Cp4.1LG02g03060 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g03060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 3392487 .. 3396072 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCGGTAATTACATGAATTCATCAGATAAATACATAGTGTATGTATATATGTCTATTTATTTATTTATGTAGGGAGGGAATTTGAACTCTGATCTTTGGATTTAAGATTATAGGCTCAATTTGACATTTATATCTTTAATTTATATATTATATGCATTTAACAAATAACAAAAACTATTCACTCTTTTTAGTACGAAATATAATATTGAAAACAATATTAAATATTGGTCCTTCGGACACCTTACACAGCATACAACAATATATGGAGAAACAACAGCAATTACTAAAGCAAACACACACACCCAAAGGGAGAATGGTTCCCCTTTTGTGTGTGTGTGTGTGTGTGGTGGGGGAATGGGGTGTAGAAAGAAACAGTTGCATTATTCAAATATTGTCACTACTACATGAAAACCCTTGAATGAAAGGCCATCAAGAGAGTGAAGTCCAACAGTCCTTAGATTCATGTCCCTCGCATTGCCCTGACAGCTTGAAACCTTGGTTCCTTTGGAAGGAACTTCTGCTCAGCATAAACCGACATGTAGTCTCCAAACACAAACTTGGGATATCCTTTTTCCACCTCCTGGTTTGCTTTATTCACCAGCTTTGGTGCCGGAGCTATGATGGCTTCCATTGATGGGTTGTAAAACGAAGCAAGGGATCTCCTATTCCCATTTGGGGAGGGCAGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCATCCTGGAAGAGCAAGATGACACCACCAGCATCGGTATGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAACGCCTTGTCCAGCCCATCGCCACCATTGCAGGCAGCCTTTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACCTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAATATTCGTGAGTTGCTTTCAAAACCTACTCTCTGTTTGTAAGAAAAATTGATTGCATGATATATTTTCACGAAAAAGCATAAAGTTTGAAGTGTAGGTGCATGCTTACTTGAATCCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGTTTTGAACTCTTGAAATTCTCTTCTCTTTCCAGCTTGTAGCACTCTGAACAAACCTTCTTCACCCTCTCCAGGAGCTTTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGGTAACATATATTTTAGTCCACAATATTATAGAACATTTAATTAGCGCTCTTGCATGAAAACATTGACCAACTTGAGTATAACTCACTCAACTGGTTAAGACATTATATCTCCGTTAAAAAGATAAATTCAAATAGCTACCTCTTGAAAAACCGTTACTCAATGAATAGAATAACTAATAAGTTTGTGCGAACTACCTGAAAGAATCCCCATTCTTCACAGCCATTAGCTATCTGAGCCAATGTCTTGGCCCTTTCTTCTCCATCAAGCTTTGAGAAATCAATGACTGGGATTGCCATTAGAATTCAAAAACACTGTATTTTAGGAAGAGAAGTTGAGAAGATGGATTAAGATCTTAAGGTGATGTAGTTGAATGAGAGAGTTTATGTTGGTGGGTTTGGAAGGGAAAGGGCAGTCCCTATTTATAAGGGCTTCCCTCCAACTTGGATGTCAACCATTTGTTTATTAAATCCCTTTTCTTTTAAAATAAGAGCCCCCCCTTGAAATGGGACGGTGACTTTTTTAGTAAAGAATTGTTCAATAGTCAATGCCCTCTGAAGTTCTACCTCTGTTTGCAACACATTGCTGAAGGCACTCAACTCTACGTGGGGTCCCACACACCTCGTCTTGCAATTAATTAAATCGTTGCCGACTGTTTTGATTGGCTCCAATCTCTTAAAACTTGGAGGCTACCAATCATGGGGCTACCATGGACAAGTGCATAATCATTTTATAATGATCCGATTGCTTGATGAACAAATTTTTATGTTTTAGTTCTTAATCAGCGGTATTATTTTTTAATTCAAGTCTTATTGTTCTAAAATTTATACCATTTTTGTTTGTGATTGTTTAGATTTACTGATAGTGATGTAAACTCGTGGCTGTGGCATAATTCTTATTAAGCTGGCAAAGTGGAATTACGCACTCAACCGAGGTAAGTCTCTAATCCTTCTAAATGTTTATGATATCGTTAAAATTTGAATTTTCTTTTAGGTGGATTTACTATGCTATCACGTTTAATCAATCAATAGGAAGGTTGTAATCGAGCGTTCTTAAATGGTAAGGACTAAATTGAAATATTACCTAAATATAAGAACTAAAATGTTTGTGTAGTAGTAAAATATGATAGGTTAAGATAGTGATATGAGATAAATAAACTAAGCAAATGATAAGGTTAATAGGCATGATATTAATCTTACTTAAAACATAAATCTATGCCGACTACCGTTGATTATGTTGACTTTTGATCTTCTAGGTCCTAACTTTGACTCTCACATGGATACGCTTTTGATTATCAATGGTTTACCTAAATATTTAATTACTTCTTACACATAGTTTGTGGGTTAAGGAAAATAGGCAGCATCGTATCATGGCTTTTAAGTTTTAACATACATAAAGGGAAATAACCTTAATTATTGGATTAAATATTAATAAAATATTTAATAGATAATCATTAAATTACACACTTTTGGTTGGCCTATTTTTGTAAATCACCATATTTTAAAATAATTTTTAACACTTTTCTTAATTTTCAATTTTCTAAATTTCTAGATTTGTTGTTTTATTTACCTATTCATTTCATTGGAATTATTGAAATTTTGAATTTTTATTTAATTTTGATTGAGGTATGTTTATGTTTATTTTGATAATAAATATAAGTTAGGGTAAGTGAGAATTAGTTAAATTAATGGTCATAAATTGTTTAATGCAATGAATCAATGGATTTCTATAAATAGAGCATAAATTAAAATAATGTGTGGAGTGGGAGACAAACAAATCACAGATTGAAATAGAAATTAAATATAAATAATTTCAAAATCAAATCCATATCAATGAGTCAAGTGGGAAGGAAAAAGCCATATAGATGCTTCCAAAACTAGAAAATAAATTATAAAATGTCTTGTTTCTTTATTTTAAATAAATAATTGTAATTGTTAGGCTTTATTTTTATTATTTTCTATTATTTTTATATTTTAAAATAAAGGGGAATAATGACCCATAATTCATTATGCATTGCAATGTATACTTGGCAAATCCATATCCTTAGGATTTGATTCCAAGTGTTGCAATTTTAGGGCCCCAAGGATCTGTATAAAAATTTAAAATACAAATAATCATGTCATTTTTATTAAATATTTACATTATTTTTTAAATATTAT

