CmoCh04G031580 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G031580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Glutaredoxin domain-containing cysteine-rich protein CG12206
Location	Cmo_Chr04 : 21851746 .. 21852481 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCAAAGAAAGGAAGATGGCGTGGTGTGGCAGCTCTGTCTCAAAGAGCAACAACAGCACCTCCCCGTTCCCATTCCCACCCCATGGATTCGCCATACTGCCACAAAATAAATGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGCTGCCCAAAAGGTGCCAAACGTGTGGAGGTAAAGGGGCTATCGATTGTCCCGGATGCAAGGTTACCCATCCCATCCTTCTCAATTCTCAATTCACTCCACATTTAACATCTTCTTCTCTTATAATACCTTCATGTGTTTGCTTTCAACTTAATTTCCTTCATGTGTTTGCTTTCAACTCAATATCAGGGGACTGGGAGAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAGTCATTCACTCACTCACTCAATCTCTTACTTTTGTTCCAACTCAAACTAATTTAAATTCATCTATTCATATCCTTTCATTTTGCTTGTTTCAGATGTTTCGAGTGCCAAGGATTTGGATTAAAGAGCTGCCCTGACTGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAATGCACTCGCACCAGTTTATATTTATCTACTTCAACTTGTCTATTTTCTAATGTGATGCATTTGCATTGTATCATATATATATATATATATGGTTTCCAATTCTAAGACTTCACTACATTTTGTTCTAAAAAGTGATAAAAGTAAATTATGGTTCTTTG

mRNA sequence

GCCCAAAGAAAGGAAGATGGCGTGGTGTGGCAGCTCTGTCTCAAAGAGCAACAACAGCACCTCCCCGTTCCCATTCCCACCCCATGGATTCGCCATACTGCCACAAAATAAATGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGCTGCCCAAAAGGTGCCAAACGTGTGGAGGTAAAGGGGCTATCGATTGTCCCGGATGCAAGGGGACTGGGAGAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTCGAGTGCCAAGGATTTGGATTAAAGAGCTGCCCTGACTGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAATGCACTCGCACCAGTTTATATTTATCTACTTCAACTTGTCTATTTTCTAATGTGATGCATTTGCATTGTATCATATATATATATATATATGGTTTCCAATTCTAAGACTTCACTACATTTTGTTCTAAAAAGTGATAAAAGTAAATTATGGTTCTTTG

Coding sequence (CDS)

ATGGCGTGGTGTGGCAGCTCTGTCTCAAAGAGCAACAACAGCACCTCCCCGTTCCCATTCCCACCCCATGGATTCGCCATACTGCCACAAAATAAATGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGCTGCCCAAAAGGTGCCAAACGTGTGGAGGTAAAGGGGCTATCGATTGTCCCGGATGCAAGGGGACTGGGAGAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTCGAGTGCCAAGGATTTGGATTAAAGAGCTGCCCTGACTGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAA

Homology

[Close]

BLAST of CmoCh04G031580 vs. TrEMBL
Match: A0A0A0LIM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G238860 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.2e-36
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 8   VSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFSL-PKRCQTCGGKGAID 67
           ++ ++ S + FPFP +      ++K +S P++I  PFAA P  +L PKRCQ CGGKGAID
Sbjct: 1   MAATSTSINIFPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAID 60

Query: 68  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 114
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 61  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

[Close]

BLAST of CmoCh04G031580 vs. TrEMBL
Match: A0A0D2TWV4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G288600 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-31
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1


Query: 31  NKCRSKPSNIPFAAA---PKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCF 90
           NK   KP   P  AA   P  S+ KRCQ CGGKGAI+CPGCKGTG+NKKNGNIFERWKCF
Sbjct: 22  NKQLIKPRAFPVFAAKSGPLNSILKRCQKCGGKGAIECPGCKGTGKNKKNGNIFERWKCF 81

Query: 91  ECQGFGLKSCPDCGKGGLTPEQRGER 114
           +CQGFGLKSCP+CG+GGLTPEQRGER
Sbjct: 82  DCQGFGLKSCPNCGQGGLTPEQRGER 107

[Close]

BLAST of CmoCh04G031580 vs. TrEMBL
Match: V4KWY0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009125mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 7.7e-30
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 34  RSKPSNIPFAAAPKFSLP---KRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQ 93
           RS    +  A +  FSL    K C+TCG KGAIDCPGCKGTG+NKKNGNIFERWKCFECQ
Sbjct: 39  RSDSIKVSAAKSGNFSLGSIFKSCETCGAKGAIDCPGCKGTGKNKKNGNIFERWKCFECQ 98

Query: 94  GFGLKSCPDCGKGGLTPEQRGER 114
           GFG+KSCP CGKGGLTPEQRGER
Sbjct: 99  GFGMKSCPKCGKGGLTPEQRGER 121

[Close]

BLAST of CmoCh04G031580 vs. TrEMBL
Match: A0A061FJN8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_036436 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-29
Identity = 66/102 (64.71%), Postives = 75/102 (73.53%), Query Frame = 1


Query: 16  SPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKF----SLPKRCQTCGGKGAIDCPGCKGT 75
           SP   P    A+L       +P  +   AA KF    S+ KRC+ CGGKGAI+CPGCKGT
Sbjct: 17  SPLLLPRCSPAMLNIGNKEPRPRVVTVFAA-KFGALNSILKRCEKCGGKGAIECPGCKGT 76

Query: 76  GRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 114
           G+NKKNGNIFERWKCF+CQGFGLKSCP CG+GGLTPEQRGER
Sbjct: 77  GKNKKNGNIFERWKCFDCQGFGLKSCPSCGQGGLTPEQRGER 117

[Close]

BLAST of CmoCh04G031580 vs. TrEMBL
Match: M0TUP0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-29
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 34  RSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFG 93
           RS  S   + A     + K CQ CGGKGAI+CPGCKGTG+NKKNGNIFERWKCF+CQGFG
Sbjct: 26  RSGVSASKYGAVSVKPVSKGCQKCGGKGAIECPGCKGTGKNKKNGNIFERWKCFDCQGFG 85

Query: 94  LKSCPDCGKGGLTPEQRGER 114
           LKSCP CGKGGLTPEQRGER
Sbjct: 86  LKSCPSCGKGGLTPEQRGER 105

[Close]

BLAST of CmoCh04G031580 vs. TAIR10
Match: AT1G22630.1 (AT1G22630.1 unknown protein)

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-31
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 49  SLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPE 108
           S+ K C+TCG KGAI+CPGCKGTG+NKKNGN+FERWKCF+CQGFG+KSCP CGKGGLTPE
Sbjct: 46  SIFKSCETCGAKGAIECPGCKGTGKNKKNGNMFERWKCFDCQGFGMKSCPKCGKGGLTPE 105

Query: 109 QRGER 114
           QRGER
Sbjct: 106 QRGER 110

[Close]

BLAST of CmoCh04G031580 vs. NCBI nr
Match: gi|659118711|ref|XP_008459263.1| (PREDICTED: uncharacterized protein LOC103498437 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 4.6e-36
Identity = 74/109 (67.89%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 7   SVSKSNNSTSPFPFPPHGFAILPQNKCRSKPS-NIPFAAAPKFSL-PKRCQTCGGKGAID 66
           + + ++ S + FPFP +      ++K +S P+  +PFAA P  +L PKRCQ CGGKGAID
Sbjct: 2   AATSTSTSINIFPFPSYQIV---RSKTKSSPNITVPFAALPTSNLLPKRCQKCGGKGAID 61

Query: 67  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 114
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 62  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

[Close]

BLAST of CmoCh04G031580 vs. NCBI nr
Match: gi|449470832|ref|XP_004153120.1| (PREDICTED: uncharacterized protein LOC101218183 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-35
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 8   VSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFSL-PKRCQTCGGKGAID 67
           ++ ++ S + FPFP +      ++K +S P++I  PFAA P  +L PKRCQ CGGKGAID
Sbjct: 1   MAATSTSINIFPFPSYQIF---RSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAID 60

Query: 68  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 114
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 61  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

[Close]

BLAST of CmoCh04G031580 vs. NCBI nr
Match: gi|823215608|ref|XP_012440550.1| (PREDICTED: glutaredoxin domain-containing cysteine-rich protein CG12206 isoform X1 [Gossypium raimondii])

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-31
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1


Query: 31  NKCRSKPSNIPFAAA---PKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCF 90
           NK   KP   P  AA   P  S+ KRCQ CGGKGAI+CPGCKGTG+NKKNGNIFERWKCF
Sbjct: 22  NKQLIKPRAFPVFAAKSGPLNSILKRCQKCGGKGAIECPGCKGTGKNKKNGNIFERWKCF 81

Query: 91  ECQGFGLKSCPDCGKGGLTPEQRGER 114
           +CQGFGLKSCP+CG+GGLTPEQRGER
Sbjct: 82  DCQGFGLKSCPNCGQGGLTPEQRGER 107

[Close]

BLAST of CmoCh04G031580 vs. NCBI nr
Match: gi|567148773|ref|XP_006416179.1| (hypothetical protein EUTSA_v10009125mg [Eutrema salsugineum])

