Cp4.1LG01g18760 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGTATTACATTATGCTGACGTGGAAAATCCCTCAAGGCCTATGTGTCCAGAAACTTCCCACGTGGCACAAATTCAGTGTATGACTTAACCATCGTCGTTACGGAAAAGGTACATACGCATAGCATTCTGATCCTCCTCCCCTGCCTTCGGACTTTTATCTCCGATGGCCATTACCGGCTCTACTGACTGGTCACCGCCTCCATTGAGCTCTTTCAGGTAATCCTATCATCTCAGCCACTAATCTCGCTCTCTTTTTCTCGATCTTCGATCTCTTCATCTAAATTCCTCCGGTAGCCTTTCCCCGATCCCCGAACAATCCCCCATTGCCCTAACCGAGATCGGTTTGGACTCTTCTTCAAGCTTTTGAACTCCCTGAAGGATTAGATCTACGAGTATTACGTGAAATCGGCATTGAGGCATCTAATCAGGTACTTAGTGCGATTGAAGAATTGGGATTTTATTTTGTTAGTTTCTTGAGATTTTGATGATTATGGTGTTTGCACTGATATTGATACTTGTTCTAGATTGGTTAGTAGTTGAGAGTAAGATTGTGAATTTTACGCCCTTTTCGGCAAAAATTGATGGGATTCTTTGCTAATCATTAGTGAAATTAGGGCGAGTGTTCGAGTCGCTTGAGTTCTTAGAGATATGAGGAAGAAAGGGATTGAAGAGGATTTGATATGCAGTTTTGCAAGCATTTAGGAAGTTCAACTGGCTGAAGATCTTTACAATGAGGCAAAAGCCAAGAAGTTTTTGAGAGATCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTGGAACTGATGAAGGGCTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGGAATTGTCAATGGCTACGCCCTGAGAAGGGGTTAGGGTTTACGAGAAGCTGATCGGGTGGGAGGTCGGACAAGTGAAAGCCCAAAGAGAATAATATTTGCTAACTGTGATTTTGTATGGTATAAATGGTAGAGCTAGATACCGAGTGGTATGGCAAATGAGAACGTTGGGTTCCCAAGGGGCAAATGGGTGGATTGTGAGATTCCACGTTGGTTGAAGGGGAGAACGAAACATTTCTTATAAGGATGTGGAAACATTTTTTAGCAGACGTGTTAAAACAAGGGGAAACTCAAAAGGGAAAGTCCAAAAGGGACAATATCTGCAAACAACAGGTGGTGTGCCAGAGAGAACGTTGGCTCTCATGGGAATGGATCACGTAGGCTTAGCTGTTACACCTCAGCGATCAACCACGTAGGCTTAGCTGTTACACCTCAGCGATCAACGCCTACTGCCATGTCGGGCTGTACTCAAAAGCAGAAATGGAGGAGAAGGGGTTTGACAAAAGTGTAGTTTGCATACTCTAGCTTGATATCAATGTATGGGAAGACAGGAGGTTAAAACATACAATGAAGCTGAGAGTGTCAAAGAATAGCTCAAGTGAGCCAAAACGAAGCATGAAAGACACCATTATATGAATAACATTACATTAATCCAAACCATAACCAAAGCAAATGAAACAACGCCCTTACACAACACAACAATACCCAAAAGATGGCCACTTTTATTCTATAATATCACGCCCATAAAGGTCTCATCAGTGTCCACTTCAACTGATAGACAACTGATTTGAATCAACAAAGACCACTCAAACGCAGTGCTTTGTGCAGAAGCAGCGGCGGCGGAAGCCTCTGCAATGCCCACCATGGAAGCCCTCTGTTTTGCAGACATGGCCGCAGTTGTTCTTACTGAAGCACAACCCCCTGAAGTGGTGGCTCGGAGACTCGCATGTCCTTGCCTCTGTAGCCATTGGCGCCATCCCTGGACCAAATCAACCATTTTAATCATCTAA ATGGCCGTAATCCTATCATCTCAGCCACTAATCTCGCTCTCTTTTTCTCGATCTTCGATCTCTTCATCTAAATTCCTCCGCCTTTCCCCGATCCCCGAACAATCCCCCATTGCCCTAACCGAGATCGCTTTTGAACTCCCTGAAGGATTAGATCTACGAGTATTACGTGAAATCGGCATTGAGGCATCTAATCAGGAAGTTCAACTGGCTGAAGATCTTTACAATGAGGCAAAAGCCAAGAAGTTTTTGAGAGATCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTGGAACTGATGAAGGGCTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGGAATTCTTGATATCAATGTATGGGAAGACAGGAGGTTAAAACATACAATGAAGCTGAGAGTGTCAAAGAATAGCTCAAAAGCAGCGGCGGCGGAAGCCTCTGCAATGCCCACCATGGAAGCCCTCTGTTTTGCAGACATGGCCGCAGTTGTTCTTACTGAAGCACAACCCCCTGAAGTGGTGGCTCGGAGACTCGCATGTCCTTGCCTCTGTAGCCATTGGCGCCATCCCTGGACCAAATCAACCATTTTAATCATCTAA ATGGCCGTAATCCTATCATCTCAGCCACTAATCTCGCTCTCTTTTTCTCGATCTTCGATCTCTTCATCTAAATTCCTCCGCCTTTCCCCGATCCCCGAACAATCCCCCATTGCCCTAACCGAGATCGCTTTTGAACTCCCTGAAGGATTAGATCTACGAGTATTACGTGAAATCGGCATTGAGGCATCTAATCAGGAAGTTCAACTGGCTGAAGATCTTTACAATGAGGCAAAAGCCAAGAAGTTTTTGAGAGATCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTGGAACTGATGAAGGGCTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGGAATTCTTGATATCAATGTATGGGAAGACAGGAGGTTAAAACATACAATGAAGCTGAGAGTGTCAAAGAATAGCTCAAAAGCAGCGGCGGCGGAAGCCTCTGCAATGCCCACCATGGAAGCCCTCTGTTTTGCAGACATGGCCGCAGTTGTTCTTACTGAAGCACAACCCCCTGAAGTGGTGGCTCGGAGACTCGCATGTCCTTGCCTCTGTAGCCATTGGCGCCATCCCTGGACCAAATCAACCATTTTAATCATCTAA MAVILSSQPLISLSFSRSSISSSKFLRLSPIPEQSPIALTEIAFELPEGLDLRVLREIGIEASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSDCIFCGILDINVWEDRRLKHTMKLRVSKNSSKAAAAEASAMPTMEALCFADMAAVVLTEAQPPEVVARRLACPCLCSHWRHPWTKSTILII
BLAST of Cp4.1LG01g18760 vs. Swiss-Prot
Match: PP379_ARATH (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.6e-10 Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: A0A0A0KPV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G114580 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 9.0e-24 Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: F6H9R2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g01100 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 6.5e-14 Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: F6HG21_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01900 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13 Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: M1D3N4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031369 PE=4 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13 Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: M1D3N3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031369 PE=4 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13 Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. TAIR10
Match: AT5G13770.1 (AT5G13770.1 Pentatricopeptide repeat (PPR-like) superfamily protein) HSP 1 Score: 67.8 bits (164), Expect = 9.2e-12 Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|449466949|ref|XP_004151188.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucumis sativus]) HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23 Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|659131093|ref|XP_008465506.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucumis melo]) HSP 1 Score: 117.5 bits (293), Expect = 2.9e-23 Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|297736068|emb|CBI24106.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 85.9 bits (211), Expect = 9.3e-14 Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|359484961|ref|XP_002273494.2| (PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Vitis vinifera]) HSP 1 Score: 85.9 bits (211), Expect = 9.3e-14 Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|297738294|emb|CBI27495.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13 Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
|