Carg21159 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TAATTTTAATCAAATTTGTTCTCTCTTTTTCTCACGGTGGCAACTTGCTAACTGACACGTCATCATCTCCGTCTTAGCCCGAGGGGTCTGGTTTCTGCTATCGGCTTCTTATCAATGGTTACTGCTCTCTGTGCTACCATTTCCGCTTCTCCTTCAGGTATCATCGTTTTCTCTACAATAGAAGGAAAAAGAAACCCTAGAATTTGACCTAGGTTTTGTTCGTCTATGTTCTTACCGGCGTTGTGTAATGTTTCTCCGATTTCGAGCTTTCAGTTGGACGTTGCAAGTACACCGGTCAATCTGTGGTACATTTCTTGTTTCTTTAAATTTAGTTTCGTTGTTTGGTTCTTGTGATTTTTGTCTTCGTTGTGATTCTTTTTCCTTTTTACGATCTCGATCGTTCGATTGACGTTTCGTTGTGTTTTGCAATTCCATTTATTAATATCTGATATATTTGGCTGAGATTTCAGTGTGGTTGAGGCTCAGGATGACTGAGTTTTAACTGAGATTAGTCTTTTATGGACAATGAACAGAGAGCGGTGCCGATACGCGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGATGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGTATGTGATTGTACGGTTGGTTTTCATTTATCAGTTTTCCTATTTACGCTCGAACTTCCAATCTCTGATGAATGATGCTAATCTTAATGAATGCTTTTCATTCCATGTTTCGTTTCTGCATTATAGGGATCCAAGAGCTCAGGTTGATGATGAGGACATAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTTGTCTCTTAACATTCATTTTCGTTGAATCATTACGAGTTTTGTTATTCTGGCTGTGCTCTTTTATTTGGTAACTAGTTTAGAACTCTCTTTGTGAGACCTCACGTCGATTAAAGAGGGGAACAAATGCCAGAGAGGACACTGGACTCCAAAGGGGGTGGATTGTGAAATCCCACGCTGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGTTTAGAACTAGTTTAGAGCTGTCCCTGTGAGATCCCACATCGATTGAAAACGGGGAACGAATGCCAACGAGGACGCTGGACCCCAAAAGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGAAACAAAGCATTCTTTGTAAGGGCGTGGAAACTTCTCTCTAGCATATGCATTTTAAAACCTTGAGGGAAGCCTGAAAGGGAAAGCCCAAAGAAGACAATATCTACTAGTGGTGGACTTGGACGGTTACAAATCTCTCTCTCCGTCCCTCAATTACATCAGTCTTTTGCCAGCTAAAATGTGAAAGAAAATTGATCAGAGTGCTTCTTTTTCAGAAAAGAAATATAGTTTGCTATGTGCTTTGATTTTATTTTTAGCCCTTCTTCTAAAACTGATCTTTGAAATAGTTTATAATGGTCGTGCTTACTGCTTACAGTGTGTACCATATCCATTCTGCATATGCACCTTCAGGTTGTGATGTTGGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGTGAGTACCATTTCCAATTCAAATCAAATGGGTTGCATTGTTATCATCAATTCATCTCTACTGGACTGATTCCTAATAGTTCAAAGTTCAAAGTTAGTGGCTAAGGCCCCATTTGAGAACGAATTGGTTTGGTTTTTTGTTTTCGAAAATTAAGCTTATAAATACTACTTCCACCTATGGATTTCCTTGTTTTGTTATCCACTTGTTACGTCTATTTTAAAAAATCGAGCCAAAGTTTTGAAAAACTAAGAAAACTAGTTTTCAAAAACTTGTTTTTGTCTTTGGATCTTGGCTAAGAATTTGTTTTCTCAAGAGAAATGATACGAAAATAAACACAATTTTCAAAAACAAAATAGTTATCTAACAGGAGTTTTTGCTTGAGGCACCTCTAAGTTAAACCAGCCCACATGTTCAACCTCCATGTCAGTCTAGATCTTAATATGTAACAGTCTCCTGCTTTCTAATTTGATGTTAAGAAAGTTTTGTATTAATCACCATGGTTTAATTGTTTCTGTAATCAAATTTGTTAGAACTATGGGTGTATCCCAGAATGAAAATGGCATTTCTTATGTTTCTTCTTCTTTGCAGGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCCTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGGTACTTTTTTTGTTTCTTCTCTTCTAATCATTAGTGATTTCGAGTTTCATTTGCAACATCAAATGCTCCTCAAGCAGAGCTTTCCCAAAATGATGTGTTGGGTGGAGTATCCACTTACATTAATGTGATCTAGTACAATAAAGTAACAAGTACCACATAGTGAATATATAGAAATCCAAATCCAAATCCACCGAATTACTCCGCTTATGATCTTCTACATTCTAGGTCTTCCCGTTGCTTCATCTTATTTATGTTCTTCCTATAGCATTTAGACCGAATGACTATGAAATTACGTCGATACTTCTTCATATTACGAATATCGTAGGAAACATCTCTATTTTTTTCTCTTGAGAATCCTTAGAATTACGACTTCGATAATAATGAACTCAAGAGGTTAGACGTATAAAATACTGTGGGACTTTCAGTTTTGCTCAAATCAGCCAAGAATCATGATGCTCCTCTTTCTCTCTCTATCTCCATCTAGAGATTTATTCAAACCTCAATTCAACCCTGAAAAACAGACAAAACTAACAATGCACCATCTTTGCATCTGCGAAGCTTTTTGTATTATATAATGCTTATTCTGAATGTATGTATTCTTTTAGGTCATGGACTATTCTGAAGGGTCAGAAGTACCATCATTAGTAGCAGTGTTCGTACGGTATTTTCATATCTTTTTTTATTTATTGGAAGAGACCTTTTAATGGTAGTTTATTATTGTGTCGGGATGAATATTTAGAAGTTTAAATATCATTTTGGTCCATGTACTTTTAGTCTCATTTCATTATTATAGTCTCTTACAAACAAACTCGTACTTCTTGATAGTTTGTCGTCGGGACGGGGCAGGGGCTTCCTCTGCCATCACCATCAGACCTATCTAGTGAGTTCTTGTGGAGTGGGTCGGATACCTAATTTGGCTGTAGCACATCAGCTAAATATAGAGGGTGAGGGGAGTTTCATCCCGAGGCTATCCCGAGGCTGCCCCTTCAAGCAGTATTCACCTTAAAAAAAAAAAAATTAAGAAAATTTGTTATAGGTGACAAAATTAATTGTTAGTTTTGTGTTTTTAAATATTATGTTTATTTCTTCATATTTTTTCAATATATTTTTCACCTTTTCATAAAAACATATTTCATTTCATGGCAAAATTTCAAAATCACGAACAATTTATTATTACTACTACTTTATTTTCAAAAACAAATTGTTTAAGATTTTGAAAATATTTATAAAATGTAGTGGATAAATGTTTAAACTTAATTTTTAAACCTAAAAAACAAAAATAAAATAGTTAGCAAACGTCAGGCGTAAGTTGTATGGGTTTATAAATATAATTTTATATGTTATTTGTGAATTTTAAAAAAAAATTCACAATGTATGAAAAATAATTTAACATATTAAATTAGAGGTCGGCTTGAATTATCGGACCGCTAGAACGGTGTTCGTATCAACGGTCATGTTGAAAATTACGCGCGTTTTATTAAACGGGAAAATTGTAAGGTGGCGGCAAACAAGTCATCACGTGGACCTAATTCAAACGTATCAACGCCACGTCACAGCCAACTATAATACACGTGTCATCATCTCAGCTAATTAAATCTTCACAGGGCAACTTAAGACCATATCAGCATTTCAACAATGGAATCCCATTCTCGTCTCTTCAATTGTTGAGAACACTCCCTACTTCTTCCTCTCTGAAACCTGCGGTCCAAATTGCCTCAAAATCTGCTCGCCATCAATTTTTCCGACGAATCTCGACCATGAATTCGAGATCGAAGCTAGATTCTAG TAATTTTAATCAAATTTGTTCTCTCTTTTTCTCACGGTGGCAACTTGCTAACTGACACGTCATCATCTCCGTCTTAGCCCGAGGGGTCTGGTTTCTGCTATCGGCTTCTTATCAATGGTTACTGCTCTCTGTGCTACCATTTCCGCTTCTCCTTCAGGTATCATCGTTTTCTCTACAATAGAAGGAAAAAGAAACCCTAGAATTTGACCTAGGTTTTGTTCGTCTATGTTCTTACCGGCGTTGTGTAATGTTTCTCCGATTTCGAGCTTTCAGTTGGACGTTGCAAGTACACCGGTCAATCTGTGGTACATTTCTTGTTTCTTTAAATTTAGTTTCGTTGTTTGGTTCTTGTGATTTTTGTCTTCGTTGTGATTCTTTTTCCTTTTTACGATCTCGATCGTTCGATTGACGTTTCGTTGTGTTTTGCAATTCCATTTATTAATATCTGATATATTTGGCTGAGATTTCAGTGTGGTTGAGGCTCAGGATGACTGAGTTTTAACTGAGATTAGTCTTTTATGGACAATGAACAGAGAGCGGTGCCGATACGCGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGATGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGGATCCAAGAGCTCAGGTTGATGATGAGGACATAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTGTGATGTTGGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCCTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGGGGCTTCCTCTGCCATCACCATCAGACCTATCTAGTGAGTTCTTGTGGAGTGGGTCGGATACCTAATTTGGCTGTAGCACATCAGCTAAATATAGAGGGGCAACTTAAGACCATATCAGCATTTCAACAATGGAATCCCATTCTCGTCTCTTCAATTGTTGAGAACACTCCCTACTTCTTCCTCTCTGAAACCTGCGGTCCAAATTGCCTCAAAATCTGCTCGCCATCAATTTTTCCGACGAATCTCGACCATGAATTCGAGATCGAAGCTAGATTCTAG