mRNA sequence

ATGAACTCGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCATCCTGGAAGAGCAAGATGACACCACCAGCATCGGTATGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAACGCCTTGTCCAGCCCATCGCCACCATTGCAGGCAGCCTTTATGTATCCCTCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGCACTCTGAACAAACCTTCTTCACCCTCTCCAGGAGCTTTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGATTTACTGATAGTGATGTAAACTCGTGGCTGTGGCATAATTCTTATTAAGCTGGCAAAGTGGAATTACGCACTCAACCGAGGTAAGTCTCTAATCCTTCTAAATGTTTATGATATCGTTAAAATTTGAATTTTCTTTTAGGTGGATTTACTATGCTATCACGTTTAATCAATCAATAGGAAGGTTGTAATCGAGCGTTCTTAAATGGTAAGGACTAAATTGAAATATTACCTAAATATAAGAACTAAAATGTTTGTGTAGTAGTAAAATATGATAGGTTAAGATAGTGATATGAGATAAATAAACTAAGCAAATGATAAGGTTAATAGGCATGATATTAATCTTACTTAAAACATAAATCTATGCCGACTACCGTTGATTATGTTGACTTTTGATCTTCTAGGTCCTAACTTTGACTCTCACATGGATACGCTTTTGATTATCAATGGTTTACCTAAATATTTAATTACTTCTTACACATAGTTTGTGGGTTAAGGAAAATAGGCAGCATCGTATCATGGCTTTTAAGTTTTAACATACATAAAGGGAAATAACCTTAATTATTGGATTAAATATTAATAAAATATTTAATAGATAATCATTAAATTACACACTTTTGGTTGGCCTATTTTTGTAAATCACCATATTTTAAAATAATTTTTAACACTTTTCTTAATTTTCAATTTTCTAAATTTCTAGATTTGTTGTTTTATTTACCTATTCATTTCATTGGAATTATTGAAATTTTGAATTTTTATTTAATTTTGATTGAGGTATGTTTATGTTTATTTTGATAATAAATATAAGTTAGGGTAAGTGAGAATTAGTTAAATTAATGGTCATAAATTGTTTAATGCAATGAATCAATGGATTTCTATAAATAGAGCATAAATTAAAATAATGTGTGGAGTGGGAGACAAACAAATCACAGATTGAAATAGAAATTAAATATAAATAATTTCAAAATCAAATCCATATCAATGAGTCAAGTGGGAAGGAAAAAGCCATATAGATGCTTCCAAAACTAGAAAATAAATTATAAAATGTCTTGTTTCTTTATTTTAAATAAATAATTGTAATTGTTAGGCTTTATTTTTATTATTTTCTATTATTTTTATATTTTAAAATAAAGGGGAATAATGACCCATAATTCATTATGCATTGCAATGTATACTTGGCAAATCCATATCCTTAGGATTTGATTCCAAGTGTTGCAATTTTAGGGCCCCAAGGATCTGTATAAAAATTTAAAATACAAATAATCATGTCATTTTTATTAAATATTTACATTATTTTTTAAATATTAT

Coding sequence (CDS)

ATGAACTCGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCATCCTGGAAGAGCAAGATGACACCACCAGCATCGGTATGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAACGCCTTGTCCAGCCCATCGCCACCATTGCAGGCAGCCTTTATGTATCCCTCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGCACTCTGAACAAACCTTCTTCACCCTCTCCAGGAGCTTTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGATTTACTGA

Protein sequence

MNSNPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVILEEQDDTTSIGMRTEAVHQLRVWAWWVVTDFGSKERLVQPIATIAGSLYVSLRNVGGPFVVIMEKEDIFPIKIFQLLAALAFQQIIQELHSTLNKPSSPSPGAFLESHGSPAEIQIY
Homology
[Close]
BLAST of Cp4.1LG02g03060 vs. TrEMBL
Match: C0P9U6_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.5e-08
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1 

Query: 6   VPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVILEEQDDTTSIGMRT 65
           V + LV  +   L L+  V D GV     ++PLP  + L+A+HLV+LE+Q D   +G+R 
Sbjct: 105 VHDALVPPVGDHLQLVADVGDDGVAHGRHVHPLPAPEQLQAAHLVVLEQQHDAAGVGVRA 164

Query: 66  EAVHQLRVWAWWVVTDFGSKERLVQP 92
           EAV ++R  A  V    G++ R V+P
Sbjct: 165 EAVDEVRARARRVRAHLGAERRAVRP 190

[Close]
BLAST of Cp4.1LG02g03060 vs. TrEMBL
Match: A0A0N7KQW9_ORYSJ (Os09g0451266 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os09g0451266 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 1   MNSNPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVILEEQDDTTS 60
           +  +PV + LV ++   L L+  VDD GV     ++PL + + L+A+  V+LEEQDD   
Sbjct: 87  LRHHPVDHALVPAVGDHLQLVAEVDDDGVAHGRHVHPLAVLEQLEATDAVVLEEQDDAAG 146

Query: 61  IGMRTEAVHQLRVWAWWVVTDFGSK 86
           +G+  EA+ ++   A  V  D G++
Sbjct: 147 VGVGAEALDEVGARARRVAADLGAE 171

[Close]
BLAST of Cp4.1LG02g03060 vs. TrEMBL
Match: A0A0P0XNU9_ORYSJ (Os09g0451133 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os09g0451133 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 1   MNSNPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVILEEQDDTTS 60
           +  +PV + LV ++   L L+  VDD GV     ++PL + + L+A+  V+LEEQDD   
Sbjct: 79  LRHHPVHHALVPAVGDHLQLVAEVDDDGVAHGRHVHPLAVLEQLEATDAVVLEEQDDAAG 138

Query: 61  IGMRTEAVHQLRVWAWWVVTDFGSK 86
           +G+  EA+ ++   A  V  D G++
Sbjct: 139 VGVGAEALDEVGARARRVAADLGAE 163

[Close]
BLAST of Cp4.1LG02g03060 vs. NCBI nr
Match: gi|223973507|gb|ACN30941.1| (unknown [Zea mays])

HSP 1 Score: 65.9 bits (159), Expect = 7.9e-08
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1 

Query: 6   VPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVILEEQDDTTSIGMRT 65
           V + LV  +   L L+  V D GV     ++PLP  + L+A+HLV+LE+Q D   +G+R 
Sbjct: 105 VHDALVPPVGDHLQLVADVGDDGVAHGRHVHPLPAPEQLQAAHLVVLEQQHDAAGVGVRA 164

