	Bottle gourd (USVL1VR-Ls)	cmolsiB025
CmoCh09G012750	Cp4.1LG02g10900	Cucurbita pepo (Zucchini)	cmocpeB025
CmoCh09G012750	Cp4.1LG06g09830	Cucurbita pepo (Zucchini)	cmocpeB035
CmoCh09G012750	MELO3C022177.2	Melon (DHL92) v3.6.1	cmomedB000
CmoCh09G012750	CsaV3_5G039990	Cucumber (Chinese Long) v3	cmocucB0024
CmoCh09G012750	Cla97C08G145410	Watermelon (97103) v2	cmowmbB028
CmoCh09G012750	Bhi06G000199	Wax gourd	cmowgoB0001
CmoCh09G012750	CsGy5G030250	Cucumber (Gy14) v2	cgybcmoB551
CmoCh09G012750	Carg24133	Silver-seed gourd	carcmoB0929

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G012750	CmoCh01G009000	Cucurbita moschata (Rifu)	cmocmoB021

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G012750	Silver-seed gourd	carcmoB0229
CmoCh09G012750	Cucurbita maxima (Rimu)	cmacmoB029