Cp4.1LG01g26360 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g26360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Heat shock protein DnaJ, cysteine-rich domain-containing protein
Location	Cp4.1LG01 : 21313105 .. 21313780 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGAGAATTGACGACAGTAAAGCCCAAAGAAAGGAAGATGGCGTGGTGCGGCAGCTCTGTCTCAAAGAGCAACAACAGCACCTTCCCGTTCCCATTCCCACCCCATGGATTCGCCATACTGCCACAAAATAAAAGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGNACTGCCACAAAATAAAAGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGCTGCCCAAAAGGTGCCAAACGTGTGGAGGTAAAGGGGCTATCGATTGTCCCGGATGCAAGGTTACCCATCCCATCCTTCTCAATTCTCAATGCTCAATTCACTCCACATTTAACATCTTCTCCTCTTATAATACCTTCATGTGTTTGCTTTCAACTTAATTTCCTTCATGTGTTTGCTTTCAACTCAATTTCAGGGGACTGGGAGAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAGTCATTCACTCACTCACTCACTCAATCTCTTACTTTTGTTCCAACTCAAACTAATTTAAACTCATCTATTCATATCCTTTCATTTTGCTTGTTTCAGATGTTTCGAGTGCCAAGGATTTGGATTAAAGAGCTGCCCTGACTGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGA

mRNA sequence

GAGGAGAATTGACGACAGTAAAGCCCAAAGAAAGGAAGATGGCGTGGTGCGGCAGCTCTGTCTCAAAGAGCAACAACAGCACCTTCCCGTTCCCATTCCCACCCCATGGATTCGCCATACTGCCACAAAATAAAAGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGNACTGCCACAAAATAAAAGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGCTGCCCAAAAGGTGCCAAACGTGTGGAGGTAAAGGGGCTATCGATTGTCCCGGATGCAAGGTTACCCATCCCATCCTTCTCAATTCTCAATGCTCAATTCACTCCACATTTAACATCTTCTCCTCTTATAATACCTTCATGTGGGACTGGGAGAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTCGAGTGCCAAGGATTTGGATTAAAGAGCTGCCCTGACTGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGA

Coding sequence (CDS)

ATGGCGTGGTGCGGCAGCTCTGTCTCAAAGAGCAACAACAGCACCTTCCCGTTCCCATTCCCACCCCATGGATTCGCCATACTGCCACAAAATAAAAGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGNACTGCCACAAAATAAAAGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGCTGCCCAAAAGGTGCCAAACGTGTGGAGGTAAAGGGGCTATCGATTGTCCCGGATGCAAGGTTACCCATCCCATCCTTCTCAATTCTCAATGCTCAATTCACTCCACATTTAACATCTTCTCCTCTTATAATACCTTCATGTGGGACTGGGAGAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTCGAGTGCCAAGGATTTGGATTAAAGAGCTGCCCTGACTGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGA

Protein sequence

MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKSRSKPSNIPFAAAPKFSXCHKIKVEVNHPTSPSLQRQNFRCPKGAKRVEVKGLSIVPDARLPIPSFSILNAQFTPHLTSSPLIIPSCGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER

Homology

[Close]

BLAST of Cp4.1LG01g26360 vs. TrEMBL
Match: A0A0A0LIM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G238860 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 87  IVPDARLPIPSFSILNAQFTPHLTSSPLIIPSC-GTGRNKKNGNIFERWKCFECQGFGLK 146
           IVP A LP  + ++L  +         +  P C GTG+NKKNGNIFERWKCFECQGFGLK
Sbjct: 31  IVPFAALP--TSNLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLK 90

Query: 147 SCPDCGKGGLTPEQRGER 164
           SCP CGKGGLTPEQRGER
Sbjct: 91  SCPQCGKGGLTPEQRGER 106

[Close]

BLAST of Cp4.1LG01g26360 vs. TrEMBL
Match: A0A0D9WBU2_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 117 PSC-GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 164
           P C GTGRNKKNGNIFERWKCF+CQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 69  PGCKGTGRNKKNGNIFERWKCFDCQGFGLKSCPSCGKGGLTPEQRGER 116

[Close]

BLAST of Cp4.1LG01g26360 vs. TrEMBL
Match: A0A0D9WBU3_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 117 PSC-GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 164
           P C GTGRNKKNGNIFERWKCF+CQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 55  PGCKGTGRNKKNGNIFERWKCFDCQGFGLKSCPSCGKGGLTPEQRGER 102

[Close]

BLAST of Cp4.1LG01g26360 vs. TrEMBL
Match: A0A0D9ZT63_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 117 PSC-GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 164
           P C GTGRNKKNGNIFERWKCF+CQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 58  PGCKGTGRNKKNGNIFERWKCFDCQGFGLKSCPSCGKGGLTPEQRGER 105

[Close]

BLAST of Cp4.1LG01g26360 vs. TrEMBL
Match: A0A0D3G2B3_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 117 PSC-GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 164
           P C GTGRNKKNGNIFERWKCF+CQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 58  PGCKGTGRNKKNGNIFERWKCFDCQGFGLKSCPSCGKGGLTPEQRGER 105

[Close]

BLAST of Cp4.1LG01g26360 vs. TAIR10
Match: AT1G22630.1 (AT1G22630.1 unknown protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-21
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 117 PSC-GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 164
           P C GTG+NKKNGN+FERWKCF+CQGFG+KSCP CGKGGLTPEQRGER
Sbjct: 63  PGCKGTGKNKKNGNMFERWKCFDCQGFGMKSCPKCGKGGLTPEQRGER 110

[Close]

BLAST of Cp4.1LG01g26360 vs. NCBI nr
Match: gi|449470832|ref|XP_004153120.1| (PREDICTED: uncharacterized protein LOC101218183 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 87  IVPDARLPIPSFSILNAQFTPHLTSSPLIIPSC-GTGRNKKNGNIFERWKCFECQGFGLK 146
           IVP A LP  + ++L  +         +  P C GTG+NKKNGNIFERWKCFECQGFGLK
Sbjct: 31  IVPFAALP--TSNLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLK 90

Query: 147 SCPDCGKGGLTPEQRGER 164
           SCP CGKGGLTPEQRGER
Sbjct: 91  SCPQCGKGGLTPEQRGER 106

[Close]

BLAST of Cp4.1LG01g26360 vs. NCBI nr
Match: gi|922549396|ref|XP_013602684.1| (PREDICTED: uncharacterized protein LOC106310037 [Brassica oleracea var. oleracea])

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 117 PSC-GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 164
           P C GTGRNKKNGNIFERWKCFECQGFG+KSCP CGKGGLTPEQRGER
Sbjct: 73  PGCKGTGRNKKNGNIFERWKCFECQGFGMKSCPKCGKGGLTPEQRGER 120

[Close]

BLAST of Cp4.1LG01g26360 vs. NCBI nr
Match: gi|1002856145|ref|XP_015692939.1| (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X2 [Oryza brachyantha])

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 117 PSC-GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 164
           P C GTGRNKKNGNIFERWKCF+CQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 54  PGCKGTGRNKKNGNIFERWKCFDCQGFGLKSCPSCGKGGLTPEQRGER 101

[Close]

BLAST of Cp4.1LG01g26360 vs. NCBI nr
Match: gi|659118711|ref|XP_008459263.1| (PREDICTED: uncharacterized protein LOC103498437 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 117 PSC-GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 164
           P C GTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 60  PGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

[Close]

BLAST of Cp4.1LG01g26360 vs. NCBI nr
Match: gi|514744163|ref|XP_004960564.1| (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Setaria italica])

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 117 PSC-GTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 164
           P C GTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 70  PGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPSCGKGGLTPEQRGER 117

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g26360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g26360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIM5_CUCSA	1.4e-19	65.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G238860 PE=4 SV=1	[more]
A0A0D9WBU2_9ORYZ	3.0e-19	91.67	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]
A0A0D9WBU3_9ORYZ	3.0e-19	91.67	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]
A0A0D9ZT63_9ORYZ	3.0e-19	91.67	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]
A0A0D3G2B3_9ORYZ	3.0e-19	91.67	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]

BLAST of Cp4.1LG01g26360 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22630.1	1.7e-21	85.42	unknown protein	[more]

BLAST of Cp4.1LG01g26360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470832\|ref\|XP_004153120.1\|	2.0e-19	65.38	PREDICTED: uncharacterized protein LOC101218183 [Cucumis sativus]	[more]
gi\|922549396\|ref\|XP_013602684.1\|	4.3e-19	91.67	PREDICTED: uncharacterized protein LOC106310037 [Brassica oleracea var. oleracea...	[more]
gi\|1002856145\|ref\|XP_015692939.1\|	4.3e-19	91.67	PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic isoform X2 [Or...	[more]
gi\|659118711\|ref\|XP_008459263.1\|	4.3e-19	91.67	PREDICTED: uncharacterized protein LOC103498437 [Cucumis melo]	[more]
gi\|514744163\|ref\|XP_004960564.1\|	4.3e-19	91.67	PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Setaria itali...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g26360.1	Cp4.1LG01g26360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 120..150 score: 6.9
None	No IPR available	PANTHER	PTHR10168:SF94	SUBFAMILY NOT NAMED	coord: 120..150 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g26360	CmaCh04G030360	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g26360	CmoCh04G031580	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g26360	Carg06109	Silver-seed gourd	carcpeB0034

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g26360	Bottle gourd (USVL1VR-Ls)	cpelsiB322
Cp4.1LG01g26360	Watermelon (Charleston Gray)	cpewcgB367
Cp4.1LG01g26360	Melon (DHL92) v3.5.1	cpemeB400
Cp4.1LG01g26360	Cucumber (Gy14) v2	cgybcpeB214
Cp4.1LG01g26360	Melon (DHL92) v3.6.1	cpemedB465
Cp4.1LG01g26360	Cucumber (Chinese Long) v3	cpecucB0482
Cp4.1LG01g26360	Wax gourd	cpewgoB0538
Cp4.1LG01g26360	Wild cucumber (PI 183967)	cpecpiB385
Cp4.1LG01g26360	Cucumber (Chinese Long) v2	cpecuB386