Query: 66  EAVHQLRVWAWWVVTDFGSKERLVQP 92
           EAV ++R  A  V    G++ R V+P
Sbjct: 165 EAVDEVRARARRVRAHLGAERRAVRP 190

[Close]
BLAST of Cp4.1LG02g03060 vs. NCBI nr
Match: gi|937933471|dbj|BAT08386.1| (Os09g0451266, partial [Oryza sativa Japonica Group])

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 1   MNSNPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVILEEQDDTTS 60
           +  +PV + LV ++   L L+  VDD GV     ++PL + + L+A+  V+LEEQDD   
Sbjct: 87  LRHHPVDHALVPAVGDHLQLVAEVDDDGVAHGRHVHPLAVLEQLEATDAVVLEEQDDAAG 146

Query: 61  IGMRTEAVHQLRVWAWWVVTDFGSK 86
           +G+  EA+ ++   A  V  D G++
Sbjct: 147 VGVGAEALDEVGARARRVAADLGAE 171

[Close]
BLAST of Cp4.1LG02g03060 vs. NCBI nr
Match: gi|937933469|dbj|BAT08384.1| (Os09g0451133, partial [Oryza sativa Japonica Group])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 1   MNSNPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVILEEQDDTTS 60
           +  +PV + LV ++   L L+  VDD GV     ++PL + + L+A+  V+LEEQDD   
Sbjct: 79  LRHHPVHHALVPAVGDHLQLVAEVDDDGVAHGRHVHPLAVLEQLEATDAVVLEEQDDAAG 138

Query: 61  IGMRTEAVHQLRVWAWWVVTDFGSK 86
           +G+  EA+ ++   A  V  D G++
Sbjct: 139 VGVGAEALDEVGARARRVAADLGAE 163

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g03060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g03060 vs. TrEMBL
Match NameE-valueIdentityDescription
C0P9U6_MAIZE5.5e-0838.37Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
A0A0N7KQW9_ORYSJ1.0e-0634.12Os09g0451266 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os09g0451266 ... [more]
A0A0P0XNU9_ORYSJ1.4e-0634.12Os09g0451133 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os09g0451133 ... [more]
BLAST of Cp4.1LG02g03060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g03060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223973507|gb|ACN30941.1|7.9e-0838.37unknown [Zea mays][more]
gi|937933471|dbj|BAT08386.1|1.5e-0634.12Os09g0451266, partial [Oryza sativa Japonica Group][more]
gi|937933469|dbj|BAT08384.1|2.0e-0634.12Os09g0451133, partial [Oryza sativa Japonica Group][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g03060.1Cp4.1LG02g03060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g03060Carg00315Silver-seed gourdcarcpeB0943
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g03060Wax gourdcpewgoB0713
Cp4.1LG02g03060Cucurbita pepo (Zucchini)cpecpeB468
Cp4.1LG02g03060Cucumber (Gy14) v1cgycpeB0322
Cp4.1LG02g03060Cucurbita maxima (Rimu)cmacpeB054
Cp4.1LG02g03060Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g03060Cucurbita moschata (Rifu)cmocpeB029
Cp4.1LG02g03060Cucurbita moschata (Rifu)cmocpeB448
Cp4.1LG02g03060Wild cucumber (PI 183967)cpecpiB575
Cp4.1LG02g03060Cucumber (Chinese Long) v2cpecuB571
Cp4.1LG02g03060Cucumber (Chinese Long) v2cpecuB574
Cp4.1LG02g03060Bottle gourd (USVL1VR-Ls)cpelsiB455
Cp4.1LG02g03060Watermelon (Charleston Gray)cpewcgB488
Cp4.1LG02g03060Watermelon (97103) v1cpewmB581
Cp4.1LG02g03060Melon (DHL92) v3.5.1cpemeB539
Cp4.1LG02g03060Cucumber (Gy14) v2cgybcpeB548
Cp4.1LG02g03060Melon (DHL92) v3.6.1cpemedB639
Cp4.1LG02g03060Silver-seed gourdcarcpeB1454
Cp4.1LG02g03060Cucumber (Chinese Long) v3cpecucB0708
Cp4.1LG02g03060Cucumber (Chinese Long) v3cpecucB0711