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 34  RSKPSNIPFAAAPKFSLP---KRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQ 93
           RS    +  A +  FSL    K C+TCG KGAIDCPGCKGTG+NKKNGNIFERWKCFECQ
Sbjct: 39  RSDSIKVSAAKSGNFSLGSIFKSCETCGAKGAIDCPGCKGTGKNKKNGNIFERWKCFECQ 98

Query: 94  GFGLKSCPDCGKGGLTPEQRGER 114
           GFG+KSCP CGKGGLTPEQRGER
Sbjct: 99  GFGMKSCPKCGKGGLTPEQRGER 121

[Close]

BLAST of CmoCh04G031580 vs. NCBI nr
Match: gi|695053769|ref|XP_009414992.1| (PREDICTED: uncharacterized protein LOC103995951 isoform X1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 34  RSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFG 93
           RS  S   + A     + K CQ CGGKGAI+CPGCKGTG+NKKNGNIFERWKCF+CQGFG
Sbjct: 26  RSGVSASKYGAVSVKPVSKGCQKCGGKGAIECPGCKGTGKNKKNGNIFERWKCFDCQGFG 85

Query: 94  LKSCPDCGKGGLTPEQRGER 114
           LKSCP CGKGGLTPEQRGER
Sbjct: 86  LKSCPSCGKGGLTPEQRGER 105

The following BLAST results are available for this feature:

BLAST of CmoCh04G031580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G031580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIM5_CUCSA	7.2e-36	68.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G238860 PE=4 SV=1	[more]
A0A0D2TWV4_GOSRA	2.4e-31	75.58	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G288600 PE=4 SV=1	[more]
V4KWY0_EUTSA	7.7e-30	74.70	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009125mg PE=4 SV=1	[more]
A0A061FJN8_THECC	1.7e-29	64.71	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_036436 PE=4 SV=1	[more]
M0TUP0_MUSAM	1.7e-29	75.00	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]

BLAST of CmoCh04G031580 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22630.1	1.3e-31	83.08	unknown protein	[more]

BLAST of CmoCh04G031580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118711\|ref\|XP_008459263.1\|	4.6e-36	67.89	PREDICTED: uncharacterized protein LOC103498437 [Cucumis melo]	[more]
gi\|449470832\|ref\|XP_004153120.1\|	1.0e-35	68.81	PREDICTED: uncharacterized protein LOC101218183 [Cucumis sativus]	[more]
gi\|823215608\|ref\|XP_012440550.1\|	3.4e-31	75.58	PREDICTED: glutaredoxin domain-containing cysteine-rich protein CG12206 isoform ...	[more]
gi\|567148773\|ref\|XP_006416179.1\|	1.1e-29	74.70	hypothetical protein EUTSA_v10009125mg [Eutrema salsugineum]	[more]
gi\|695053769\|ref\|XP_009414992.1\|	2.5e-29	75.00	PREDICTED: uncharacterized protein LOC103995951 isoform X1 [Musa acuminata subsp...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001305	HSP_DnaJ_Cys-rich_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0031072	heat shock protein binding
GO:0051082	unfolded protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G031580.1	CmoCh04G031580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001305	Heat shock protein DnaJ, cysteine-rich domain	GENE3D	G3DSA:2.10.230.10		coord: 48..104 score: 3.
IPR001305	Heat shock protein DnaJ, cysteine-rich domain	unknown	SSF57938	DnaJ/Hsp40 cysteine-rich domain	coord: 47..106 score: 8.6
None	No IPR available	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 45..100 score: 5.0
None	No IPR available	PANTHER	PTHR10168:SF94	SUBFAMILY NOT NAMED	coord: 45..100 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G031580	CmaCh04G030360	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G031580	Cp4.1LG01g26360	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G031580	Carg06109	Silver-seed gourd	carcmoB0033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G031580	Cucumber (Chinese Long) v3	cmocucB0812
CmoCh04G031580	Watermelon (97103) v2	cmowmbB702
CmoCh04G031580	Watermelon (97103) v2	cmowmbB708
CmoCh04G031580	Wax gourd	cmowgoB0870
CmoCh04G031580	Wild cucumber (PI 183967)	cmocpiB695
CmoCh04G031580	Cucumber (Chinese Long) v2	cmocuB684
CmoCh04G031580	Melon (DHL92) v3.5.1	cmomeB671
CmoCh04G031580	Watermelon (Charleston Gray)	cmowcgB622
CmoCh04G031580	Watermelon (97103) v1	cmowmB723
CmoCh04G031580	Bottle gourd (USVL1VR-Ls)	cmolsiB624
CmoCh04G031580	Cucumber (Gy14) v2	cgybcmoB236
CmoCh04G031580	Melon (DHL92) v3.6.1	cmomedB759