ATGGACAATGAACAGAGAGCGGTGCCGATACGCGTTTTAACTGTGGGGAAGAAGAGGTCTCGTGGCGTTCAGCTTCTCATTGATGAGTATATTGACAAGCTCAATAACTACTGTAATGTGGAAGATGTTCAACTGCGATCAAATCCTAGAAATGCGCGGGATCCAAGAGCTCAGGTTGATGATGAGGACATAGCTGTTGTGAATCTTCTCAAGTCCGACGATTGGGTTGTGATGTTGGATGAGAATGGGAAAGAGATATCCTCCGAGCAGATGGCTGAGTTGGTGGCAGATGCAGGCAATACAGGTGCTTCAAGATTAGCATTTTGCATTGGTGGACCTTATGGCCATGGACAACAACTGCGACAACGAGCTAACGTATCGATCAAGCTGTCCTCCATGGTCTTAAATCATCAAATTGCATTACTTGTGCTTATGGAACAACTTTACAGGGGCTTCCTCTGCCATCACCATCAGACCTATCTAGTGAGTTCTTGTGGAGTGGGTCGGATACCTAATTTGGCTGTAGCACATCAGCTAAATATAGAGGGGCAACTTAAGACCATATCAGCATTTCAACAATGGAATCCCATTCTCGTCTCTTCAATTGTTGAGAACACTCCCTACTTCTTCCTCTCTGAAACCTGCGGTCCAAATTGCCTCAAAATCTGCTCGCCATCAATTTTTCCGACGAATCTCGACCATGAATTCGAGATCGAAGCTAGATTCTAG MDNEQRAVPIRVLTVGKKRSRGVQLLIDEYIDKLNNYCNVEDVQLRSNPRNARDPRAQVDDEDIAVVNLLKSDDWVVMLDENGKEISSEQMAELVADAGNTGASRLAFCIGGPYGHGQQLRQRANVSIKLSSMVLNHQIALLVLMEQLYRGFLCHHHQTYLVSSCGVGRIPNLAVAHQLNIEGQLKTISAFQQWNPILVSSIVENTPYFFLSETCGPNCLKICSPSIFPTNLDHEFEIEARF
BLAST of Carg21159 vs. NCBI nr
Match: XP_022940478.1 (putative RNA methyltransferase At5g10620 [Cucurbita moschata]) HSP 1 Score: 283.1 bits (723), Expect = 8.8e-73 Identity = 147/155 (94.84%), Postives = 148/155 (95.48%), Query Frame = 0
BLAST of Carg21159 vs. NCBI nr
Match: XP_023524400.1 (putative RNA methyltransferase At5g10620 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 278.1 bits (710), Expect = 2.8e-71 Identity = 144/155 (92.90%), Postives = 146/155 (94.19%), Query Frame = 0
BLAST of Carg21159 vs. NCBI nr
Match: XP_022982492.1 (putative RNA methyltransferase At5g10620 [Cucurbita maxima] >XP_022982493.1 putative RNA methyltransferase At5g10620 [Cucurbita maxima]) HSP 1 Score: 276.2 bits (705), Expect = 1.1e-70 Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 0
BLAST of Carg21159 vs. NCBI nr
Match: XP_008466330.1 (PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo] >XP_008466331.1 PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo]) HSP 1 Score: 271.6 bits (693), Expect = 2.7e-69 Identity = 137/155 (88.39%), Postives = 147/155 (94.84%), Query Frame = 0
BLAST of Carg21159 vs. NCBI nr
Match: XP_022131264.1 (putative RNA methyltransferase At5g10620 isoform X2 [Momordica charantia]) HSP 1 Score: 268.5 bits (685), Expect = 2.3e-68 Identity = 136/155 (87.74%), Postives = 147/155 (94.84%), Query Frame = 0
BLAST of Carg21159 vs. TAIR10
Match: AT5G10620.1 (methyltransferases) HSP 1 Score: 214.2 bits (544), Expect = 9.2e-56 Identity = 106/155 (68.39%), Postives = 132/155 (85.16%), Query Frame = 0
BLAST of Carg21159 vs. TAIR10
Match: AT5G10605.1 (methyltransferases) HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of Carg21159 vs. Swiss-Prot
Match: sp|Q9LXB4|Y5620_ARATH (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana OX=3702 GN=At5g10620 PE=3 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.7e-54 Identity = 106/155 (68.39%), Postives = 132/155 (85.16%), Query Frame = 0
BLAST of Carg21159 vs. Swiss-Prot
Match: sp|A0M0D0|RLMH_GRAFK (Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) OX=411154 GN=rlmH PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 8.6e-19 Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 0
BLAST of Carg21159 vs. Swiss-Prot
Match: sp|A0PXE8|RLMH_CLONN (Ribosomal RNA large subunit methyltransferase H OS=Clostridium novyi (strain NT) OX=386415 GN=rlmH PE=3 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 4.2e-18 Identity = 54/155 (34.84%), Postives = 87/155 (56.13%), Query Frame = 0
BLAST of Carg21159 vs. Swiss-Prot
Match: sp|B2V1Q9|RLMH_CLOBA (Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain Alaska E43 / Type E3) OX=508767 GN=rlmH PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17 Identity = 53/155 (34.19%), Postives = 90/155 (58.06%), Query Frame = 0
BLAST of Carg21159 vs. Swiss-Prot
Match: sp|A7FZD1|RLMH_CLOB1 (Ribosomal RNA large subunit methyltransferase H OS=Clostridium botulinum (strain ATCC 19397 / Type A) OX=441770 GN=rlmH PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 3.6e-17 Identity = 51/147 (34.69%), Postives = 85/147 (57.82%), Query Frame = 0
BLAST of Carg21159 vs. TrEMBL
Match: tr|A0A1S3CQZ8|A0A1S3CQZ8_CUCME (putative RNA methyltransferase At5g10620 OS=Cucumis melo OX=3656 GN=LOC103503770 PE=3 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69 Identity = 137/155 (88.39%), Postives = 147/155 (94.84%), Query Frame = 0
BLAST of Carg21159 vs. TrEMBL
Match: tr|A0A0A0LGS0|A0A0A0LGS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881670 PE=3 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 4.3e-68 Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0
BLAST of Carg21159 vs. TrEMBL
Match: tr|A0A2P4MHB7|A0A2P4MHB7_QUESU (Putative rna methyltransferase at5g10620 OS=Quercus suber OX=58331 GN=CFP56_17194 PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.7e-61 Identity = 118/155 (76.13%), Postives = 139/155 (89.68%), Query Frame = 0
BLAST of Carg21159 vs. TrEMBL
Match: tr|A0A1R3GVA9|A0A1R3GVA9_COCAP (Putative SPOUT methyltransferase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23110 PE=4 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 8.8e-61 Identity = 118/144 (81.94%), Postives = 135/144 (93.75%), Query Frame = 0
BLAST of Carg21159 vs. TrEMBL
Match: tr|A0A2I4GP49|A0A2I4GP49_9ROSI (putative RNA methyltransferase At5g10620 isoform X2 OS=Juglans regia OX=51240 GN=LOC109009592 PE=3 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 2.6e-60 Identity = 118/155 (76.13%), Postives = 139/155 (89.68%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |