Carg00315 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00315
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_001 : 1723332 .. 1724479 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAACAACAGCAAATTACAAAAGCAAACATACGCCCCCAAAGGGAGAATGGTTCCCCTTTTGTGTGCGTGTGTGTGTGGTGGGGGAATGAGGTGTAGAAAGAAACAGTTGCATTATTCAAATATTGTCACTACTACATGAAAACCCTTGAATGAAAGGCCATCAAGAGAGTGAAGTCCAACAGTCCTTAGATTCATGTCCCTCGCATTGCCCTGACAGCTTGAAACCTTGGTTCCTTTGGAAGGAACTTCTGCTCAGCATAAATCGACATGTAGTCTCCAAACACAAACTTGGGATATCCTTTTTCCACCTCCTGGTTTGCTTTATTCACCAGCTTTGGTGCCGGAGCTATGATGGCTTCCATTGATGGGTTGTAAAACGAAGCAAGGGATCTCCTATTCCCATTTGGGGAGGGCAGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCGTCCTGGAAGAGCAAGATGACACCACCAGCATCGGTGTGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAAGGCCTCGTCCAGCCCATCGCCACCATTGAAGGCAGCCTTTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACCTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAATATTCGTGAGTTGCTTTCAAAACCTACTCTCTGTTTGTAAGAAAATTTGATTGCATGATATATTTTCACGAAAAAGCATAAAGTTTGAAGTGTAGGTGCATGCTTACTTGAATCCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGTTTTGAACTTTTGAAATTCTCCTCTCTTTCCAGCTTGTAGCACTCTGAACAAACCTTCTTCACCCTCTCCAGGAGCTCTTCTGGAATCCCATGGTTCACC

mRNA sequence

ATGGAGAAACAACAGCAAATTACAAAAGCAAACATACGCCCCCAAAGGGAGAATGGTTCCCCTTTTGTGTGCAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCGTCCTGGAAGAGCAAGATGACACCACCAGCATCGGTGTGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAAGGCCTCGTCCAGCCCATCGCCACCATTGAAGGCAGCCTTTATGTATCCCTCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGAGCTCTTCTGGAATCCCATGGTTCACC

Coding sequence (CDS)

ATGGAGAAACAACAGCAAATTACAAAAGCAAACATACGCCCCCAAAGGGAGAATGGTTCCCCTTTTGTGTGCAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGATGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCGTCCTGGAAGAGCAAGATGACACCACCAGCATCGGTGTGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAAGGCCTCGTCCAGCCCATCGCCACCATTGAAGGCAGCCTTTATGTATCCCTCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCTCTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGAGCTCTTCTGGAATCCCATGGTTCACC

Protein sequence

MEKQQQITKANIRPQRENGSPFVCNPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVVLEEQDDTTSIGVRTEAVHQLRVWAWWVVTDFGSKEGLVQPIATIEGSLYVSLRNVGGPFVVIMEKEDIFPIKIFQLLAALAFQQIIQELHRSSSGIPWFT

Homology

[Close]

BLAST of Carg00315 vs. NCBI nr
Match: OAY65523.1 (putative anion transporter 7, partial [Ananas comosus])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 38  DLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVVLEEQDDTTSIGVRTEAVHQLRVWAW 97
           DLNL+T VD  GV   LD+ P  I Q L+A+  VVLEE+DD T + V TEAV ++R WA 
Sbjct: 413 DLNLVTGVDHDGVGDRLDVNPAAILQYLQAADAVVLEEEDDATGVSVGTEAVGEVRAWAR 472

Query: 98  WVVTDFGSKEGLV 111
            VV    +KEG +
Sbjct: 473 RVVAHLRAKEGCI 485

[Close]

BLAST of Carg00315 vs. NCBI nr
Match: BAT08386.1 (Os09g0451266, partial [Oryza sativa Japonica Group])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 15  QRENGSPFVC----NPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHL 74
           +R +G P       +PV + LV ++   L L+  VDD GV     ++PL + + L+A+  
Sbjct: 76  ERRDGHPVAVGLRHHPVDHALVPAVGDHLQLVAEVDDDGVAHGRHVHPLAVLEQLEATDA 135

Query: 75  VVLEEQDDTTSIGVRTEAVHQLRVWAWWVVTDFGSKEG 109
           VVLEEQDD   +GV  EA+ ++   A  V  D G++ G
Sbjct: 136 VVLEEQDDAAGVGVGAEALDEVGARARRVAADLGAEGG 173

[Close]

BLAST of Carg00315 vs. NCBI nr
Match: ACN30941.1 (unknown [Zea mays])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 27  VPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVVLEEQDDTTSIGVRT 86
           V + LV  +   L L+  V D GV     ++PLP  + L+A+HLVVLE+Q D   +GVR 
Sbjct: 105 VHDALVPPVGDHLQLVADVGDDGVAHGRHVHPLPAPEQLQAAHLVVLEQQHDAAGVGVRA 164

Query: 87  EAVHQLRVWAWWVVTDFGSKEGLVQP 113
           EAV ++R  A  V    G++   V+P
Sbjct: 165 EAVDEVRARARRVRAHLGAERRAVRP 190

[Close]

BLAST of Carg00315 vs. NCBI nr
Match: BAT08384.1 (Os09g0451133, partial [Oryza sativa Japonica Group])

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 25  NPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVVLEEQDDTTSIGV 84
           +PV + LV ++   L L+  VDD GV     ++PL + + L+A+  VVLEEQDD   +GV
Sbjct: 82  HPVHHALVPAVGDHLQLVAEVDDDGVAHGRHVHPLAVLEQLEATDAVVLEEQDDAAGVGV 141

Query: 85  RTEAVHQLRVWAWWVVTDFGSKEG 109
             EA+ ++   A  V  D G++ G
Sbjct: 142 GAEALDEVGARARRVAADLGAEGG 165

[Close]

BLAST of Carg00315 vs. NCBI nr
Match: BAT12994.1 (Os11g0187001, partial [Oryza sativa Japonica Group])

HSP 1 Score: 60.8 bits (146), Expect = 5.1e-06
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 27  VPNTLVSSIAQDLNLITCVDDYGVRQWLDIYP----LPIFQDLKASHLVVLEEQDDTTSI 86
           VP  L ++IA  L+L+  VDD GV   LD+ P      +   L+A+  VVLEE+D+   +
Sbjct: 63  VPCALEAAIANHLDLVPGVDDDGVLDGLDVDPPAVAAAVGDHLEAAEAVVLEEEDEAAGV 122

Query: 87  GVRTEAVHQLRVWAWWVVTDFGSKEGL 110
           GV  EAV +LR  A  VV   G+ EGL
Sbjct: 123 GVGAEAVDELRPRARRVVAHLGAVEGL 149

[Close]

BLAST of Carg00315 vs. TrEMBL
Match: tr|A0A199ULB9|A0A199ULB9_ANACO (Putative anion transporter 7 (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_03015 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 38  DLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVVLEEQDDTTSIGVRTEAVHQLRVWAW 97
           DLNL+T VD  GV   LD+ P  I Q L+A+  VVLEE+DD T + V TEAV ++R WA 
Sbjct: 413 DLNLVTGVDHDGVGDRLDVNPAAILQYLQAADAVVLEEEDDATGVSVGTEAVGEVRAWAR 472

Query: 98  WVVTDFGSKEGLV 111
            VV    +KEG +
Sbjct: 473 RVVAHLRAKEGCI 485

[Close]

BLAST of Carg00315 vs. TrEMBL
Match: tr|A0A0N7KQW9|A0A0N7KQW9_ORYSJ (Os09g0451266 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0451266 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.0e-08
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 15  QRENGSPFVC----NPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHL 74
           +R +G P       +PV + LV ++   L L+  VDD GV     ++PL + + L+A+  
Sbjct: 76  ERRDGHPVAVGLRHHPVDHALVPAVGDHLQLVAEVDDDGVAHGRHVHPLAVLEQLEATDA 135

Query: 75  VVLEEQDDTTSIGVRTEAVHQLRVWAWWVVTDFGSKEG 109
           VVLEEQDD   +GV  EA+ ++   A  V  D G++ G
Sbjct: 136 VVLEEQDDAAGVGVGAEALDEVGARARRVAADLGAEGG 173

[Close]

BLAST of Carg00315 vs. TrEMBL
Match: tr|C0P9U6|C0P9U6_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 27  VPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVVLEEQDDTTSIGVRT 86
           V + LV  +   L L+  V D GV     ++PLP  + L+A+HLVVLE+Q D   +GVR 
Sbjct: 105 VHDALVPPVGDHLQLVADVGDDGVAHGRHVHPLPAPEQLQAAHLVVLEQQHDAAGVGVRA 164

Query: 87  EAVHQLRVWAWWVVTDFGSKEGLVQP 113
           EAV ++R  A  V    G++   V+P
Sbjct: 165 EAVDEVRARARRVRAHLGAERRAVRP 190

[Close]

BLAST of Carg00315 vs. TrEMBL
Match: tr|A0A0P0XNU9|A0A0P0XNU9_ORYSJ (Os09g0451133 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0451133 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 25  NPVPNTLVSSIAQDLNLITCVDDYGVRQWLDIYPLPIFQDLKASHLVVLEEQDDTTSIGV 84
           +PV + LV ++   L L+  VDD GV     ++PL + + L+A+  VVLEEQDD   +GV
Sbjct: 82  HPVHHALVPAVGDHLQLVAEVDDDGVAHGRHVHPLAVLEQLEATDAVVLEEQDDAAGVGV 141

Query: 85  RTEAVHQLRVWAWWVVTDFGSKEG 109
             EA+ ++   A  V  D G++ G
Sbjct: 142 GAEALDEVGARARRVAADLGAEGG 165

[Close]

BLAST of Carg00315 vs. TrEMBL
Match: tr|A0A0N7KSJ5|A0A0N7KSJ5_ORYSJ (Os11g0187001 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0187001 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-06
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 27  VPNTLVSSIAQDLNLITCVDDYGVRQWLDIYP----LPIFQDLKASHLVVLEEQDDTTSI 86
           VP  L ++IA  L+L+  VDD GV   LD+ P      +   L+A+  VVLEE+D+   +
Sbjct: 63  VPCALEAAIANHLDLVPGVDDDGVLDGLDVDPPAVAAAVGDHLEAAEAVVLEEEDEAAGV 122

Query: 87  GVRTEAVHQLRVWAWWVVTDFGSKEGL 110
           GV  EAV +LR  A  VV   G+ EGL
Sbjct: 123 GVGAEAVDELRPRARRVVAHLGAVEGL 149

The following BLAST results are available for this feature:

BLAST of Carg00315 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY65523.1	2.9e-09	50.68	putative anion transporter 7, partial [Ananas comosus]	[more]
BAT08386.1	1.2e-07	35.71	Os09g0451266, partial [Oryza sativa Japonica Group]	[more]
ACN30941.1	2.7e-07	39.53	unknown [Zea mays]	[more]
BAT08384.1	3.5e-07	38.10	Os09g0451133, partial [Oryza sativa Japonica Group]	[more]
BAT12994.1	5.1e-06	42.53	Os11g0187001, partial [Oryza sativa Japonica Group]	[more]

BLAST of Carg00315 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg00315 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00315 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A199ULB9\|A0A199ULB9_ANACO	1.9e-09	50.68	Putative anion transporter 7 (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_03015...	[more]
tr\|A0A0N7KQW9\|A0A0N7KQW9_ORYSJ	8.0e-08	35.71	Os09g0451266 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os09...	[more]
tr\|C0P9U6\|C0P9U6_MAIZE	1.8e-07	39.53	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
tr\|A0A0P0XNU9\|A0A0P0XNU9_ORYSJ	2.3e-07	38.10	Os09g0451133 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os09...	[more]
tr\|A0A0N7KSJ5\|A0A0N7KSJ5_ORYSJ	3.4e-06	42.53	Os11g0187001 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os11...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00315-RA	Carg00315-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00315	ClCG11G015960	Watermelon (Charleston Gray)	carwcgB0647
Carg00315	CmaCh09G007710	Cucurbita maxima (Rimu)	carcmaB0932
Carg00315	CmaCh01G013670	Cucurbita maxima (Rimu)	carcmaB0947
Carg00315	CmoCh09G007630	Cucurbita moschata (Rifu)	carcmoB0906
Carg00315	Cp4.1LG02g03060	Cucurbita pepo (Zucchini)	carcpeB0943

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00315	Silver-seed gourd	carcarB574
Carg00315	Cucumber (Gy14) v2	carcgybB0663
Carg00315	Cucurbita moschata (Rifu)	carcmoB0922
Carg00315	Cucurbita pepo (Zucchini)	carcpeB0947
Carg00315	Wild cucumber (PI 183967)	carcpiB0699
Carg00315	Cucumber (Chinese Long) v2	carcuB0688
Carg00315	Cucumber (Chinese Long) v3	carcucB0701
Carg00315	Bottle gourd (USVL1VR-Ls)	carlsiB609
Carg00315	Melon (DHL92) v3.5.1	carmeB0673
Carg00315	Melon (DHL92) v3.6.1	carmedB0685
Carg00315	Watermelon (97103) v1	carwmB0672
Carg00315	Watermelon (97103) v2	carwmbB0692
Carg00315	Wax gourd	carwgoB0789