Cp4.1LG01g25160 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g25160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Chlorophyll(Ide) b reductase NOL
Location	Cp4.1LG01 : 18481183 .. 18486327 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCGTTCTCCTTCATCTCGCGTAACGGTGGCTTCTTCTTCGTCTCTCCTCCTTCCGGTCTACGCCTATCAATCTGCAAATCGGAGAGTTACAGTCTTTCGATTGGTGGTTCGCGCCAGATCTTGTGAATTCCAGTTCTCTATCCGTGAAGGCTGAAATCTTTCAGCAGAGAGGGCCTATGATTCCTCCTTAGAATGTTTTGATCGCTGGTTCTACTAAAGGTGTGGCGTCCTTTTGTTCATTTTGTTTGTTTGATATATTGCGTTATGCTTTGGTTTCCTGTTGCATCTATTAATTTCCTGCTGGTTTTTTGTTTATAGTTTTGCTTGAACTTATGGCGTCTGGTGTTTGACGTCGTTTTTGTAAGCAAGAAATTCCGAACTGTACTCGCTCAACTGTATTTTTGCTTTTTTGACGAAATTTTGGGTGGTGGAATACATATTTGTTTATCTGATTGACTTGAATTCTTTTTAGGAATTTGGTTTGAGGAACTTCCTGGCTGGCTCTTTCCTCTTAGTTTTATTAAGAATTTGAAGGTATGTTTTAGACTATGATTTCACGTGTACAGTTGCAGTTTGGATTAGTAAGCTTTAAGGTTCACGAGCTTATATCATACGATTGAAGTCAAACTTATTGTTTGGAACGATTGTCGAATGTTTTATTTGTTTGGACTTCGTAGAAAGATGGATACATTGGAGGTTAGAGCCTAATCAATTAAAGTTTGAGTGCTTAAATGAGTGCTAAGATATCCTCCGGATTAATATCCTTCTAATTATCAAGTTAGTCATAAACTTCATAAATTAGGCCTTTGGACATATAATTTTTCAAACTGTTTTGCTACGAGGACCAAAGAACAACCGGTTATTCTTAGGATTTTCATCTAAATCCAAGGAAAATGTTTACTATGTATTTGCACACAGTTACCTGAATTTTCTTGATCGTGTAGATTTAGTCATATTCTAATCACTTACAGATCCTTGGGATGGGAGTTTTTCATTTGAGTGCGGATATAGAGTACTTCTTTGACACATCAGTGCATTTAACTTCCTTATGTTCGTTCGTATGGTGCTTTCTACTCATATTTGCAATGTATTCAGGAATAGGATATGCGGTTGCCAAACAGTTTCTGAAAGCAGGTGACAATGTTGTAATCTGTTCACTATCAGGTAACATATGCACTATGCTCATCATGAAACCTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATTCATGAACACTCGTGTAGGACTCTGAATAAATCTGTACAGGACTGTAAAATATTAACTAAAGAGTTACATTTTCTAGTACTTGCGCACACTTATATAATTATTGCATGTCGAGTTCATTTTTCAGTCATGTTTAGAGTAGGAGCTTCATGAATTAAATGGAGTTTGACTGCAGGTTATTTTGTAAAGTATGTATGAAGCTGTATTTGTAATACATTTCCGCCATCTTACTTATCAGGTATATAGGATATTTGATCAATTCAGCTATTTGGAGAATCTCGAGTCTATGGTTTCATTATTTAACATCGTTATTAGTTTATTTTCCCTGAAGAGTTCAATAATTTTCTTTTTTAATTTTCAAGCTTTGGGTTCTTATGTGTTTGTGGTTATTTTAATTTTATAGATCTATGAGTGGCGTTGTGCACATTCTTTTAACAATTTATTAATACACTTCTGTTCCCATAAAAATGTGTTTGATTTATTGATTAGGTACGGATTCTCCTAATAATCATGATAAGCATCTATGGTTAGCTCCTGCTAAACTTTTTCAATTTAATTTGTTCTTCGCAGATGTTTTTTCATCATTTTTCTATCATTTCCTTGTTTGCCATGTACTATTTGCATTTGGAGCAGTTGCCGACACTTCAAGCTCGTCCTAATCTAATTCTACTTTACAGGGTACTAAATGTGACGTGCGAGAAGGAGAGGATGTAAAAATTGTAGTCAATTTTGTGCAGAAAAGTCTTAAATACATTGATATATGGGTATCTACTTCAAATTGTTCTTTCTCTTCCCCTTCCCTCCCCTTCTACATGAAGACCAAATGAGTAAATCTTGATTTCCATCAACTACAATATAAGTCTATTTGGTATCAAAGAATCTATATGATATTGAACATCTTAGATAGGTGGCCTTTAATGTTTGAACATGAATCATAACCTCGAGACCATCTAAATTTACTTGTCTCTTTTACTTTTGGCTGACTCGTGGTGGTGAAGATGTCGTTAATATAGCAATTTGATTGAAATCTTCAAAAAAAAAATTGAAAGTAGAACATGATATCTCTAGAATAATCCACATATACAGGATTTGTGTGCATGTATACGCTTTTTGTACTTGAGTAAATGAGCAAACACAGTAGGGATAACGCCAGCAATTATGAAATAGTAACTATTGAAATGAGAAATAGGTTGTTGTGTATAATGATGCTATTGAGATGTCCCACTAAAGAAATGCCTCGTGTGGATAGCTTTATCATGTCATTGAGGTTTTTTCATACAATCCTAACACGTGCCTGTCTGAAAAGCGTTGGCCTATACAATGCTTAGATGGACAAAGTATGCATTTTCATAATTTACAATTGCAATATTTAACGTATTATAGGAAACTGGACTTAAAAGAACAAAAAATGTTTCATCGTCTACTATTTCAATTGTTGATTGATTTTGGTGAGAGGATATGATGAGTCTCATACACAGTTTTTTTTATGTCTTATAATTCATACTACTTTGGTGGGATTTTGTTTGCTTCTATTGCTATTTAACGTATTGCAAGAACAATGCAGACCAATAATGCAGGGTCAAATGCTTATAGCTTTAAGCCTTTGCTCGAGACTTCAGATGAAGATCTCATGTGAGCTTCCTCCTTCTGATCTCCAAATCTCAATGACATGAAATGGAAATTCTTTTGGTTTATTCCTTAGACGCTCTCTAATGCAGTGAAGTTGTCACTACAAATGCTCTTGTAAATCATGCATAGTTCCTGACTTCTTGTTTAGGCAATAAAGATGATGTTAAACAAACCTCGAGGAGGTCATATTTTCAACATTGATGGGGCTGGTTCTGATGGGCGACCCACCCCTAGGTACTGTTCTTTCTATTATTAACATTCTCTCTTATGTCTGAACTTGTTATAAAGTTCTTCCTCTTATGTATAATTTTTTTCAAGAAGAATGCAGAAGGCATGAGAAACGCACAAGAAATCTATTGTGCATTTGGATGACATCCACAATGTGCTGCTCATTTCATCTCCATTACTTGAATAACAGATGGAGCAAATAATTTTATACCGAAACGTGTGAAGGTTTATTTCTCTTAAGCACTTCTGATGAATCTAAGGATAAATTAATATGAAATTATTAGGATGAGCCCAGACAGTTTGAATATATGTACAAGAGAAGACTTCAGACCTCCAATTGTTTATGGATGGGCCCTACAATCTATGTTAGAAAAAAAATTATGGTAACGATTGATTTTATATTTTTGTTTCTCTTTTTCCTCGGTAAGACAAATTGTTATATTTTGAAGGAGCCTATTAAGGTGGGTGAGGCTATTTACATGCATTTGTTCTGTTTATATAGTGATCACTTACTCTGTTACTGAAAAATAATAATAATAATAATTGCTCCTGCACTTCTTCTTCATGTCCGCGGCCTTTGAGTTTACAGGTCGCAGAATACCTTGGCCCAAACATAAGATCTATCCCAACCAATGGTTCAACAAGGCCCACGTACATTCGTTTCCTCACTGGACTGAAAGATTACTCTCAATTCTCAGTGGAGAAATGATTAATTACTTCTCAATTAAGTTGAAATGTTTTTTTTTTCTTTTCCTTCATCGTACCATCAACTAATTGTTTCGTGTTTCCCATTTTGTTCAGAGACTTGCTTTTGGTGCTAGAAGAAACAAATATCTTCTAGAAGATTGATAAGATCTTTAAGTACAATTTCCCATCCTGTAAGTTCTATCTGTAAAGCTTCACCTTTATTATTCCTCATCCAGGGGCATGGTTTGTTCACATTTTGTACACTGGTTATTGATTAAGCATGATGGGACCCGTTGGACTGTTCCTAAAAGACGACGCAATGAAATGATGCCATATTGTCTTTGATTTATATATATTTGGAAAACTGTTGTTTTTCATTGATTTACTTATTAGATGATTAATTGTAATTTATCATTCATATCTACCTGAAGTTGCAGCACTATTATCTTTTACCAGACCATTTGTAGAACATTTTCCTTTTTAAAAGGCAACTGAAATGGGGGGTTGGGTTAGCCCCGGTTCTTCAAAGCAATAATCGTCCTTGAATATTCCAGGGTGTGTAAATTTCGGTATGATTTGAGTTGGGCCACTTTTATTTTGAATTTATTATGAAGTTTGGAGATTTACAGATCTAACACTTCTTACACATGAATAATATTTAGGTTGACGATTCAAGACAAGTTAACCTCATCAAGGTATAATGTGTAATAAGTATTTGATCTTGTTTATTATTTTATTGTTGAGGCATTTTCGACATGTTAAAAGATATATTTACCCTGTTTATGAATCTTCAATTATTTTTAGTGTTACCCACTTGGTATAGCAAGTATACTTAATGTTAAAATATGATACCATCAGACAATGAGTTTGTTGATGGTTTTAAGGTTTGATTGTTGTAGGTAAGATTGGCTGTGCGAATCAAACCTCAAAAGCAACTTGCGGGTATGGCCTACAAATTTGGGGTATATCATTGGTTGCAGTACTGGAAAAAATAAATTGAAATTCGAATACGATTAAAATTGGAATGGTATTTGAAAGAAAAAAAAAACAGAGAAAAGGAATCAGATTGGTTTAGTAATGGAGTGTACAGTTTGATTTATCAATTAAATTAATTGTTAAGCAGGCAATAATTTAAAAATAACAATAAGTCTTAGATTTAAAAATAATGTCTTAGATATATCTATCAAATGTAAATTTGTGAAGAAATACTTGACCTTTTCTAATTTCAAATTGAAAAAATGAACAAAAAGAAGAAAAAAGAACCCAAAATGGGAAACATGAAATCTCCAGTACTTTTAAATCGCTAGGCTTGGAAATAAGTTAGGTATTAAGCTCTTAATTTTGTAATGAAACATGAGCCTTTT

mRNA sequence

TTCCGTTCTCCTTCATCTCGCGTAACGGTGGCTTCTTCTTCGTCTCTCCTCCTTCCGGTCTACGCCTATCAATCTGCAAATCGGAGAGTTACAGTCTTTCGATTGGTGGTTCGCGCCAGATCTTGTGAATTCCAGTTCTCTATCCGAATAGGATATGCGGTTGCCAAACAGTTTCTGAAAGCAGGTGACAATGTTGTAATCTGTTCACTATCAGGTACGGATTCTCCTAATAATCATGATAAGCATCTATGGTTAGCTCCTGCTAAACTTTTTCAATTTAATTTGTTCTTCGCAGATGGTACTAAATGTGACGTGCGAGAAGGAGAGGATGTAAAAATTGTAGTCAATTTTGTGCAGAAAAGTCTTAAATACATTGATATATGGGCAATAAAGATGATGTTAAACAAACCTCGAGGAGGTCATATTTTCAACATTGATGGGGCTGGTTCTGATGGGCGACCCACCCCTAGGATGAGCCCAGACAGTTTGAATATATGTACAAGAGAAGACTTCAGACCTCCAATTGTCGCAGAATACCTTGGCCCAAACATAAGATCTATCCCAACCAATGGTTCAACAAGGCCCACGTACATTCGTTTCCTCACTGGACTGAAAGATTACTCTCAATTCTCAGTTGACGATTCAAGACAAGTTAACCTCATCAAGGTAAGATTGGCTGTGCGAATCAAACCTCAAAAGCAACTTGCGGGTATGGCCTACAAATTTGGGGTATATCATTGGTTGCAGTACTGGAAAAAATAAATTGAAATTCGAATACGATTAAAATTGGAATGGTATTTGAAAGAAAAAAAAAACAGAGAAAAGGAATCAGATTGGTTTAGTAATGGAGTGTACAGTTTGATTTATCAATTAAATTAATTGTTAAGCAGGCAATAATTTAAAAATAACAATAAGTCTTAGATTTAAAAATAATGTCTTAGATATATCTATCAAATGTAAATTTGTGAAGAAATACTTGACCTTTTCTAATTTCAAATTGAAAAAATGAACAAAAAGAAGAAAAAAGAACCCAAAATGGGAAACATGAAATCTCCAGTACTTTTAAATCGCTAGGCTTGGAAATAAGTTAGGTATTAAGCTCTTAATTTTGTAATGAAACATGAGCCTTTT

Coding sequence (CDS)

TTCCGTTCTCCTTCATCTCGCGTAACGGTGGCTTCTTCTTCGTCTCTCCTCCTTCCGGTCTACGCCTATCAATCTGCAAATCGGAGAGTTACAGTCTTTCGATTGGTGGTTCGCGCCAGATCTTGTGAATTCCAGTTCTCTATCCGAATAGGATATGCGGTTGCCAAACAGTTTCTGAAAGCAGGTGACAATGTTGTAATCTGTTCACTATCAGGTACGGATTCTCCTAATAATCATGATAAGCATCTATGGTTAGCTCCTGCTAAACTTTTTCAATTTAATTTGTTCTTCGCAGATGGTACTAAATGTGACGTGCGAGAAGGAGAGGATGTAAAAATTGTAGTCAATTTTGTGCAGAAAAGTCTTAAATACATTGATATATGGGCAATAAAGATGATGTTAAACAAACCTCGAGGAGGTCATATTTTCAACATTGATGGGGCTGGTTCTGATGGGCGACCCACCCCTAGGATGAGCCCAGACAGTTTGAATATATGTACAAGAGAAGACTTCAGACCTCCAATTGTCGCAGAATACCTTGGCCCAAACATAAGATCTATCCCAACCAATGGTTCAACAAGGCCCACGTACATTCGTTTCCTCACTGGACTGAAAGATTACTCTCAATTCTCAGTTGACGATTCAAGACAAGTTAACCTCATCAAGGTAAGATTGGCTGTGCGAATCAAACCTCAAAAGCAACTTGCGGGTATGGCCTACAAATTTGGGGTATATCATTGGTTGCAGTACTGGAAAAAATAA

Protein sequence

FRSPSSRVTVASSSSLLLPVYAYQSANRRVTVFRLVVRARSCEFQFSIRIGYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKLFQFNLFFADGTKCDVREGEDVKIVVNFVQKSLKYIDIWAIKMMLNKPRGGHIFNIDGAGSDGRPTPRMSPDSLNICTREDFRPPIVAEYLGPNIRSIPTNGSTRPTYIRFLTGLKDYSQFSVDDSRQVNLIKVRLAVRIKPQKQLAGMAYKFGVYHWLQYWKK

Homology

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BLAST of Cp4.1LG01g25160 vs. Swiss-Prot
Match: NOL_ARATH (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana GN=NOL PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-12
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLSGT-------DSPNNHDKHLWLAPAKLFQFNLFFADGTK 109
           IGYA+A++FLKAGDNVVICS S                +H+W               GTK
Sbjct: 91  IGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGEHVW---------------GTK 150

Query: 110 CDVREGEDVKIVVNFVQKSLKYIDIW 129
           CDV EG+DV+ +V + QK+LKYIDIW
Sbjct: 151 CDVTEGKDVRELVAYSQKNLKYIDIW 161

[Close]

BLAST of Cp4.1LG01g25160 vs. Swiss-Prot
Match: NOL_ORYSJ (Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa subsp. japonica GN=NOL PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-12
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLSG-------TDSPNNH-DKHLWLAPAKLFQFNLFFADGT 109
           IGYA+AK+FLKAGDNVVICS S        TD      ++H+W               G 
Sbjct: 85  IGYALAKEFLKAGDNVVICSRSAERVESAVTDLKKEFGEQHVW---------------GI 144

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIW 129
            CDVREG+DVK +V+F +  +KYIDIW
Sbjct: 145 VCDVREGKDVKALVDFARDKMKYIDIW 156

[Close]

BLAST of Cp4.1LG01g25160 vs. Swiss-Prot
Match: NYC1_ORYSJ (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.6e-06
Identity = 36/95 (37.89%), Postives = 48/95 (50.53%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLSG-------TDSPNNHDKHLWLAPAKLFQFNLFF-ADGT 109
           +G A+A++FL +GD VVI S S         +   N  + L +A  K  +  L     GT
Sbjct: 182 LGKALAREFLLSGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVGT 241

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIWAIKMMLNK 137
            CDV + EDVK +VNF +  L  IDIW      NK
Sbjct: 242 SCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNK 276

[Close]

BLAST of Cp4.1LG01g25160 vs. TrEMBL
Match: A0A0D3FLY5_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33
Identity = 91/203 (44.83%), Postives = 111/203 (54.68%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLSG-------TDSPNNH-DKHLWLAPAKLFQFNLFFADGT 109
           IGYA+AK+FLKAGDNVVICS S        TD      ++H+W               G 
Sbjct: 85  IGYALAKEFLKAGDNVVICSRSAERVESAVTDLKKEFGEQHVW---------------GI 144

Query: 110 KCDVREGEDVKIVVNFVQKSLKYIDIWAIKMMLNKPRGGHIFNIDGAGSDGRPTPR---- 169
            CDVREG+DVK +V+F +  +KYIDIWAI MM N+PRGGHIFNIDGAGSDGRPTPR    
Sbjct: 145 VCDVREGKDVKALVDFARDKMKYIDIWAINMMRNQPRGGHIFNIDGAGSDGRPTPRFAAY 204

Query: 170 -----------------MSPDSLNICTREDFRPPIVAEYLGPN--------------IRS 210
                            +  + +N     +  P +V   L  +              IR+
Sbjct: 205 GATKRSVVHLTKSLQAELQMNEVNNVMVHNLSPGMVTTDLLMSGATTKQVADYLVPNIRA 264

[Close]

BLAST of Cp4.1LG01g25160 vs. TrEMBL
Match: A0A0S3S9U4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G065500 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 77/213 (36.15%), Postives = 104/213 (48.83%), Query Frame = 1


Query: 3   SPSSRV---TVAS------SSSLLLPVYAYQSANRRVTVFRLVVRARSCEFQFSIRI--- 62
           SPSSR+   TVAS      S++  L + A++S N    + +     +     F++ I   
Sbjct: 26  SPSSRLKSYTVASRYNLCISTTATLSLLAFRSPNSPTFLAKATRNTQPMLPPFNVLITGS 85

Query: 63  ----GYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKL-FQFNLFFADGTKCDV 122
               GYA+AK+FLKAGDNV+ICS S        D+ +  A   L  +F   +  GTKCDV
Sbjct: 86  TKGIGYALAKEFLKAGDNVLICSRS--------DERVEAAVQSLRVEFGEQYVWGTKCDV 145

Query: 123 REGED--------------VKIVVN------FVQKSL------KYIDIW----------- 160
           R  ED              + I +N      +  K L        I++            
Sbjct: 146 RNAEDVKNLVSFAQEKLKYIDIWINNAGSNAYSYKPLVEASDEDLIEVVTTNTLGLMICC 205

[Close]

BLAST of Cp4.1LG01g25160 vs. TrEMBL
Match: A0A0L9V3V1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g048300 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 77/213 (36.15%), Postives = 104/213 (48.83%), Query Frame = 1


Query: 3   SPSSRV---TVAS------SSSLLLPVYAYQSANRRVTVFRLVVRARSCEFQFSIRI--- 62
           SPSSR+   TVAS      S++  L + A++S N    + +     +     F++ I   
Sbjct: 26  SPSSRLKSYTVASRYNLCISTTATLSLLAFRSPNSPTFLAKATRNTQPMLPPFNVLITGS 85

Query: 63  ----GYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKL-FQFNLFFADGTKCDV 122
               GYA+AK+FLKAGDNV+ICS S        D+ +  A   L  +F   +  GTKCDV
Sbjct: 86  TKGIGYALAKEFLKAGDNVLICSRS--------DERVEAAVQSLRVEFGEQYVWGTKCDV 145

Query: 123 REGED--------------VKIVVN------FVQKSL------KYIDIW----------- 160
           R  ED              + I +N      +  K L        I++            
Sbjct: 146 RNAEDVKNLVSFAQEKLKYIDIWINNAGSNAYSYKPLVEASDEDLIEVVTTNTLGLMICC 205

[Close]

BLAST of Cp4.1LG01g25160 vs. TrEMBL
Match: A0A118JXU2_CYNCS (Glucose/ribitol dehydrogenase (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_000341 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 54/122 (44.26%), Postives = 62/122 (50.82%), Query Frame = 1


Query: 129 AIKMMLNKPRGGHIFNIDGAGSDGRPTPR-------------MSPDSLNICTREDFRPPI 188
           A+KMMLN+PRGGHIFNIDGAGSDGRPTPR             +    ++     +  P +
Sbjct: 279 AMKMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVAELQMQEVSNVVVHNLSPGM 338

Query: 189 VAEYL---GPNI-------------------------RSIPTNGSTRPTYIRFLTGLKDY 210
           V   L   G N                          RSIP +GSTRPTYIRFLTGLK Y
Sbjct: 339 VTTDLLMSGANTKQAKFFINVLAEPADEVAEYLVPNIRSIPISGSTRPTYIRFLTGLKAY 398

[Close]

BLAST of Cp4.1LG01g25160 vs. TrEMBL
Match: A0A151S9Y2_CAJCA (NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG OS=Cajanus cajan GN=KK1_026498 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 58/149 (38.93%), Postives = 72/149 (48.32%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNNHDKHLWLAPAKLFQFNLFFADGTKCDVREGE 109
           IGYA+AK+FLKAGDNVV+CS S        ++      +   +F      GT CDVR  E
Sbjct: 82  IGYALAKEFLKAGDNVVVCSRSV-------ERVETAVQSLKVEFGEQHVWGTACDVRNAE 141

Query: 110 D--------------VKIVVN-----------FVQKS--------------LKYIDIWAI 160
           D              + I +N            V+ S              L      AI
Sbjct: 142 DVKNLVSFAREKLKYIDIWINNAGSNAYSYKPLVEASDEDLVEVVTTNTLGLMICCREAI 201

[Close]

BLAST of Cp4.1LG01g25160 vs. TAIR10
Match: AT5G04900.1 (AT5G04900.1 NYC1-like)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLSGT-------DSPNNHDKHLWLAPAKLFQFNLFFADGTK 109
           IGYA+A++FLKAGDNVVICS S                +H+W               GTK
Sbjct: 91  IGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGEHVW---------------GTK 150

Query: 110 CDVREGEDVKIVVNFVQKSLKYIDIW 129
           CDV EG+DV+ +V + QK+LKYIDIW
Sbjct: 151 CDVTEGKDVRELVAYSQKNLKYIDIW 161

[Close]

BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: gi|1021559265|ref|XP_016170913.1| (PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X4 [Arachis ipaensis])

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 85/225 (37.78%), Postives = 104/225 (46.22%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNNH---------DKHLW---------------- 109
           IGYA+AK+FLKAGDNV+ICS S  +              ++H+W                
Sbjct: 115 IGYALAKEFLKAGDNVIICSRSSDERVETAVKSLKVEFGEQHVWGSKCDVRNAEDVKNLV 174

Query: 110 -LAPAKLFQFNLFFADGTK-------CDVREGEDVKIVVNFVQKSLKYIDIWAIKMMLNK 169
             +  KL   +++  +                ED+  VV      L      AIKMM ++
Sbjct: 175 SFSQEKLGYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMASQ 234

Query: 170 PRGGHIFNIDGAGSDGRPTPRMSP--------------------------DSLNICTRED 210
           PRGGHIFNIDGAGSDGRPTPR +                              N    + 
Sbjct: 235 PRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQPGMVTTDLLMSGANTKQAKF 294

[Close]

BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: gi|1012225706|ref|XP_015936966.1| (PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X4 [Arachis duranensis])

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 85/225 (37.78%), Postives = 104/225 (46.22%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLSGTDSPNNH---------DKHLW---------------- 109
           IGYA+AK+FLKAGDNV+ICS S  +              ++H+W                
Sbjct: 92  IGYALAKEFLKAGDNVIICSRSSDERVETAVKSLKVEFGEQHVWGSKCDVRNAEDVKNLV 151

Query: 110 -LAPAKLFQFNLFFADGTK-------CDVREGEDVKIVVNFVQKSLKYIDIWAIKMMLNK 169
             +  KL   +++  +                ED+  VV      L      AIKMM ++
Sbjct: 152 SFSQEKLGYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMASQ 211

Query: 170 PRGGHIFNIDGAGSDGRPTPRMSP--------------------------DSLNICTRED 210
           PRGGHIFNIDGAGSDGRPTPR +                              N    + 
Sbjct: 212 PRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQPGMVTTDLLMSGANTKQAKF 271

[Close]

BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: gi|571520509|ref|XP_006598008.1| (PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Glycine max])

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 85/224 (37.95%), Postives = 106/224 (47.32%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLSG----TDSPNNH----DKHLW----------------- 109
           IGYA+AK+FLKAGDNV+ICS S     T   N      ++H+W                 
Sbjct: 91  IGYALAKEFLKAGDNVLICSRSDERVKTAVQNLRVEFGEQHVWGTKCDVKNAEDVKNLVS 150

Query: 110 LAPAKLFQFNLFFADGTKCDVR-------EGEDVKIVVNFVQKSLKYIDIWAIKMMLNKP 169
            A  K+   +++  +                ED+  VV      L      AIKMM+N+P
Sbjct: 151 FAQEKMKYIDIWINNAGSNAYSYKPLVEASDEDLIEVVTTNTLGLMICCREAIKMMVNQP 210

Query: 170 RGGHIFNIDGAGSDGRPTPRMSPDSLN----ICTREDFRP-------------------- 210
           RGGHIFNIDGAGSDGRPTPR +         +   +  +P                    
Sbjct: 211 RGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQPGMVTTDLLMSGVNTKQAKFF 270

[Close]

BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: gi|1021559267|ref|XP_016170914.1| (PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X5 [Arachis ipaensis])

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 85/224 (37.95%), Postives = 104/224 (46.43%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLS--------GTDSPNNHDKHLW----------------- 109
           IGYA+AK+FLKAGDNV+ICS S         +      ++H+W                 
Sbjct: 115 IGYALAKEFLKAGDNVIICSRSYERVETAVKSLKVEFGEQHVWGSKCDVRNAEDVKNLVS 174

Query: 110 LAPAKLFQFNLFFADGTK-------CDVREGEDVKIVVNFVQKSLKYIDIWAIKMMLNKP 169
            +  KL   +++  +                ED+  VV      L      AIKMM ++P
Sbjct: 175 FSQEKLGYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMASQP 234

Query: 170 RGGHIFNIDGAGSDGRPTPRMSP--------------------------DSLNICTREDF 210
           RGGHIFNIDGAGSDGRPTPR +                              N    + F
Sbjct: 235 RGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQPGMVTTDLLMSGANTKQAKFF 294

[Close]

BLAST of Cp4.1LG01g25160 vs. NCBI nr
Match: gi|1012225710|ref|XP_015936968.1| (PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X5 [Arachis duranensis])

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 85/224 (37.95%), Postives = 104/224 (46.43%), Query Frame = 1


Query: 50  IGYAVAKQFLKAGDNVVICSLS--------GTDSPNNHDKHLW----------------- 109
           IGYA+AK+FLKAGDNV+ICS S         +      ++H+W                 
Sbjct: 92  IGYALAKEFLKAGDNVIICSRSYERVETAVKSLKVEFGEQHVWGSKCDVRNAEDVKNLVS 151

Query: 110 LAPAKLFQFNLFFADGTK-------CDVREGEDVKIVVNFVQKSLKYIDIWAIKMMLNKP 169
            +  KL   +++  +                ED+  VV      L      AIKMM ++P
Sbjct: 152 FSQEKLGYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMASQP 211

Query: 170 RGGHIFNIDGAGSDGRPTPRMSP--------------------------DSLNICTREDF 210
           RGGHIFNIDGAGSDGRPTPR +                              N    + F
Sbjct: 212 RGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQPGMVTTDLLMSGANTKQAKFF 271

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g25160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NOL_ARATH	2.1e-12	46.51	Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana GN=NOL P...	[more]
NOL_ORYSJ	2.7e-12	47.13	Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa subsp. japonica ...	[more]
NYC1_ORYSJ	8.6e-06	37.89	Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp....	[more]

BLAST of Cp4.1LG01g25160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D3FLY5_9ORYZ	2.0e-33	44.83	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]
A0A0S3S9U4_PHAAN	1.2e-14	36.15	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G065500 PE=...	[more]
A0A0L9V3V1_PHAAN	1.2e-14	36.15	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g048300 PE=3 SV=1	[more]
A0A118JXU2_CYNCS	1.3e-13	44.26	Glucose/ribitol dehydrogenase (Fragment) OS=Cynara cardunculus var. scolymus GN=...	[more]
A0A151S9Y2_CAJCA	8.6e-13	38.93	NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG OS=Cajanus cajan GN=...	[more]

BLAST of Cp4.1LG01g25160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04900.1	1.2e-13	46.51	NYC1-like	[more]

BLAST of Cp4.1LG01g25160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1021559265\|ref\|XP_016170913.1\|	2.4e-24	37.78	PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X4 [Arachis i...	[more]
gi\|1012225706\|ref\|XP_015936966.1\|	2.4e-24	37.78	PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X4 [Arachis d...	[more]
gi\|571520509\|ref\|XP_006598008.1\|	4.1e-24	37.95	PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Glycine m...	[more]
gi\|1021559267\|ref\|XP_016170914.1\|	1.6e-23	37.95	PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X5 [Arachis i...	[more]
gi\|1012225710\|ref\|XP_015936968.1\|	1.6e-23	37.95	PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X5 [Arachis d...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016040	NAD(P)-bd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0010304	PSII associated light-harvesting complex II catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0034256	chlorophyll(ide) b reductase activity
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g25160.1	Cp4.1LG01g25160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 49..128 score: 5.
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 101..145 score: 1.43E-5coord: 50..74 score: 1.4
None	No IPR available	PANTHER	PTHR24314	FAMILY NOT NAMED	coord: 50..221 score: 1.9
None	No IPR available	PANTHER	PTHR24314:SF6	CHLOROPHYLL(IDE) B REDUCTASE NOL, CHLOROPLASTIC	coord: 50..221 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g25160	Cucsa.364450	Cucumber (Gy14) v1	cgycpeB0961
Cp4.1LG01g25160	CmaCh15G005370	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g25160	CmoCh15G005450	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g25160	Cla013674	Watermelon (97103) v1	cpewmB395
Cp4.1LG01g25160	Csa6G046390	Cucumber (Chinese Long) v2	cpecuB459
Cp4.1LG01g25160	MELO3C019918	Melon (DHL92) v3.5.1	cpemeB396
Cp4.1LG01g25160	ClCG08G008480	Watermelon (Charleston Gray)	cpewcgB417
Cp4.1LG01g25160	CSPI06G04160	Wild cucumber (PI 183967)	cpecpiB460
Cp4.1LG01g25160	Lsi08G006270	Bottle gourd (USVL1VR-Ls)	cpelsiB382
Cp4.1LG01g25160	MELO3C019918.2	Melon (DHL92) v3.6.1	cpemedB460
Cp4.1LG01g25160	CsaV3_6G004470	Cucumber (Chinese Long) v3	cpecucB0568
Cp4.1LG01g25160	Bhi04G001300	Wax gourd	cpewgoB0526
Cp4.1LG01g25160	CsGy6G004130	Cucumber (Gy14) v2	cgybcpeB797
Cp4.1LG01g25160	Carg01662	Silver-seed gourd	carcpeB1158

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g25160	Cp4.1LG13g10700	Cucurbita pepo (Zucchini)	cpecpeB199

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g25160	Cucumber (Gy14) v2	cgybcpeB635
Cp4.1LG01g25160	Silver-seed gourd	carcpeB0096
Cp4.1LG01g25160	Silver-seed gourd	carcpeB1176
Cp4.1LG01g25160	Wax gourd	cpewgoB0560
Cp4.1LG01g25160	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g25160	Cucurbita moschata (Rifu)	cmocpeB673