Cp4.1LG02g04600 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG02g04600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosomal RNA large subunit methyltransferase H
LocationCp4.1LG02 : 2302934 .. 2306421 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACGGTGGCAACTTGCTAACTGACACGTCATCATCTCCGTCTTAGCCCGAGGGGTCTGGTTTCTGCTCTCGGCTTCTTATCAATGGTTACTGCTCTCTGTGCTAACATTTCCGCTTCTCCTTCAGGTATCATCGTTTTCTCTACAAGAGATGGAAAATAAAAAAAAACCCTAGAATTTGACCTTGGTTTTGTTCGTCTATGTTCTTACCGGCGTTGTGTAATGTTTCTCCGATTTCGAGCTTTCAGTTGGACGTTGCAAGTACACCGGTCAATCTGTGGTACGTTTATTGTTTCTTTCTGTAAATTTAGTTTCGTTGTTTGGTTCTTGTGATTTTTGTCTTCGTTGTGATTCTTTTTCCTTTTTACGGTCTCGGTCGTTCGATTGGCGTTTCGTTGAGTTTTGCAATTCCATTTTGTTAATATCTGATATATTTGGCTGAGATTTCAGTGTGATTGAGGCTCAGGATGACTGAGTTTTAACTGAGATTAGTCTTTTATGGACAATGAACAGAGAGCGGTGCCGATACGCGTTTTAACTGTTGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGACGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGTATGTGATTGTACGGTTGGTTTTCATTTATCAGTTTTCTGATTTACGCTCGAACTTTCAATCTCTGATGAATGATGCTAATCTTAATGAATGCTTTCCATTCCATGTTTCGTTTCTGCATTATAGGGATCCAAGAGCTCAGGTTGATGACGAAGACGTAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTTATCTCTTAACATTCATTTTCGTTGAATCATTACGAGTTTTGTTATTCTGGCTGTGCTCTTTTATTTGATAACTAGTTTAGAACTCTCTTTGTGAGACCTCGCATCGATTAAAGAGGGGAACGAATGCCAGTGAGAACACTAGACTCCAAAGGGGTGGATGGATTGTGAGATCCCACAACGGTTGGAGAGGGGAACGAAACATTCTTTACAAGGGTGTGGAAACCTCTGTCTAGTTTAGAACTAGTTTAGAGCTCTCCCTGTGAGATCCCACATCGATTGAAAAGGGGAACGAATGCCAACAAGGATGCTGGACCCCGAAAGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACAAAGCATTCTTTGTAAGAGTGTGGAAACCTCTCTCAAACATATGCGTTTTAAAACCTTGAGGGGAAGCCTGAAAGGGAAAGCCCAAACAATATCTGCTAGGGGTGGACTTGAACGGTTACAAATCTCTCTATCTCTCTCTCCGTCCCTCAATTACATCATTCTTTTGCCATCTAAAATGTGAAAGAACATTGATTTCTTGTACTTTTTACTTCAAAAGCATGGATCATAGTGCTTCTTTTTCAGAAAAGAAATATAGTTTGCTATGTGCTTTGATTTTATTTTTAGCCCTTCTTCTAAAACTGATCTTTAAAATAGTTTATAATGGTCGTGCTTACTGCTTACAGTGTGTACCATATCCATTCTGCATATGCACCTTCAGGTTGTGATGTTGGATGAGAAAGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGTGAGTACCATTTCCAATTCAAATCAAATGGGTTGCATTGTTATCATCAATTCATCTCTACTGGACTGATTCCTAATAGTTCAAAGTTCAAAGTTAGTTGCCAAGGCCCCATTTGAGAACGGATTGGTTTGGTTTTTTGTTTTCGAAAATTAAGCTTATAAATACTACTTCCACCTATGGAATTCCTTGTTTTGTTATCCACTTCTTACATTTATTTTAGAAAATCGAGCCAAGTTTTGAAAAACTAAGAAAAGTAGTTTTCAAAAACGTGTTTTTGTCTTTAGATCTTGGCTAAGAATTTGTTTTCTCAAGAGAAATGATACGAAAATAAACATAATTTTCAAAAACAGAATAGTTATCAAACAGGACCCGAGGAGTTTGGACTAGAAATTGAGAGTTTTGCTTGAGGCACCTCGAAGTTAAACCAGCCCACATGTTCAACCTCCATGTCAGTCTAGATCTTAATATGTAACAGTCTCCTGCTTTCTAATTTGATGTTAATAAAGTTTTGTATTAATCACCATGGTCCAATTGTTTCTGTAATCAAATTTGTTAGAACTATGGGTGTATCCCAGAATGAAAATGGCATTTCTTATGTTTCTTCTTCTTTGCAGGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCTTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGGTACTTTTTTGTTTCTTCTCTTCTAACCATTAGTGCATTTCGAGTTTCATTTGCAACATCAAATGCTCCTCAAGCAGAGTTTTCCCAAAATGATGTGTTGGGTGGAGTATCCACTTACATTAATGTGATCTTGTACAATAAAGTAACAACTACTACATAGTGAATATATAGGAATCCAAATCCCCGAATTATTCTGATTATGATCTTCTACATCCTAGGTCTTTCTGTTTCTTCATCTGACTTATGTTCTTTCTTTAGCATTCAGATCAAATGATTCTATGAAATTACGTCGATACTTCTACATATTACAAGTTTTGAGAATCCTTAGAATTACCACTGCGATAATAATCAACTTCTACTCAAGAAGTTTGACATATAAAATACTGAGGGACTTTCAGTTTTGCTCAAATCAGCCAAGAATCATGATGCTCCTCTTTCTCTCTCTATCTCCATCTAGAGATTTATTCAAACCTCAGTTCAACCCTGAAAAACACACAAAACTAACAATGCACCATCTTTGCATCTGTGAAGCTTATTGTACAATATAATGCTTATTCTGAATGTATGTATTCTTTTAGTTCATGGACTATTCTGAAGGGTCAGAAGTACCATCATTAGTAGCAGTGTTCGCATGGTATTTTCGTATCTTTTTTTATTTATTGGAAGAGACCGTTTAATTGTAGTTTATTATTATGTCGGGATGAATATTTAGAGGTTTGAATATCATTTTGGTCCATGTATTTTTGTGATGTCTCACATTGGTTGGGGAGGAGAACATGCCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGAGGAAGCCCGAAAGGGAAAGCCCAAAAAGGACAATATCGGCTAGCGGTGGATCTGGGTCGTTACAATTTTTAGTTCCATTTCATTATTATAGTCTCTTGCCACCAGATGAGGCATCATCTTCCCTGCCCAACCTAGTTGCACCACATGCAGCTCATCAAAATGAAGAGGGTAAGGGGAGTTCTGCCCCGGGGCTAACCCTTCGAGTAGTATTCACTTTTTA

mRNA sequence

CACGGTGGCAACTTGCTAACTGACACGTCATCATCTCCGTCTTAGCCCGAGGGGTCTGGTTTCTGCTCTCGGCTTCTTATCAATGGTTACTGCTCTCTGTGCTAACATTTCCGCTTCTCCTTCAGTTGGACGTTGCAAGTACACCGGTCAATCTGTGAGAGCGGTGCCGATACGCGTTTTAACTGTTGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGACGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGGATCCAAGAGCTCAGGTTGATGACGAAGACGTAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTGTGATGTTGGATGAGAAAGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCTTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGTTCATGGACTATTCTGAAGGGTCAGAAGTACCATCATTAGTAGCAGTGTTCGCATGGTATTTTCGTATCTTTTTTTATTTATTGGAAGAGACCGTTTAATTGTAGTTTATTATTATGTCGGGATGAATATTTAGAGGTTTGAATATCATTTTGGTCCATGTATTTTTGTGATGTCTCACATTGGTTGGGGAGGAGAACATGCCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGAGGAAGCCCGAAAGGGAAAGCCCAAAAAGGACAATATCGGCTAGCGGTGGATCTGGGTCGTTACAATTTTTAGTTCCATTTCATTATTATAGTCTCTTGCCACCAGATGAGGCATCATCTTCCCTGCCCAACCTAGTTGCACCACATGCAGCTCATCAAAATGAAGAGGGTAAGGGGAGTTCTGCCCCGGGGCTAACCCTTCGAGTAGTATTCACTTTTTA

Coding sequence (CDS)

ATGGTTACTGCTCTCTGTGCTAACATTTCCGCTTCTCCTTCAGTTGGACGTTGCAAGTACACCGGTCAATCTGTGAGAGCGGTGCCGATACGCGTTTTAACTGTTGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGACGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGGATCCAAGAGCTCAGGTTGATGACGAAGACGTAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTGTGATGTTGGATGAGAAAGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCTTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGTTCATGGACTATTCTGAAGGGTCAGAAGTACCATCATTAG

Protein sequence

MVTALCANISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNVEDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGNTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKYHH
BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: Y5620_ARATH (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-65
Identity = 126/177 (71.19%), Postives = 154/177 (87.01%), Query Frame = 1

Query: 10  SASPSV---GR-CKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNVEDVQL 69
           SASP+    GR C+Y GQ+VRA+PIRV+TVGKKRS GV+LL+DEY  KL  YC+ ED  +
Sbjct: 17  SASPTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLV 76

Query: 70  RSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGNTGASR 129
           RSNPRNA+D RAQV+DE+VA++ L+ SDDWVV+LDE+G++I SEQMAEL+ DAGN+GASR
Sbjct: 77  RSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASR 136

Query: 130 LAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKYHH 183
           ++FCIGG YGHG Q+R+RANV+I+LSSMVLNHQIAL+VLMEQLY SWTILKGQ YHH
Sbjct: 137 ISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193

BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: RLMH_GRAFK (Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) GN=rlmH PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-21
Identity = 59/158 (37.34%), Postives = 91/158 (57.59%), Query Frame = 1

Query: 30  IRVLTVGKKRSRGVQLLIDEYIDKLNNYCNVE-----DVQLRSNPRNARDPRAQVDDEDV 89
           I+++ +GK   + ++ LI  Y D+L +Y   E     D++   N     D   Q   E  
Sbjct: 3   IKLVCIGKTDKKELEALIKIYSDRLQHYIKFEFEIIPDLKKTKN----LDENQQKSKEGE 62

Query: 90  AVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGNTGASRLAFCIGGPYGHGQQLRQRA 149
            +++ +++ D+VV+LDE GK+ SSE  +E +    NTG  RL F IGGPYG  +++ +RA
Sbjct: 63  LILSGVQNSDFVVLLDENGKQFSSESFSEYIQKRMNTGLKRLIFVIGGPYGFSEEVYKRA 122

Query: 150 NVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKYHH 183
           +  I LS M  +HQ+  L   EQLY ++TILK + YHH
Sbjct: 123 DSKISLSKMTFSHQMVRLFFTEQLYRAFTILKNEPYHH 156

BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: RLMH_MYXXD (Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK 1622) GN=rlmH PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-20
Identity = 57/152 (37.50%), Postives = 88/152 (57.89%), Query Frame = 1

Query: 30  IRVLTVGKKRSRGVQLLIDEYIDKLNNYCNVEDVQLRSNPRNARDPRAQVDDEDVAVVNL 89
           +R+L++GK RS   +  + EY  +L +Y   E V++         P      E  A+++ 
Sbjct: 3   VRLLSIGKDRSGLYEPAVQEYAKRLGHYTRFELVEMAEASGKRLKPGDAKAAEAEAILSK 62

Query: 90  LKSDDWVVMLDEKGKEISSEQMAELVADAGNTGASRLAFCIGGPYGHGQQLRQRANVSIK 149
            K  DW+V LDE+G  + S +++  V  A  TGA  L F IGG  G   ++R  AN+++ 
Sbjct: 63  RKPQDWLVALDERGSLLDSVELSRYVGKA-QTGAKDLLFIIGGDEGLDARVRDAANLTLS 122

Query: 150 LSSMVLNHQIALLVLMEQLYSSWTILKGQKYH 182
           LS M L H++A +VL+EQLY ++TILKG+ YH
Sbjct: 123 LSKMTLPHRLARVVLIEQLYRAFTILKGEPYH 153

BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: RLMH_CLOBA (Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rlmH PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 55/156 (35.26%), Postives = 93/156 (59.62%), Query Frame = 1

Query: 30  IRVLTVGKKRSRGVQLLIDEYIDKLNNYC--NVEDVQLRSNPRNA--RDPRAQVDDEDVA 89
           I +++VGK + + ++  IDEY  +L+ YC  N+ ++Q    P NA  +D     D E   
Sbjct: 3   ITIISVGKLKEKYLKHAIDEYSKRLSRYCKLNIVELQDEQTPDNASEKDELIIKDKEGNK 62

Query: 90  VVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGNTGASRLAFCIGGPYGHGQQLRQRAN 149
           ++N +K + +V+ LD KGK ISSE++++ + + G  G S L F IGG  G  + + +R+N
Sbjct: 63  ILNSIKDNMYVITLDLKGKMISSEELSKFIDNCGVRGNSNLCFIIGGSLGLSEAVLKRSN 122

Query: 150 VSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKYH 182
            S+  S M   HQ+  ++L+EQ+Y ++ I  G+ YH
Sbjct: 123 YSLCFSKMTFPHQLFRVMLLEQIYRAFRISNGEPYH 158

BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: RLMH_CLOBM (Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rlmH PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19
Identity = 54/156 (34.62%), Postives = 92/156 (58.97%), Query Frame = 1

Query: 30  IRVLTVGKKRSRGVQLLIDEYIDKLNNYC--NVEDVQLRSNPRNARDPRAQV--DDEDVA 89
           I +++VGK + + ++  IDEY  +L+ YC  N+ +V     P NA      +  + E   
Sbjct: 3   ISIISVGKIKEKFLRAAIDEYSKRLSKYCKLNIIEVTDEKTPDNASLKEENIIREKEGSL 62

Query: 90  VVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGNTGASRLAFCIGGPYGHGQQLRQRAN 149
           ++  +K +++V+ +D KGK I+SE+ ++L+ +   TG S +AF IGG  G  QQ+  RAN
Sbjct: 63  ILKHIKDNNFVIAIDLKGKSIASEEFSDLIENCRLTGNSTIAFVIGGSLGLSQQVLSRAN 122

Query: 150 VSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKYH 182
             +  S M   HQ+  ++L+EQ+Y ++ IL G+ YH
Sbjct: 123 YKLSFSKMTFPHQLFRVMLLEQVYRAFRILCGEPYH 158

BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: A0A0A0LGS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881670 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 7.1e-86
Identity = 164/182 (90.11%), Postives = 172/182 (94.51%), Query Frame = 1

Query: 1   MVTALCANISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDP+AQVDDEDVAVVNLLK DDWVVMLDE GKE+SSE MAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGN 120

Query: 121 TGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKY 180
           T ASRL+FCIGGPYGHGQQLRQRAN+SIKLSSMVLNHQIALLVLMEQLY SWTILKGQKY
Sbjct: 121 TSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: A0A0R0FFW9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G201400 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-73
Identity = 140/183 (76.50%), Postives = 165/183 (90.16%), Query Frame = 1

Query: 1   MVTALCANISASPSVGR-CKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCN 60
           M TA+   ++++P+ GR CKY GQSVRA+PIR+L+VGKKRSRG+QL++DEY DKL  YCN
Sbjct: 1   MGTAIQLCVTSNPAQGRKCKYEGQSVRALPIRILSVGKKRSRGLQLMVDEYADKLRYYCN 60

Query: 61  VEDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAG 120
           VED Q+R NPRNARD RAQVD ED AV+NL++SDDWVVMLDE+G++I SEQMAELV DAG
Sbjct: 61  VEDAQIRPNPRNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIESEQMAELVGDAG 120

Query: 121 NTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQK 180
           NTGASRL+FCIGGPYGHG+++RQRAN+SIKLSS+VLNHQIALLVLMEQLY SWTILKGQK
Sbjct: 121 NTGASRLSFCIGGPYGHGRKMRQRANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQK 180

Query: 181 YHH 183
           YHH
Sbjct: 181 YHH 183

BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: K7MMT4_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-73
Identity = 140/183 (76.50%), Postives = 165/183 (90.16%), Query Frame = 1

Query: 1   MVTALCANISASPSVGR-CKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCN 60
           M TA+   ++++P+ GR CKY GQSVRA+PIR+L+VGKKRSRG+QL++DEY DKL  YCN
Sbjct: 23  MGTAIQLCVTSNPAQGRKCKYEGQSVRALPIRILSVGKKRSRGLQLMVDEYADKLRYYCN 82

Query: 61  VEDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAG 120
           VED Q+R NPRNARD RAQVD ED AV+NL++SDDWVVMLDE+G++I SEQMAELV DAG
Sbjct: 83  VEDAQIRPNPRNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIESEQMAELVGDAG 142

Query: 121 NTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQK 180
           NTGASRL+FCIGGPYGHG+++RQRAN+SIKLSS+VLNHQIALLVLMEQLY SWTILKGQK
Sbjct: 143 NTGASRLSFCIGGPYGHGRKMRQRANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQK 202

Query: 181 YHH 183
           YHH
Sbjct: 203 YHH 205

BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: A0A0B2SEZ4_GLYSO (Putative RNA methyltransferase OS=Glycine soja GN=glysoja_044540 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-73
Identity = 140/183 (76.50%), Postives = 165/183 (90.16%), Query Frame = 1

Query: 1   MVTALCANISASPSVGR-CKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCN 60
           M TA+   ++++P+ GR CKY GQSVRA+PIR+L+VGKKRSRG+QL++DEY DKL  YCN
Sbjct: 1   MGTAIQLCVTSNPAQGRKCKYEGQSVRALPIRILSVGKKRSRGLQLMVDEYADKLRYYCN 60

Query: 61  VEDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAG 120
           VED Q+R NPRNARD RAQVD ED AV+NL++SDDWVVMLDE+G++I SEQMAELV DAG
Sbjct: 61  VEDAQIRPNPRNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIESEQMAELVGDAG 120

Query: 121 NTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQK 180
           NTGASRL+FCIGGPYGHG+++RQRAN+SIKLSS+VLNHQIALLVLMEQLY SWTILKGQK
Sbjct: 121 NTGASRLSFCIGGPYGHGRKMRQRANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQK 180

Query: 181 YHH 183
           YHH
Sbjct: 181 YHH 183

BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: I1M9Q9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G132800 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.6e-72
Identity = 138/183 (75.41%), Postives = 165/183 (90.16%), Query Frame = 1

Query: 1   MVTALCANISASPSVGR-CKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCN 60
           M TAL   +S +P+ GR CKY  QSVRA+PIR+L+VGKKRSRG+QL++DEY+DKL  YC+
Sbjct: 1   MGTALHLCVSFNPAQGRKCKYEAQSVRALPIRILSVGKKRSRGLQLMVDEYVDKLRYYCS 60

Query: 61  VEDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAG 120
           VEDVQ+R NP+NARD RAQVD ED AV+NL++SDDWVVMLDE+G++I SEQMAELV DAG
Sbjct: 61  VEDVQIRPNPQNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIGSEQMAELVGDAG 120

Query: 121 NTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQK 180
           NTGASRL+FCIGGPYGHG+++R+RAN+SIKLSS+VLNHQIALLVL+EQLY SWTILKGQK
Sbjct: 121 NTGASRLSFCIGGPYGHGRKMRERANLSIKLSSLVLNHQIALLVLVEQLYRSWTILKGQK 180

Query: 181 YHH 183
           YHH
Sbjct: 181 YHH 183

BLAST of Cp4.1LG02g04600 vs. TAIR10
Match: AT5G10620.1 (AT5G10620.1 methyltransferases)

HSP 1 Score: 250.8 bits (639), Expect = 6.6e-67
Identity = 126/177 (71.19%), Postives = 154/177 (87.01%), Query Frame = 1

Query: 10  SASPSV---GR-CKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNVEDVQL 69
           SASP+    GR C+Y GQ+VRA+PIRV+TVGKKRS GV+LL+DEY  KL  YC+ ED  +
Sbjct: 17  SASPTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLV 76

Query: 70  RSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGNTGASR 129
           RSNPRNA+D RAQV+DE+VA++ L+ SDDWVV+LDE+G++I SEQMAEL+ DAGN+GASR
Sbjct: 77  RSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASR 136

Query: 130 LAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKYHH 183
           ++FCIGG YGHG Q+R+RANV+I+LSSMVLNHQIAL+VLMEQLY SWTILKGQ YHH
Sbjct: 137 ISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193

BLAST of Cp4.1LG02g04600 vs. TAIR10
Match: AT5G10605.1 (AT5G10605.1 methyltransferases)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1

Query: 131 GGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLME 167
           G  YGHG+QLR+RANV+I+LSSMVLNH IAL+VLME
Sbjct: 21  GVAYGHGRQLRKRANVAIRLSSMVLNHHIALVVLME 56

BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|659132685|ref|XP_008466330.1| (PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo])

HSP 1 Score: 329.3 bits (843), Expect = 4.2e-87
Identity = 165/182 (90.66%), Postives = 175/182 (96.15%), Query Frame = 1

Query: 1   MVTALCANISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDP+AQ+DDEDVAVVNLLKSDDWVVMLDE GKEISSEQMAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQIDDEDVAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGN 120

Query: 121 TGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKY 180
           TGASRL+FCIGGPYGHGQ+LR+RAN+SIKLSSMVLNHQIALLVLMEQLY SWTILKGQKY
Sbjct: 121 TGASRLSFCIGGPYGHGQKLRERANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|778687146|ref|XP_011652513.1| (PREDICTED: putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 1.0e-85
Identity = 164/182 (90.11%), Postives = 172/182 (94.51%), Query Frame = 1

Query: 1   MVTALCANISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDP+AQVDDEDVAVVNLLK DDWVVMLDE GKE+SSE MAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGN 120

Query: 121 TGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKY 180
           T ASRL+FCIGGPYGHGQQLRQRAN+SIKLSSMVLNHQIALLVLMEQLY SWTILKGQKY
Sbjct: 121 TSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIALLVLMEQLYRSWTILKGQKY 180

Query: 181 HH 183
           HH
Sbjct: 181 HH 182

BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|449437078|ref|XP_004136319.1| (PREDICTED: putative RNA methyltransferase At5g10620 isoform X1 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 4.0e-82
Identity = 164/202 (81.19%), Postives = 172/202 (85.15%), Query Frame = 1

Query: 1   MVTALCANISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNV 60
           M+TAL   +SASPS GRCKYTGQSVRAVPIRVLTVGKKRSRGVQLL+DEYIDKL NYC+V
Sbjct: 1   MITALSTALSASPSGGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHV 60

Query: 61  EDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGN 120
           EDVQLRSNPRNARDP+AQVDDEDVAVVNLLK DDWVVMLDE GKE+SSE MAELVADAGN
Sbjct: 61  EDVQLRSNPRNARDPKAQVDDEDVAVVNLLKPDDWVVMLDENGKELSSELMAELVADAGN 120

Query: 121 T--------------------GASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIA 180
           T                     ASRL+FCIGGPYGHGQQLRQRAN+SIKLSSMVLNHQIA
Sbjct: 121 TVSSCHHAPIVSGNNFNRAIGSASRLSFCIGGPYGHGQQLRQRANLSIKLSSMVLNHQIA 180

Query: 181 LLVLMEQLYSSWTILKGQKYHH 183
           LLVLMEQLY SWTILKGQKYHH
Sbjct: 181 LLVLMEQLYRSWTILKGQKYHH 202

BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|356561909|ref|XP_003549219.1| (PREDICTED: putative RNA methyltransferase At5g10620 [Glycine max])

HSP 1 Score: 284.3 bits (726), Expect = 1.5e-73
Identity = 140/183 (76.50%), Postives = 165/183 (90.16%), Query Frame = 1

Query: 1   MVTALCANISASPSVGR-CKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCN 60
           M TA+   ++++P+ GR CKY GQSVRA+PIR+L+VGKKRSRG+QL++DEY DKL  YCN
Sbjct: 1   MGTAIQLCVTSNPAQGRKCKYEGQSVRALPIRILSVGKKRSRGLQLMVDEYADKLRYYCN 60

Query: 61  VEDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAG 120
           VED Q+R NPRNARD RAQVD ED AV+NL++SDDWVVMLDE+G++I SEQMAELV DAG
Sbjct: 61  VEDAQIRPNPRNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIESEQMAELVGDAG 120

Query: 121 NTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQK 180
           NTGASRL+FCIGGPYGHG+++RQRAN+SIKLSS+VLNHQIALLVLMEQLY SWTILKGQK
Sbjct: 121 NTGASRLSFCIGGPYGHGRKMRQRANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQK 180

Query: 181 YHH 183
           YHH
Sbjct: 181 YHH 183

BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|571509529|ref|XP_006596143.1| (PREDICTED: putative RNA methyltransferase At5g10620 [Glycine max])

HSP 1 Score: 279.6 bits (714), Expect = 3.8e-72
Identity = 138/183 (75.41%), Postives = 165/183 (90.16%), Query Frame = 1

Query: 1   MVTALCANISASPSVGR-CKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCN 60
           M TAL   +S +P+ GR CKY  QSVRA+PIR+L+VGKKRSRG+QL++DEY+DKL  YC+
Sbjct: 1   MGTALHLCVSFNPAQGRKCKYEAQSVRALPIRILSVGKKRSRGLQLMVDEYVDKLRYYCS 60

Query: 61  VEDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAG 120
           VEDVQ+R NP+NARD RAQVD ED AV+NL++SDDWVVMLDE+G++I SEQMAELV DAG
Sbjct: 61  VEDVQIRPNPQNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIGSEQMAELVGDAG 120

Query: 121 NTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQK 180
           NTGASRL+FCIGGPYGHG+++R+RAN+SIKLSS+VLNHQIALLVL+EQLY SWTILKGQK
Sbjct: 121 NTGASRLSFCIGGPYGHGRKMRERANLSIKLSSLVLNHQIALLVLVEQLYRSWTILKGQK 180

Query: 181 YHH 183
           YHH
Sbjct: 181 YHH 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y5620_ARATH1.2e-6571.19Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE... [more]
RLMH_GRAFK1.0e-2137.34Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0... [more]
RLMH_MYXXD5.7e-2037.50Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK... [more]
RLMH_CLOBA1.3e-1935.26Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain... [more]
RLMH_CLOBM1.7e-1934.62Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain... [more]
Match NameE-valueIdentityDescription
A0A0A0LGS0_CUCSA7.1e-8690.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881670 PE=3 SV=1[more]
A0A0R0FFW9_SOYBN1.1e-7376.50Uncharacterized protein OS=Glycine max GN=GLYMA_17G201400 PE=3 SV=1[more]
K7MMT4_SOYBN1.1e-7376.50Uncharacterized protein OS=Glycine max PE=3 SV=1[more]
A0A0B2SEZ4_GLYSO1.1e-7376.50Putative RNA methyltransferase OS=Glycine soja GN=glysoja_044540 PE=3 SV=1[more]
I1M9Q9_SOYBN2.6e-7275.41Uncharacterized protein OS=Glycine max GN=GLYMA_14G132800 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G10620.16.6e-6771.19 methyltransferases[more]
AT5G10605.11.1e-0877.78 methyltransferases[more]
Match NameE-valueIdentityDescription
gi|659132685|ref|XP_008466330.1|4.2e-8790.66PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo][more]
gi|778687146|ref|XP_011652513.1|1.0e-8590.11PREDICTED: putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus][more]
gi|449437078|ref|XP_004136319.1|4.0e-8281.19PREDICTED: putative RNA methyltransferase At5g10620 isoform X1 [Cucumis sativus][more]
gi|356561909|ref|XP_003549219.1|1.5e-7376.50PREDICTED: putative RNA methyltransferase At5g10620 [Glycine max][more]
gi|571509529|ref|XP_006596143.1|3.8e-7275.41PREDICTED: putative RNA methyltransferase At5g10620 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR003742RlmH-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0006364 rRNA processing
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008168 methyltransferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g04600.1Cp4.1LG02g04600.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003742SPOUT methyltransferase, predictedHAMAPMF_0065823SrRNA_methyltr_Hcoord: 28..182
score: 22
IPR003742SPOUT methyltransferase, predictedPIRPIRSF004505MT_baccoord: 28..182
score: 1.3
IPR003742SPOUT methyltransferase, predictedPFAMPF02590SPOUT_MTasecoord: 30..181
score: 2.7
NoneNo IPR availablePANTHERPTHR33603FAMILY NOT NAMEDcoord: 15..182
score: 4.3
NoneNo IPR availablePANTHERPTHR33603:SF1METHYLTRANSFERASEcoord: 15..182
score: 4.3

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g04600Cucurbita pepo (Zucchini)cpecpeB120
Cp4.1LG02g04600Cucurbita pepo (Zucchini)cpecpeB466
Cp4.1LG02g04600Cucurbita pepo (Zucchini)cpecpeB467
Cp4.1LG02g04600Cucurbita pepo (Zucchini)cpecpeB472
Cp4.1LG02g04600Cucumber (Gy14) v1cgycpeB0436
Cp4.1LG02g04600Cucumber (Gy14) v1cgycpeB0824
Cp4.1LG02g04600Cucurbita maxima (Rimu)cmacpeB052
Cp4.1LG02g04600Cucurbita maxima (Rimu)cmacpeB053
Cp4.1LG02g04600Cucurbita maxima (Rimu)cmacpeB191
Cp4.1LG02g04600Cucurbita maxima (Rimu)cmacpeB779
Cp4.1LG02g04600Cucurbita moschata (Rifu)cmocpeB027
Cp4.1LG02g04600Cucurbita moschata (Rifu)cmocpeB028
Cp4.1LG02g04600Cucurbita moschata (Rifu)cmocpeB167
Cp4.1LG02g04600Cucurbita moschata (Rifu)cmocpeB733
Cp4.1LG02g04600Wild cucumber (PI 183967)cpecpiB540
Cp4.1LG02g04600Wild cucumber (PI 183967)cpecpiB559
Cp4.1LG02g04600Cucumber (Chinese Long) v2cpecuB538
Cp4.1LG02g04600Cucumber (Chinese Long) v2cpecuB557
Cp4.1LG02g04600Bottle gourd (USVL1VR-Ls)cpelsiB463
Cp4.1LG02g04600Bottle gourd (USVL1VR-Ls)cpelsiB478
Cp4.1LG02g04600Watermelon (Charleston Gray)cpewcgB520
Cp4.1LG02g04600Watermelon (Charleston Gray)cpewcgB529
Cp4.1LG02g04600Watermelon (97103) v1cpewmB542
Cp4.1LG02g04600Watermelon (97103) v1cpewmB565
Cp4.1LG02g04600Melon (DHL92) v3.5.1cpemeB513
Cp4.1LG02g04600Melon (DHL92) v3.5.1cpemeB515
Cp4.1LG02g04600Cucumber (Gy14) v2cgybcpeB223
Cp4.1LG02g04600Cucumber (Gy14) v2cgybcpeB384
Cp4.1LG02g04600Melon (DHL92) v3.6.1cpemedB610
Cp4.1LG02g04600Melon (DHL92) v3.6.1cpemedB613
Cp4.1LG02g04600Silver-seed gourdcarcpeB0082
Cp4.1LG02g04600Silver-seed gourdcarcpeB0901
Cp4.1LG02g04600Silver-seed gourdcarcpeB0902
Cp4.1LG02g04600Silver-seed gourdcarcpeB1363
Cp4.1LG02g04600Cucumber (Chinese Long) v3cpecucB0673
Cp4.1LG02g04600Cucumber (Chinese Long) v3cpecucB0690
Cp4.1LG02g04600Wax gourdcpewgoB0688
Cp4.1LG02g04600Wax gourdcpewgoB0720