Cp4.1LG01g19550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g19550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	TCP family transcription factor
Location	Cp4.1LG01 : 16621055 .. 16621852 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGTTCTGATGGCGTCGTCACCCACAACAATGGCGCCATAATTCCCCACTCTCAACAGAGCACTCAGACCACCACCAACAATGGCGCTCTGCCTCTCAAAAAACCCCCTGCTAAGGACCGCCACAGCAAGGTCGATGGCCGTGGCCGTCGTATTCGTATGCCCATCATTTGTGCTGCTCGTGTCTTTCAACTCACCCGCGAGTTGGGTCACAAATCCGACGGTCAGACCATTGAGTGGCTCCTCCGTCAAGCAGAGCCTTCCATTATTGCCGCTACCGGCACCGGCACTACTCCGGCTAGCTTCTCCACCATCTGCGCCTCCCTCCGTGGCACTCCTGCCGCTCTTTCCTCTTCAGCTTCTCTCGACCATAAACCCCTTTTGCCTCCTGCCCCTTTCATTCTCGGTAAGCGCGTTAGACCTGACGACGATGCAGGTCATAAAGACAACGACGGCAACGGTGGCGGCGGTGGCGGTAATGGTGGTGGGGGTGCCATTTCTGTCGGCCCTTCTGTTGGTTCTATTATGGGTTCAGCTGCTGCGGGTGGATACTGGGCGTTTCCAGCTAGGCCGGATTTCGGACAGGTATGGAGCTTCGCCGCTGCTGCAGCTCCGGAGATGGTGATTCAACCGACGGCGATTTCTCATCAGGCGTCGTTATTCGCTCAGCAGCAATCAATTGGAGAAGCCTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGTCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACAGGGAAGTTCCGGGCGGAGAGACAACGACCACCGTTGA

mRNA sequence

ATGTCTGCTTCTCTCGACCATAAACCCCTTTTGCCTCCTGCCCCTTTCATTCTCGGTAAGCGCGTTAGACCTGACGACGATGCAGGTCATAAAGACAACGACGGCAACGGTGGCGGCGGTGGCGGTAATGGTGGTGGGGGTGCCATTTCTGTCGGCCCTTCTGTTGGTTCTATTATGGGTTCAGCTGCTGCGGGTGGATACTGGGCGTTTCCAGCTAGGCCGGATTTCGGACAGGTATGGAGCTTCGCCGCTGCTGCAGCTCCGGAGATGGTGATTCAACCGACGGCGATTTCTCATCAGGCGTCGTTATTCGCTCAGCAGCAATCAATTGGAGAAGCCTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGTCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACAGGGAAGTTCCGGGCGGAGAGACAACGACCACCGTTGA

Coding sequence (CDS)

ATGTCTGCTTCTCTCGACCATAAACCCCTTTTGCCTCCTGCCCCTTTCATTCTCGGTAAGCGCGTTAGACCTGACGACGATGCAGGTCATAAAGACAACGACGGCAACGGTGGCGGCGGTGGCGGTAATGGTGGTGGGGGTGCCATTTCTGTCGGCCCTTCTGTTGGTTCTATTATGGGTTCAGCTGCTGCGGGTGGATACTGGGCGTTTCCAGCTAGGCCGGATTTCGGACAGGTATGGAGCTTCGCCGCTGCTGCAGCTCCGGAGATGGTGATTCAACCGACGGCGATTTCTCATCAGGCGTCGTTATTCGCTCAGCAGCAATCAATTGGAGAAGCCTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGTCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACAGGGAAGTTCCGGGCGGAGAGACAACGACCACCGTTGA

Protein sequence

MSASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMGSAAAGGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAISHQASLFAQQQSIGEASAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR

Homology

[Close]

BLAST of Cp4.1LG01g19550 vs. Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 78/155 (50.32%), Postives = 95/155 (61.29%), Query Frame = 1


Query: 3   ASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVG-SIMGS 62
           AS     L   +PF LGKRV   ++           G  G GGGG ++VG ++G S+MG 
Sbjct: 93  ASFSTASLSTSSPFTLGKRVVRAEE-----------GESGGGGGGGLTVGHTMGTSLMGG 152

Query: 63  AAAGGYWAFPARPDFGQVWSFAAAAAPEMVI----QPTAI-----SHQASLFAQQQSIGE 122
             +GG+WA PARPDFGQVWSFA  A PEMV     QP  +       Q +  A   ++GE
Sbjct: 153 GGSGGFWAVPARPDFGQVWSFATGAPPEMVFAQQQQPATLFVRHQQQQQASAAAAAAMGE 212

Query: 123 ASAAKVGNYLPG-HLNLLASLSGGQGSSGRRDNDH 147
           ASAA+VGNYLPG HLNLLASLSGG   SGRR++DH
Sbjct: 213 ASAARVGNYLPGHHLNLLASLSGGANGSGRREDDH 236

[Close]

BLAST of Cp4.1LG01g19550 vs. Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-24
Identity = 76/154 (49.35%), Postives = 88/154 (57.14%), Query Frame = 1


Query: 2   SASLDHKP---LLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSI 61
           S SLDHKP   L   +PFILGKRVR D+D+ +  N                SVG      
Sbjct: 116 STSLDHKPTSLLGGTSPFILGKRVRADEDSNNSHNHS--------------SVGKDE--- 175

Query: 62  MGSAAAGGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAISHQASLFAQQQ-----SIGEA 121
             +    G+WA PARPDFGQVWSF  A AP+ +       HQ  LF  QQ     ++GEA
Sbjct: 176 TFTTTPAGFWAVPARPDFGQVWSF--AGAPQEMFLQQQHHHQQPLFVHQQQQQQAAMGEA 235

Query: 122 SAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR 148
           SAA+VGNYLPGHLNLLASLSGG   S RR+ D R
Sbjct: 236 SAARVGNYLPGHLNLLASLSGGSPGSDRREEDPR 250

[Close]

BLAST of Cp4.1LG01g19550 vs. TrEMBL
Match: A0A0A0KMY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G352090 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.9e-53
Identity = 119/151 (78.81%), Postives = 125/151 (82.78%), Query Frame = 1


Query: 2   SASL-DHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMG 61
           +ASL DHKPLLPPAPFILGKRVR DDD  +KD+ G  G G        ISVGPS+GSIMG
Sbjct: 122 AASLSDHKPLLPPAPFILGKRVRTDDDGANKDDTGGAGAG--------ISVGPSIGSIMG 181

Query: 62  SAAAGGYWAFPARPDFGQVWSFA----AAAAPEMVIQPTAISHQASLFAQQQSIGEASAA 121
            A AGGYWA PAR DFGQVWSFA    AAAAPEMVIQPTA+SHQASLF QQQS+GEASAA
Sbjct: 182 PAVAGGYWAIPARSDFGQVWSFAAAAAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAA 241

Query: 122 KVGNYLPGHLNLLASLSGGQGSSGRRDNDHR 148
           KVGNYLPGHLNLLASLSGG GSSGRRDNDHR
Sbjct: 242 KVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 264

[Close]

BLAST of Cp4.1LG01g19550 vs. TrEMBL
Match: A0A061E220_THECC (TCP family transcription factor OS=Theobroma cacao GN=TCM_007700 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.6e-38
Identity = 94/156 (60.26%), Postives = 106/156 (67.95%), Query Frame = 1


Query: 2   SASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMGS 61
           S+SLDHKPLL P PFILGKRVR DDD   KD+ G             +S+GP VGSI+G 
Sbjct: 120 SSSLDHKPLLGPTPFILGKRVRADDDNAGKDDSG------------VVSLGPGVGSIVGP 179

Query: 62  AAAGGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAIS---------HQASLFA-QQQSIG 121
           A  GG+WA PARPDFGQVWSFA    PEMV+Q  A +           A+LF  QQQ++G
Sbjct: 180 AGTGGFWAVPARPDFGQVWSFAPPPPPEMVVQTAAAAAAAAAAQQPAAAALFVQQQQAMG 239

Query: 122 EASAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR 148
           EASAA+VGNYLPGHLNLLASLSG  G SGRRD D R
Sbjct: 240 EASAARVGNYLPGHLNLLASLSGAPGGSGRRDEDPR 263

[Close]

BLAST of Cp4.1LG01g19550 vs. TrEMBL
Match: B9HGF5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07480g PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-36
Identity = 94/149 (63.09%), Postives = 113/149 (75.84%), Query Frame = 1


Query: 4   SLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMG--- 63
           SL+HKPLL PAPFILGKR+RP++D       GNGGG   +G    + VGP++GS+MG   
Sbjct: 136 SLEHKPLLGPAPFILGKRMRPEED-------GNGGGKDDDG----VPVGPTIGSLMGPTA 195

Query: 64  SAAAGGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAISHQASLFAQQQ--SIGEASAAKV 123
           +A  GG+WA PARPDF   W FAAAA PEMV+QPTA+  Q+SLF  Q   ++GEASAA+V
Sbjct: 196 TAGPGGFWALPARPDF---WGFAAAAPPEMVVQPTAV-QQSSLFMHQHAAAMGEASAARV 255

Query: 124 GNYLPGHLNLLASLSGGQGSSGRRDNDHR 148
           GNYLPGHLNLLASLS G GSSGRR++DHR
Sbjct: 256 GNYLPGHLNLLASLSSGHGSSGRREDDHR 269

[Close]

BLAST of Cp4.1LG01g19550 vs. TrEMBL
Match: A0A0D2SKJ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G211900 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.3e-36
Identity = 91/149 (61.07%), Postives = 105/149 (70.47%), Query Frame = 1


Query: 2   SASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMGS 61
           S+SLDHKPLL P PFILGKRVR DDD   KD+ G             ++VGP VGSI+G 
Sbjct: 119 SSSLDHKPLLGPTPFILGKRVRSDDDNAGKDDSGG------------LTVGPGVGSIVGP 178

Query: 62  AAA--GGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAI--SHQASLFAQQQ-SIGEASAA 121
                GG+WA PARPDFGQ+WSFAA   P+MV+Q  A   +  A+LF QQQ ++GEASAA
Sbjct: 179 NGTHPGGFWALPARPDFGQLWSFAAPPPPDMVVQAAAQQPAAAAALFVQQQQAMGEASAA 238

Query: 122 KVGNYLPGHLNLLASLSGGQGSSGRRDND 146
           +VGNYLPGHLNLLASLSG  G SGRRD D
Sbjct: 239 RVGNYLPGHLNLLASLSGAPGGSGRRDED 255

[Close]

BLAST of Cp4.1LG01g19550 vs. TrEMBL
Match: A0A0L9U133_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g263000 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 93/155 (60.00%), Postives = 107/155 (69.03%), Query Frame = 1


Query: 2   SASLDHKP-LLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMG 61
           S++ DHKP LL P PFILGKR+R DDD    D               A+SVGPS   ++G
Sbjct: 117 SSASDHKPQLLAPTPFILGKRIRTDDDTSKDD---------------AVSVGPS---LVG 176

Query: 62  SAAAGGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAIS---HQASLFA-----QQQSIGE 121
            +   G WA PARPDFGQ+WSF  AAAPEMV+QP A+S     ASLFA     QQQ+IGE
Sbjct: 177 PSTPPGLWALPARPDFGQIWSF--AAAPEMVVQPAAVSVSQQHASLFAHHQRQQQQAIGE 236

Query: 122 ASAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR 148
           ASAA+VGNYLPGHLNLLASLSGG G+SGRRD +HR
Sbjct: 237 ASAARVGNYLPGHLNLLASLSGGPGNSGRRDGEHR 251

[Close]

BLAST of Cp4.1LG01g19550 vs. TAIR10
Match: AT5G08330.1 (AT5G08330.1 TCP family transcription factor )

HSP 1 Score: 117.5 bits (293), Expect = 7.1e-27
Identity = 78/155 (50.32%), Postives = 95/155 (61.29%), Query Frame = 1


Query: 3   ASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVG-SIMGS 62
           AS     L   +PF LGKRV   ++           G  G GGGG ++VG ++G S+MG 
Sbjct: 93  ASFSTASLSTSSPFTLGKRVVRAEE-----------GESGGGGGGGLTVGHTMGTSLMGG 152

Query: 63  AAAGGYWAFPARPDFGQVWSFAAAAAPEMVI----QPTAI-----SHQASLFAQQQSIGE 122
             +GG+WA PARPDFGQVWSFA  A PEMV     QP  +       Q +  A   ++GE
Sbjct: 153 GGSGGFWAVPARPDFGQVWSFATGAPPEMVFAQQQQPATLFVRHQQQQQASAAAAAAMGE 212

Query: 123 ASAAKVGNYLPG-HLNLLASLSGGQGSSGRRDNDH 147
           ASAA+VGNYLPG HLNLLASLSGG   SGRR++DH
Sbjct: 213 ASAARVGNYLPGHHLNLLASLSGGANGSGRREDDH 236

[Close]

BLAST of Cp4.1LG01g19550 vs. TAIR10
Match: AT5G23280.1 (AT5G23280.1 TCP family transcription factor )

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 76/154 (49.35%), Postives = 88/154 (57.14%), Query Frame = 1


Query: 2   SASLDHKP---LLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSI 61
           S SLDHKP   L   +PFILGKRVR D+D+ +  N                SVG      
Sbjct: 116 STSLDHKPTSLLGGTSPFILGKRVRADEDSNNSHNHS--------------SVGKDE--- 175

Query: 62  MGSAAAGGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAISHQASLFAQQQ-----SIGEA 121
             +    G+WA PARPDFGQVWSF  A AP+ +       HQ  LF  QQ     ++GEA
Sbjct: 176 TFTTTPAGFWAVPARPDFGQVWSF--AGAPQEMFLQQQHHHQQPLFVHQQQQQQAAMGEA 235

Query: 122 SAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR 148
           SAA+VGNYLPGHLNLLASLSGG   S RR+ D R
Sbjct: 236 SAARVGNYLPGHLNLLASLSGGSPGSDRREEDPR 250

[Close]

BLAST of Cp4.1LG01g19550 vs. NCBI nr
Match: gi|449464308|ref|XP_004149871.1| (PREDICTED: transcription factor TCP21 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 7.1e-53
Identity = 119/151 (78.81%), Postives = 125/151 (82.78%), Query Frame = 1


Query: 2   SASL-DHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMG 61
           +ASL DHKPLLPPAPFILGKRVR DDD  +KD+ G  G G        ISVGPS+GSIMG
Sbjct: 122 AASLSDHKPLLPPAPFILGKRVRTDDDGANKDDTGGAGAG--------ISVGPSIGSIMG 181

Query: 62  SAAAGGYWAFPARPDFGQVWSFA----AAAAPEMVIQPTAISHQASLFAQQQSIGEASAA 121
            A AGGYWA PAR DFGQVWSFA    AAAAPEMVIQPTA+SHQASLF QQQS+GEASAA
Sbjct: 182 PAVAGGYWAIPARSDFGQVWSFAAAAAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAA 241

Query: 122 KVGNYLPGHLNLLASLSGGQGSSGRRDNDHR 148
           KVGNYLPGHLNLLASLSGG GSSGRRDNDHR
Sbjct: 242 KVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 264

[Close]

BLAST of Cp4.1LG01g19550 vs. NCBI nr
Match: gi|659126867|ref|XP_008463404.1| (PREDICTED: transcription factor TCP21-like [Cucumis melo])

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 116/146 (79.45%), Postives = 121/146 (82.88%), Query Frame = 1


Query: 6   DHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMGSAAAG 65
           DHKPLLPPAPFILGKRVR DDD  +KD+ G  G G        ISVGPS+GSIMG A AG
Sbjct: 128 DHKPLLPPAPFILGKRVRTDDDVANKDDTGGAGAG--------ISVGPSIGSIMGPAVAG 187

Query: 66  GYWAFPARPDFGQVWSFA----AAAAPEMVIQPTAISHQASLFAQQQSIGEASAAKVGNY 125
           GYWA PAR DFGQVWSFA    AAAAPEMVIQPTA+SHQASLF QQQS+GEASAAKVGNY
Sbjct: 188 GYWAIPARSDFGQVWSFAAAAAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNY 247

Query: 126 LPGHLNLLASLSGGQGSSGRRDNDHR 148
           LPGHLNLLASLSGG GSSGRRDNDHR
Sbjct: 248 LPGHLNLLASLSGGPGSSGRRDNDHR 265

[Close]

BLAST of Cp4.1LG01g19550 vs. NCBI nr
Match: gi|659126302|ref|XP_008463113.1| (PREDICTED: transcription factor TCP21-like [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 3.5e-52
Identity = 115/143 (80.42%), Postives = 121/143 (84.62%), Query Frame = 1


Query: 6   DHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMGSAAAG 65
           DHKPLLPPAPFILGKRVR DDD  +KD+ G  G G        ISVGPS+GSIMG A AG
Sbjct: 127 DHKPLLPPAPFILGKRVRTDDDEANKDDTGGDGPG--------ISVGPSIGSIMGPAVAG 186

Query: 66  GYWAFPARPDFGQVWSFA-AAAAPEMVIQPTAISHQASLFAQQQSIGEASAAKVGNYLPG 125
           GYWA PAR DFGQ+WSFA AAAAPEMVIQPTA+SHQASLF QQQS+GEASAAKVGNYLPG
Sbjct: 187 GYWAIPARSDFGQLWSFAAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPG 246

Query: 126 HLNLLASLSGGQGSSGRRDNDHR 148
           HLNLLASLSGG GSSGRRDNDHR
Sbjct: 247 HLNLLASLSGGPGSSGRRDNDHR 261

[Close]

BLAST of Cp4.1LG01g19550 vs. NCBI nr
Match: gi|1021569620|ref|XP_016176021.1| (PREDICTED: transcription factor TCP7-like [Arachis ipaensis])

HSP 1 Score: 167.5 bits (423), Expect = 1.7e-38
Identity = 94/157 (59.87%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 2   SASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMGS 61
           ++SLDHKPLL P PFILGKR+R DDDA  KD+               +SVGP+VGS++G 
Sbjct: 124 ASSLDHKPLLAPTPFILGKRIRTDDDASAKDD--------------GVSVGPAVGSLVGP 183

Query: 62  AAAGGYWAFPARPDFGQVWSFAAAAAP-EMVIQPTAIS----HQASLFA------QQQSI 121
            A  G WA PARPDFGQ+WSFA AA P EMV+Q  A+S     QASLF       QQQ++
Sbjct: 184 GAPAGLWALPARPDFGQIWSFATAAPPPEMVVQSAAVSVSQQQQASLFVHHQHQQQQQAM 243

Query: 122 GEASAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR 148
           GEASAA++GNYLPGHLNLLASLSGG G+SGRRD++ R
Sbjct: 244 GEASAARLGNYLPGHLNLLASLSGGPGNSGRRDDEPR 266

[Close]

BLAST of Cp4.1LG01g19550 vs. NCBI nr
Match: gi|1009183037|ref|XP_015873038.1| (PREDICTED: transcription factor TCP7-like [Ziziphus jujuba])

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-38
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 1


Query: 2   SASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGNGGGGGGNGGGGAISVGPSVGSIMGS 61
           SASLDHKPLL P PFILGKRVRPDD    KD DG        G GG   VGP++GS++G 
Sbjct: 134 SASLDHKPLLGPTPFILGKRVRPDDGVA-KDGDG--------GDGGVSVVGPTMGSMVGP 193

Query: 62  AAA--GGYWAFPARPDFGQVWSFAAAAAPEMVIQPTAISHQA-SLFAQQQSIGEASAAKV 121
           A    GG+WA    P FGQVWSFAAAA P+MV QP A+S Q  SLF QQQ+IGEASAA+V
Sbjct: 194 ATTTPGGFWA----PHFGQVWSFAAAAHPDMVGQPAAVSQQPPSLFVQQQAIGEASAARV 253

Query: 122 GNYLPGHLNLLASLSGGQGSSGRRDNDHR 148
           GNYLPGHLNLLASLSGG GSSGRRD+D R
Sbjct: 254 GNYLPGHLNLLASLSGGPGSSGRRDDDPR 269

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g19550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCP21_ARATH	1.3e-25	50.32	Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1	[more]
TCP7_ARATH	2.4e-24	49.35	Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g19550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMY3_CUCSA	4.9e-53	78.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G352090 PE=4 SV=1	[more]
A0A061E220_THECC	7.6e-38	60.26	TCP family transcription factor OS=Theobroma cacao GN=TCM_007700 PE=4 SV=1	[more]
B9HGF5_POPTR	3.2e-36	63.09	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07480g PE=4 SV=1	[more]
A0A0D2SKJ2_GOSRA	9.3e-36	61.07	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G211900 PE=4 SV=1	[more]
A0A0L9U133_PHAAN	1.6e-35	60.00	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g263000 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g19550 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08330.1	7.1e-27	50.32	TCP family transcription factor	[more]
AT5G23280.1	1.3e-25	49.35	TCP family transcription factor	[more]

BLAST of Cp4.1LG01g19550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464308\|ref\|XP_004149871.1\|	7.1e-53	78.81	PREDICTED: transcription factor TCP21 [Cucumis sativus]	[more]
gi\|659126867\|ref\|XP_008463404.1\|	1.2e-52	79.45	PREDICTED: transcription factor TCP21-like [Cucumis melo]	[more]
gi\|659126302\|ref\|XP_008463113.1\|	3.5e-52	80.42	PREDICTED: transcription factor TCP21-like [Cucumis melo]	[more]
gi\|1021569620\|ref\|XP_016176021.1\|	1.7e-38	59.87	PREDICTED: transcription factor TCP7-like [Arachis ipaensis]	[more]
gi\|1009183037\|ref\|XP_015873038.1\|	2.2e-38	67.79	PREDICTED: transcription factor TCP7-like [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0043433	negative regulation of sequence-specific DNA binding transcription factor activity
biological_process	GO:0042752	regulation of circadian rhythm
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g19550.1	Cp4.1LG01g19550.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g19550	Cucsa.014000	Cucumber (Gy14) v1	cgycpeB0578
Cp4.1LG01g19550	CmaCh15G007880	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g19550	CmaCh04G022460	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g19550	CmoCh15G008160	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g19550	CmoCh04G023470	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g19550	Csa5G352090	Cucumber (Chinese Long) v2	cpecuB454
Cp4.1LG01g19550	MELO3C025049	Melon (DHL92) v3.5.1	cpemeB359
Cp4.1LG01g19550	CSPI05G13820	Wild cucumber (PI 183967)	cpecpiB443
Cp4.1LG01g19550	Lsi09G008630	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g19550	MELO3C011754.2	Melon (DHL92) v3.6.1	cpemedB435
Cp4.1LG01g19550	MELO3C025049.2	Melon (DHL92) v3.6.1	cpemedB419
Cp4.1LG01g19550	CsaV3_5G020710	Cucumber (Chinese Long) v3	cpecucB0549
Cp4.1LG01g19550	Bhi07G000917	Wax gourd	cpewgoB0567
Cp4.1LG01g19550	Bhi12G001015	Wax gourd	cpewgoB0490
Cp4.1LG01g19550	CsGy5G013670	Cucumber (Gy14) v2	cgybcpeB653
Cp4.1LG01g19550	Carg17778	Silver-seed gourd	carcpeB0670
Cp4.1LG01g19550	Carg01417	Silver-seed gourd	carcpeB1158

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g19550	Cp4.1LG01g10190	Cucurbita pepo (Zucchini)	cpecpeB380

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g19550	Watermelon (Charleston Gray)	cpewcgB370
Cp4.1LG01g19550	Watermelon (97103) v1	cpewmB441
Cp4.1LG01g19550	Wax gourd	cpewgoB0491
Cp4.1LG01g19550	Cucurbita pepo (Zucchini)	cpecpeB199