Cp4.1LG02g04600 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CACGGTGGCAACTTGCTAACTGACACGTCATCATCTCCGTCTTAGCCCGAGGGGTCTGGTTTCTGCTCTCGGCTTCTTATCAATGGTTACTGCTCTCTGTGCTAACATTTCCGCTTCTCCTTCAGGTATCATCGTTTTCTCTACAAGAGATGGAAAATAAAAAAAAACCCTAGAATTTGACCTTGGTTTTGTTCGTCTATGTTCTTACCGGCGTTGTGTAATGTTTCTCCGATTTCGAGCTTTCAGTTGGACGTTGCAAGTACACCGGTCAATCTGTGGTACGTTTATTGTTTCTTTCTGTAAATTTAGTTTCGTTGTTTGGTTCTTGTGATTTTTGTCTTCGTTGTGATTCTTTTTCCTTTTTACGGTCTCGGTCGTTCGATTGGCGTTTCGTTGAGTTTTGCAATTCCATTTTGTTAATATCTGATATATTTGGCTGAGATTTCAGTGTGATTGAGGCTCAGGATGACTGAGTTTTAACTGAGATTAGTCTTTTATGGACAATGAACAGAGAGCGGTGCCGATACGCGTTTTAACTGTTGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGACGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGTATGTGATTGTACGGTTGGTTTTCATTTATCAGTTTTCTGATTTACGCTCGAACTTTCAATCTCTGATGAATGATGCTAATCTTAATGAATGCTTTCCATTCCATGTTTCGTTTCTGCATTATAGGGATCCAAGAGCTCAGGTTGATGACGAAGACGTAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTTATCTCTTAACATTCATTTTCGTTGAATCATTACGAGTTTTGTTATTCTGGCTGTGCTCTTTTATTTGATAACTAGTTTAGAACTCTCTTTGTGAGACCTCGCATCGATTAAAGAGGGGAACGAATGCCAGTGAGAACACTAGACTCCAAAGGGGTGGATGGATTGTGAGATCCCACAACGGTTGGAGAGGGGAACGAAACATTCTTTACAAGGGTGTGGAAACCTCTGTCTAGTTTAGAACTAGTTTAGAGCTCTCCCTGTGAGATCCCACATCGATTGAAAAGGGGAACGAATGCCAACAAGGATGCTGGACCCCGAAAGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACAAAGCATTCTTTGTAAGAGTGTGGAAACCTCTCTCAAACATATGCGTTTTAAAACCTTGAGGGGAAGCCTGAAAGGGAAAGCCCAAACAATATCTGCTAGGGGTGGACTTGAACGGTTACAAATCTCTCTATCTCTCTCTCCGTCCCTCAATTACATCATTCTTTTGCCATCTAAAATGTGAAAGAACATTGATTTCTTGTACTTTTTACTTCAAAAGCATGGATCATAGTGCTTCTTTTTCAGAAAAGAAATATAGTTTGCTATGTGCTTTGATTTTATTTTTAGCCCTTCTTCTAAAACTGATCTTTAAAATAGTTTATAATGGTCGTGCTTACTGCTTACAGTGTGTACCATATCCATTCTGCATATGCACCTTCAGGTTGTGATGTTGGATGAGAAAGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGTGAGTACCATTTCCAATTCAAATCAAATGGGTTGCATTGTTATCATCAATTCATCTCTACTGGACTGATTCCTAATAGTTCAAAGTTCAAAGTTAGTTGCCAAGGCCCCATTTGAGAACGGATTGGTTTGGTTTTTTGTTTTCGAAAATTAAGCTTATAAATACTACTTCCACCTATGGAATTCCTTGTTTTGTTATCCACTTCTTACATTTATTTTAGAAAATCGAGCCAAGTTTTGAAAAACTAAGAAAAGTAGTTTTCAAAAACGTGTTTTTGTCTTTAGATCTTGGCTAAGAATTTGTTTTCTCAAGAGAAATGATACGAAAATAAACATAATTTTCAAAAACAGAATAGTTATCAAACAGGACCCGAGGAGTTTGGACTAGAAATTGAGAGTTTTGCTTGAGGCACCTCGAAGTTAAACCAGCCCACATGTTCAACCTCCATGTCAGTCTAGATCTTAATATGTAACAGTCTCCTGCTTTCTAATTTGATGTTAATAAAGTTTTGTATTAATCACCATGGTCCAATTGTTTCTGTAATCAAATTTGTTAGAACTATGGGTGTATCCCAGAATGAAAATGGCATTTCTTATGTTTCTTCTTCTTTGCAGGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCTTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGGTACTTTTTTGTTTCTTCTCTTCTAACCATTAGTGCATTTCGAGTTTCATTTGCAACATCAAATGCTCCTCAAGCAGAGTTTTCCCAAAATGATGTGTTGGGTGGAGTATCCACTTACATTAATGTGATCTTGTACAATAAAGTAACAACTACTACATAGTGAATATATAGGAATCCAAATCCCCGAATTATTCTGATTATGATCTTCTACATCCTAGGTCTTTCTGTTTCTTCATCTGACTTATGTTCTTTCTTTAGCATTCAGATCAAATGATTCTATGAAATTACGTCGATACTTCTACATATTACAAGTTTTGAGAATCCTTAGAATTACCACTGCGATAATAATCAACTTCTACTCAAGAAGTTTGACATATAAAATACTGAGGGACTTTCAGTTTTGCTCAAATCAGCCAAGAATCATGATGCTCCTCTTTCTCTCTCTATCTCCATCTAGAGATTTATTCAAACCTCAGTTCAACCCTGAAAAACACACAAAACTAACAATGCACCATCTTTGCATCTGTGAAGCTTATTGTACAATATAATGCTTATTCTGAATGTATGTATTCTTTTAGTTCATGGACTATTCTGAAGGGTCAGAAGTACCATCATTAGTAGCAGTGTTCGCATGGTATTTTCGTATCTTTTTTTATTTATTGGAAGAGACCGTTTAATTGTAGTTTATTATTATGTCGGGATGAATATTTAGAGGTTTGAATATCATTTTGGTCCATGTATTTTTGTGATGTCTCACATTGGTTGGGGAGGAGAACATGCCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGAGGAAGCCCGAAAGGGAAAGCCCAAAAAGGACAATATCGGCTAGCGGTGGATCTGGGTCGTTACAATTTTTAGTTCCATTTCATTATTATAGTCTCTTGCCACCAGATGAGGCATCATCTTCCCTGCCCAACCTAGTTGCACCACATGCAGCTCATCAAAATGAAGAGGGTAAGGGGAGTTCTGCCCCGGGGCTAACCCTTCGAGTAGTATTCACTTTTTA CACGGTGGCAACTTGCTAACTGACACGTCATCATCTCCGTCTTAGCCCGAGGGGTCTGGTTTCTGCTCTCGGCTTCTTATCAATGGTTACTGCTCTCTGTGCTAACATTTCCGCTTCTCCTTCAGTTGGACGTTGCAAGTACACCGGTCAATCTGTGAGAGCGGTGCCGATACGCGTTTTAACTGTTGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGACGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGGATCCAAGAGCTCAGGTTGATGACGAAGACGTAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTGTGATGTTGGATGAGAAAGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCTTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGTTCATGGACTATTCTGAAGGGTCAGAAGTACCATCATTAGTAGCAGTGTTCGCATGGTATTTTCGTATCTTTTTTTATTTATTGGAAGAGACCGTTTAATTGTAGTTTATTATTATGTCGGGATGAATATTTAGAGGTTTGAATATCATTTTGGTCCATGTATTTTTGTGATGTCTCACATTGGTTGGGGAGGAGAACATGCCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGAGGAAGCCCGAAAGGGAAAGCCCAAAAAGGACAATATCGGCTAGCGGTGGATCTGGGTCGTTACAATTTTTAGTTCCATTTCATTATTATAGTCTCTTGCCACCAGATGAGGCATCATCTTCCCTGCCCAACCTAGTTGCACCACATGCAGCTCATCAAAATGAAGAGGGTAAGGGGAGTTCTGCCCCGGGGCTAACCCTTCGAGTAGTATTCACTTTTTA ATGGTTACTGCTCTCTGTGCTAACATTTCCGCTTCTCCTTCAGTTGGACGTTGCAAGTACACCGGTCAATCTGTGAGAGCGGTGCCGATACGCGTTTTAACTGTTGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGACGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGGATCCAAGAGCTCAGGTTGATGACGAAGACGTAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTGTGATGTTGGATGAGAAAGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCTTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGTTCATGGACTATTCTGAAGGGTCAGAAGTACCATCATTAG MVTALCANISASPSVGRCKYTGQSVRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNVEDVQLRSNPRNARDPRAQVDDEDVAVVNLLKSDDWVVMLDEKGKEISSEQMAELVADAGNTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYSSWTILKGQKYHH
BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: Y5620_ARATH (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=3 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 1.2e-65 Identity = 126/177 (71.19%), Postives = 154/177 (87.01%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: RLMH_GRAFK (Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) GN=rlmH PE=3 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.0e-21 Identity = 59/158 (37.34%), Postives = 91/158 (57.59%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: RLMH_MYXXD (Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK 1622) GN=rlmH PE=3 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 5.7e-20 Identity = 57/152 (37.50%), Postives = 88/152 (57.89%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: RLMH_CLOBA (Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rlmH PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19 Identity = 55/156 (35.26%), Postives = 93/156 (59.62%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. Swiss-Prot
Match: RLMH_CLOBM (Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rlmH PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19 Identity = 54/156 (34.62%), Postives = 92/156 (58.97%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: A0A0A0LGS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881670 PE=3 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 7.1e-86 Identity = 164/182 (90.11%), Postives = 172/182 (94.51%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: A0A0R0FFW9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G201400 PE=3 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 1.1e-73 Identity = 140/183 (76.50%), Postives = 165/183 (90.16%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: K7MMT4_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 1.1e-73 Identity = 140/183 (76.50%), Postives = 165/183 (90.16%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: A0A0B2SEZ4_GLYSO (Putative RNA methyltransferase OS=Glycine soja GN=glysoja_044540 PE=3 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 1.1e-73 Identity = 140/183 (76.50%), Postives = 165/183 (90.16%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. TrEMBL
Match: I1M9Q9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G132800 PE=3 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 2.6e-72 Identity = 138/183 (75.41%), Postives = 165/183 (90.16%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. TAIR10
Match: AT5G10620.1 (AT5G10620.1 methyltransferases) HSP 1 Score: 250.8 bits (639), Expect = 6.6e-67 Identity = 126/177 (71.19%), Postives = 154/177 (87.01%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. TAIR10
Match: AT5G10605.1 (AT5G10605.1 methyltransferases) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|659132685|ref|XP_008466330.1| (PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo]) HSP 1 Score: 329.3 bits (843), Expect = 4.2e-87 Identity = 165/182 (90.66%), Postives = 175/182 (96.15%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|778687146|ref|XP_011652513.1| (PREDICTED: putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus]) HSP 1 Score: 324.7 bits (831), Expect = 1.0e-85 Identity = 164/182 (90.11%), Postives = 172/182 (94.51%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|449437078|ref|XP_004136319.1| (PREDICTED: putative RNA methyltransferase At5g10620 isoform X1 [Cucumis sativus]) HSP 1 Score: 312.8 bits (800), Expect = 4.0e-82 Identity = 164/202 (81.19%), Postives = 172/202 (85.15%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|356561909|ref|XP_003549219.1| (PREDICTED: putative RNA methyltransferase At5g10620 [Glycine max]) HSP 1 Score: 284.3 bits (726), Expect = 1.5e-73 Identity = 140/183 (76.50%), Postives = 165/183 (90.16%), Query Frame = 1
BLAST of Cp4.1LG02g04600 vs. NCBI nr
Match: gi|571509529|ref|XP_006596143.1| (PREDICTED: putative RNA methyltransferase At5g10620 [Glycine max]) HSP 1 Score: 279.6 bits (714), Expect = 3.8e-72 Identity = 138/183 (75.41%), Postives = 165/183 (90.16%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |