Cp4.1LG01g18760 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g18760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG01 : 16098179 .. 16100074 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTATTACATTATGCTGACGTGGAAAATCCCTCAAGGCCTATGTGTCCAGAAACTTCCCACGTGGCACAAATTCAGTGTATGACTTAACCATCGTCGTTACGGAAAAGGTACATACGCATAGCATTCTGATCCTCCTCCCCTGCCTTCGGACTTTTATCTCCGATGGCCATTACCGGCTCTACTGACTGGTCACCGCCTCCATTGAGCTCTTTCAGGTAATCCTATCATCTCAGCCACTAATCTCGCTCTCTTTTTCTCGATCTTCGATCTCTTCATCTAAATTCCTCCGGTAGCCTTTCCCCGATCCCCGAACAATCCCCCATTGCCCTAACCGAGATCGGTTTGGACTCTTCTTCAAGCTTTTGAACTCCCTGAAGGATTAGATCTACGAGTATTACGTGAAATCGGCATTGAGGCATCTAATCAGGTACTTAGTGCGATTGAAGAATTGGGATTTTATTTTGTTAGTTTCTTGAGATTTTGATGATTATGGTGTTTGCACTGATATTGATACTTGTTCTAGATTGGTTAGTAGTTGAGAGTAAGATTGTGAATTTTACGCCCTTTTCGGCAAAAATTGATGGGATTCTTTGCTAATCATTAGTGAAATTAGGGCGAGTGTTCGAGTCGCTTGAGTTCTTAGAGATATGAGGAAGAAAGGGATTGAAGAGGATTTGATATGCAGTTTTGCAAGCATTTAGGAAGTTCAACTGGCTGAAGATCTTTACAATGAGGCAAAAGCCAAGAAGTTTTTGAGAGATCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTGGAACTGATGAAGGGCTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGGAATTGTCAATGGCTACGCCCTGAGAAGGGGTTAGGGTTTACGAGAAGCTGATCGGGTGGGAGGTCGGACAAGTGAAAGCCCAAAGAGAATAATATTTGCTAACTGTGATTTTGTATGGTATAAATGGTAGAGCTAGATACCGAGTGGTATGGCAAATGAGAACGTTGGGTTCCCAAGGGGCAAATGGGTGGATTGTGAGATTCCACGTTGGTTGAAGGGGAGAACGAAACATTTCTTATAAGGATGTGGAAACATTTTTTAGCAGACGTGTTAAAACAAGGGGAAACTCAAAAGGGAAAGTCCAAAAGGGACAATATCTGCAAACAACAGGTGGTGTGCCAGAGAGAACGTTGGCTCTCATGGGAATGGATCACGTAGGCTTAGCTGTTACACCTCAGCGATCAACCACGTAGGCTTAGCTGTTACACCTCAGCGATCAACGCCTACTGCCATGTCGGGCTGTACTCAAAAGCAGAAATGGAGGAGAAGGGGTTTGACAAAAGTGTAGTTTGCATACTCTAGCTTGATATCAATGTATGGGAAGACAGGAGGTTAAAACATACAATGAAGCTGAGAGTGTCAAAGAATAGCTCAAGTGAGCCAAAACGAAGCATGAAAGACACCATTATATGAATAACATTACATTAATCCAAACCATAACCAAAGCAAATGAAACAACGCCCTTACACAACACAACAATACCCAAAAGATGGCCACTTTTATTCTATAATATCACGCCCATAAAGGTCTCATCAGTGTCCACTTCAACTGATAGACAACTGATTTGAATCAACAAAGACCACTCAAACGCAGTGCTTTGTGCAGAAGCAGCGGCGGCGGAAGCCTCTGCAATGCCCACCATGGAAGCCCTCTGTTTTGCAGACATGGCCGCAGTTGTTCTTACTGAAGCACAACCCCCTGAAGTGGTGGCTCGGAGACTCGCATGTCCTTGCCTCTGTAGCCATTGGCGCCATCCCTGGACCAAATCAACCATTTTAATCATCTAA

mRNA sequence

ATGGCCGTAATCCTATCATCTCAGCCACTAATCTCGCTCTCTTTTTCTCGATCTTCGATCTCTTCATCTAAATTCCTCCGCCTTTCCCCGATCCCCGAACAATCCCCCATTGCCCTAACCGAGATCGCTTTTGAACTCCCTGAAGGATTAGATCTACGAGTATTACGTGAAATCGGCATTGAGGCATCTAATCAGGAAGTTCAACTGGCTGAAGATCTTTACAATGAGGCAAAAGCCAAGAAGTTTTTGAGAGATCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTGGAACTGATGAAGGGCTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGGAATTCTTGATATCAATGTATGGGAAGACAGGAGGTTAAAACATACAATGAAGCTGAGAGTGTCAAAGAATAGCTCAAAAGCAGCGGCGGCGGAAGCCTCTGCAATGCCCACCATGGAAGCCCTCTGTTTTGCAGACATGGCCGCAGTTGTTCTTACTGAAGCACAACCCCCTGAAGTGGTGGCTCGGAGACTCGCATGTCCTTGCCTCTGTAGCCATTGGCGCCATCCCTGGACCAAATCAACCATTTTAATCATCTAA

Coding sequence (CDS)

ATGGCCGTAATCCTATCATCTCAGCCACTAATCTCGCTCTCTTTTTCTCGATCTTCGATCTCTTCATCTAAATTCCTCCGCCTTTCCCCGATCCCCGAACAATCCCCCATTGCCCTAACCGAGATCGCTTTTGAACTCCCTGAAGGATTAGATCTACGAGTATTACGTGAAATCGGCATTGAGGCATCTAATCAGGAAGTTCAACTGGCTGAAGATCTTTACAATGAGGCAAAAGCCAAGAAGTTTTTGAGAGATCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTGGAACTGATGAAGGGCTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGGAATTCTTGATATCAATGTATGGGAAGACAGGAGGTTAAAACATACAATGAAGCTGAGAGTGTCAAAGAATAGCTCAAAAGCAGCGGCGGCGGAAGCCTCTGCAATGCCCACCATGGAAGCCCTCTGTTTTGCAGACATGGCCGCAGTTGTTCTTACTGAAGCACAACCCCCTGAAGTGGTGGCTCGGAGACTCGCATGTCCTTGCCTCTGTAGCCATTGGCGCCATCCCTGGACCAAATCAACCATTTTAATCATCTAA

Protein sequence

MAVILSSQPLISLSFSRSSISSSKFLRLSPIPEQSPIALTEIAFELPEGLDLRVLREIGIEASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSDCIFCGILDINVWEDRRLKHTMKLRVSKNSSKAAAAEASAMPTMEALCFADMAAVVLTEAQPPEVVARRLACPCLCSHWRHPWTKSTILII
BLAST of Cp4.1LG01g18760 vs. Swiss-Prot
Match: PP379_ARATH (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-10
Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           A  +EV + E L+ EA  KK L+DP M LK++LMY+++G++E  LE+V  M+  ++ V+D
Sbjct: 294 AEAREVVITEKLFKEAGGKKLLKDPEMCLKVVLMYVREGNMETTLEVVAAMRKAELKVTD 353

Query: 122 CIFCGILD 130
           CI C I++
Sbjct: 354 CILCAIVN 361

BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: A0A0A0KPV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G114580 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.0e-24
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS QEV+LAEDLYNEAKAKK LRDPAMFLKLILMY+QQGSLEKALEIVE+MK FKIGVSD
Sbjct: 306 ASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSD 365

Query: 122 CIFCGILDINVWEDRR 138
           CIFC I  +N +  RR
Sbjct: 366 CIFCAI--VNGYATRR 379

BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: F6H9R2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g01100 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.5e-14
Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV++AE+L+ EA+ KK LRDP +FLKL+LMY+++G +E+ +EIV+ MK  KI VSD
Sbjct: 274 ASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTIEIVKAMKNVKIRVSD 333

Query: 122 CIFCGILD 130
           CIFC I++
Sbjct: 334 CIFCAIVN 341

BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: F6HG21_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01900 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV++AE+L+ EA+ KK LRDP +FLKL+LMY+++G +E+ LEIV+ MK  +I VSD
Sbjct: 94  ASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTLEIVKAMKNVEIRVSD 153

Query: 122 CIFCGILD 130
           CIFC I++
Sbjct: 154 CIFCAIVN 161

BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: M1D3N4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031369 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV++AE+L  EA+ KK LRDPA+FLKL+LMYI++G +EK L++V  M   KI VSD
Sbjct: 330 ASIREVKMAEELLEEAEGKKMLRDPALFLKLVLMYIEEGCMEKTLDVVATMTRVKIRVSD 389

Query: 122 CIFCGILD 130
           CIFC I++
Sbjct: 390 CIFCAIVN 397

BLAST of Cp4.1LG01g18760 vs. TrEMBL
Match: M1D3N3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031369 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV++AE+L  EA+ KK LRDPA+FLKL+LMYI++G +EK L++V  M   KI VSD
Sbjct: 73  ASIREVKMAEELLEEAEGKKMLRDPALFLKLVLMYIEEGCMEKTLDVVATMTRVKIRVSD 132

Query: 122 CIFCGILD 130
           CIFC I++
Sbjct: 133 CIFCAIVN 140

BLAST of Cp4.1LG01g18760 vs. TAIR10
Match: AT5G13770.1 (AT5G13770.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 9.2e-12
Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           A  +EV + E L+ EA  KK L+DP M LK++LMY+++G++E  LE+V  M+  ++ V+D
Sbjct: 294 AEAREVVITEKLFKEAGGKKLLKDPEMCLKVVLMYVREGNMETTLEVVAAMRKAELKVTD 353

Query: 122 CIFCGILD 130
           CI C I++
Sbjct: 354 CILCAIVN 361

BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|449466949|ref|XP_004151188.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS QEV+LAEDLYNEAKAKK LRDPAMFLKLILMY+QQGSLEKALEIVE+MK FKIGVSD
Sbjct: 306 ASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSD 365

Query: 122 CIFCGILDINVWEDRR 138
           CIFC I  +N +  RR
Sbjct: 366 CIFCAI--VNGYATRR 379

BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|659131093|ref|XP_008465506.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 2.9e-23
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV+LAEDLYNEAKAKK LRDPAMFLKLILMYIQQGSLEKALEIVE+MK FKIGVSD
Sbjct: 306 ASIREVKLAEDLYNEAKAKKLLRDPAMFLKLILMYIQQGSLEKALEIVEVMKDFKIGVSD 365

Query: 122 CIFCGILDINVWEDRR 138
           CIFC I  +N +  RR
Sbjct: 366 CIFCAI--VNGYATRR 379

BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|297736068|emb|CBI24106.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 85.9 bits (211), Expect = 9.3e-14
Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV++AE+L+ EA+ KK LRDP +FLKL+LMY+++G +E+ +EIV+ MK  KI VSD
Sbjct: 229 ASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTIEIVKAMKNVKIRVSD 288

Query: 122 CIFCGILD 130
           CIFC I++
Sbjct: 289 CIFCAIVN 296

BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|359484961|ref|XP_002273494.2| (PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 85.9 bits (211), Expect = 9.3e-14
Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV++AE+L+ EA+ KK LRDP +FLKL+LMY+++G +E+ +EIV+ MK  KI VSD
Sbjct: 306 ASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTIEIVKAMKNVKIRVSD 365

Query: 122 CIFCGILD 130
           CIFC I++
Sbjct: 366 CIFCAIVN 373

BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: gi|297738294|emb|CBI27495.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV++AE+L+ EA+ KK LRDP +FLKL+LMY+++G +E+ LEIV+ MK  +I VSD
Sbjct: 243 ASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTLEIVKAMKNVEIRVSD 302

Query: 122 CIFCGILD 130
           CIFC I++
Sbjct: 303 CIFCAIVN 310

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP379_ARATH1.6e-1044.12Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A0A0KPV8_CUCSA9.0e-2481.58Uncharacterized protein OS=Cucumis sativus GN=Csa_5G114580 PE=4 SV=1[more]
F6H9R2_VITVI6.5e-1457.35Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g01100 PE=4 SV=... [more]
F6HG21_VITVI1.1e-1357.35Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01900 PE=4 SV=... [more]
M1D3N4_SOLTU1.4e-1358.82Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031369 PE=4 SV=1[more]
M1D3N3_SOLTU1.4e-1358.82Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031369 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G13770.19.2e-1244.12 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449466949|ref|XP_004151188.1|1.3e-2381.58PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic ... [more]
gi|659131093|ref|XP_008465506.1|2.9e-2381.58PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic ... [more]
gi|297736068|emb|CBI24106.3|9.3e-1457.35unnamed protein product [Vitis vinifera][more]
gi|359484961|ref|XP_002273494.2|9.3e-1457.35PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-... [more]
gi|297738294|emb|CBI27495.3|1.6e-1357.35unnamed protein product [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g18760.1Cp4.1LG01g18760.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 60..80
scor
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 57..127
score: 4.1
NoneNo IPR availablePANTHERPTHR24015:SF785SUBFAMILY NOT NAMEDcoord: 57..127
score: 4.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g18760CsaV3_5G017380Cucumber (Chinese Long) v3cpecucB0522
Cp4.1LG01g18760Bhi12G000883Wax gourdcpewgoB0491
Cp4.1LG01g18760CsGy5G012250Cucumber (Gy14) v2cgybcpeB630
Cp4.1LG01g18760Carg01339Silver-seed gourdcarcpeB1158
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g18760Cp4.1LG13g06330Cucurbita pepo (Zucchini)cpecpeB199