Carg01339 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01339
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At5g13770, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_004 : 345872 .. 347701 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTCACTGGCTCTCCCGACTGGTCACTCCCCTCATCAACCTGTTTCAGAAAATCCCGTCTCCTTACTTTCATCCCCGCCTCCAATCTCGCTCTCCTTTTCTCTCTTCCAAATCTTCGATCTCTTCACCTAAATTCTTCCGGGTGCCCGTCACCAATCCTAGAATCATCGCCCACTTCCCTCCCCGAGATCGATTCGGACTCTAATCTTCAGGATTTTCAACTTCCCTCGTCGTCCAGTGTAGAAGATTTGAACGATTTCTTATGTGGATTACCCCAAAACCCCGGACGGGAGGATTTGATCTATGAGTACTACGTGAAAGCGAAGGAAACGCCAGGGTTTAGACCTGAGAAATCAACATTGAGGCATCTAATCAGGTACTTAGTGCGATCGAAGAACTGGAATTTGATTTTTTTAGTTTCTAGAGATTTTGTGGATTATGATGTTTGCCCTGATAGAGATACTTGTTCTAGATTGGTTAGTAGTTGCGTTAGAGGTAGAAAATTTAAAGTTGTTAGGGCTCTGCTTGAGGTTTTTGAACGGGATAGGGATGTTGCTACGGCTGCATTTGAAGCTGCCATGAGAGGCTACAATAAGCTTCACATGTACAAAAGTACTATCCTGGTTTTCCAGCGCTTGAAATCTGCTAAAATTGAAGCAGATTCTGGATGTTACTGCAGGGTCATGGAAGCCTACCTTAAACTTGGGGATTCTGAGAGAATTATGGAACTGTTTAATGAAATTGAGAGTAGGATTTCTGATTTTACACCCTTTTCCACCAAAATTTATGGGATACTTTGTAAGTCATTAGCGAAATCGGGGCGAGTTTTCGAGTCGCTCGAGTTCTTTAGAGATATGAGGAAGAAAGGGATTGTAGAAGATTACACCATTTACTCTGCTTTGATATGCACTTTTGCAAGTATCCAAGAAGTTAAATTAGCTGAAGATCTTTACAATGAAGCAAAAACCAAGAAGTTATTGAGAGACCCTGCAATGTTTCAAAAGCTTATATTGATGTATATTCAACAAGGGTCATTAGAGAAAGCACTTGAGATTGTTGAAGTGATGAAGGACTTCAAAATTGGTGTATCAGATTGCATTTTCTGTGCAATTGTCAATGGCTACGCCACGAGAAGGGGCTATAATGCTGCGGTTAATGTTTACGAAAAGCTGATTAGAGACGAGTGCGAGCCAGGACAAGTGACGTACGCCTTGGCGATCAACGCTTACTGCCGTGTTGGGCTGTACTCAAAAGCGGAGGACGTGTTTGTAGAAATGGAGGAGAAGGGGTTTGACAAATGTGTAGTTGCTTACTCTAGCTTGATATCAATGTATGGGAAGACAGGGAGATTGAAGGATGCAATGAGGCTGTTAGCAAAGATGAAAGAAAGAGGGTGTCAGCCAAATGTTTGGATTTACAATATCCTGATGGAGATGCATGGGAAGGCTAAGAATTTGAAGCAAGTTGAGAAGCTATGGAAGGAAATGAAGCGCAAAAAGATAGCACCTGATAAGGTTAGCTATACAAGTATCATAAATGCTTATGTGAAGGCAGCAGAATTCGAGACATGCGAGCGATATTACCGTGAGTTTCGGATGAACGGGGGAGCCATCGACAAGGCGATAGCGGGAATCATGGTTGGCGTGTTCTCGAAGACGAGTCGGGTTGATGAACTGGTGAAGCTTCTTAGGGACATGAACTTAGAAGGAATACGCTTGGATGAGAGGCTGTATAGGTCAGCCTTGAATGCTTTGTTGGATGCTGGGTTGCAAGTGCAAGCAAAATGGTTGCAAGATCATTGTGCTGGAAAGTCGGGCTTTGTTTAA

mRNA sequence

ATGGCCGTCACTGGCTCTCCCGACTGGTCACTCCCCTCATCAACCTGTTTCAGAAAATCCCGTCTCCTTACTTTCATCCCCGCCTCCAATCTCGCTCTCCTTTTCTCTCTTCCAAATCTTCGATCTCTTCACCTAAATTCTTCCGGGTGCCCGTCACCAATCCTAGAATCATCGCCCACTTCCCTCCCCGAGATCGATTCGGACTCTAATCTTCAGGATTTTCAACTTCCCTCGTCGTCCAGTGTAGAAGATTTGAACGATTTCTTATGTGGATTACCCCAAAACCCCGGACGGGAGGATTTGATCTATGAGTACTACGTGAAAGCGAAGGAAACGCCAGGGTTTAGACCTGAGAAATCAACATTGAGGCATCTAATCAGGTACTTAGTGCGATCGAAGAACTGGAATTTGATTTTTTTAGTTTCTAGAGATTTTGTGGATTATGATGTTTGCCCTGATAGAGATACTTGTTCTAGATTGGTTAGTAGTTGCGTTAGAGGTAGAAAATTTAAAGTTGTTAGGGCTCTGCTTGAGGTTTTTGAACGGGATAGGGATGTTGCTACGGCTGCATTTGAAGCTGCCATGAGAGGCTACAATAAGCTTCACATGTACAAAAGTACTATCCTGGTTTTCCAGCGCTTGAAATCTGCTAAAATTGAAGCAGATTCTGGATGTTACTGCAGGGTCATGGAAGCCTACCTTAAACTTGGGGATTCTGAGAGAATTATGGAACTGTTTAATGAAATTGAGAGTAGGATTTCTGATTTTACACCCTTTTCCACCAAAATTTATGGGATACTTTGTAAGTCATTAGCGAAATCGGGGCGAGTTTTCGAGTCGCTCGAGTTCTTTAGAGATATGAGGAAGAAAGGGATTGTAGAAGATTACACCATTTACTCTGCTTTGATATGCACTTTTGCAAGTATCCAAGAAGTTAAATTAGCTGAAGATCTTTACAATGAAGCAAAAACCAAGAAGTTATTGAGAGACCCTGCAATGTTTCAAAAGCTTATATTGATGTATATTCAACAAGGGTCATTAGAGAAAGCACTTGAGATTGTTGAAGTGATGAAGGACTTCAAAATTGGTGTATCAGATTGCATTTTCTGTGCAATTGTCAATGGCTACGCCACGAGAAGGGGCTATAATGCTGCGGTTAATGTTTACGAAAAGCTGATTAGAGACGAGTGCGAGCCAGGACAAGTGACGTACGCCTTGGCGATCAACGCTTACTGCCGTGTTGGGCTGTACTCAAAAGCGGAGGACGTGTTTGTAGAAATGGAGGAGAAGGGGTTTGACAAATGTGTAGTTGCTTACTCTAGCTTGATATCAATGTATGGGAAGACAGGGAGATTGAAGGATGCAATGAGGCTGTTAGCAAAGATGAAAGAAAGAGGGTGTCAGCCAAATGTTTGGATTTACAATATCCTGATGGAGATGCATGGGAAGGCTAAGAATTTGAAGCAAGTTGAGAAGCTATGGAAGGAAATGAAGCGCAAAAAGATAGCACCTGATAAGGTTAGCTATACAAGTATCATAAATGCTTATGTGAAGGCAGCAGAATTCGAGACATGCGAGCGATATTACCGTGAGTTTCGGATGAACGGGGGAGCCATCGACAAGGCGATAGCGGGAATCATGGTTGGCGTGTTCTCGAAGACGAGTCGGGTTGATGAACTGGTGAAGCTTCTTAGGGACATGAACTTAGAAGGAATACGCTTGGATGAGAGGCTGTATAGGTCAGCCTTGAATGCTTTGTTGGATGCTGGGTTGCAAGTGCAAGCAAAATGGTTGCAAGATCATTGTGCTGGAAAGTCGGGCTTTGTTTAA

Coding sequence (CDS)

ATGGCCGTCACTGGCTCTCCCGACTGGTCACTCCCCTCATCAACCTGTTTCAGAAAATCCCGTCTCCTTACTTTCATCCCCGCCTCCAATCTCGCTCTCCTTTTCTCTCTTCCAAATCTTCGATCTCTTCACCTAAATTCTTCCGGGTGCCCGTCACCAATCCTAGAATCATCGCCCACTTCCCTCCCCGAGATCGATTCGGACTCTAATCTTCAGGATTTTCAACTTCCCTCGTCGTCCAGTGTAGAAGATTTGAACGATTTCTTATGTGGATTACCCCAAAACCCCGGACGGGAGGATTTGATCTATGAGTACTACGTGAAAGCGAAGGAAACGCCAGGGTTTAGACCTGAGAAATCAACATTGAGGCATCTAATCAGGTACTTAGTGCGATCGAAGAACTGGAATTTGATTTTTTTAGTTTCTAGAGATTTTGTGGATTATGATGTTTGCCCTGATAGAGATACTTGTTCTAGATTGGTTAGTAGTTGCGTTAGAGGTAGAAAATTTAAAGTTGTTAGGGCTCTGCTTGAGGTTTTTGAACGGGATAGGGATGTTGCTACGGCTGCATTTGAAGCTGCCATGAGAGGCTACAATAAGCTTCACATGTACAAAAGTACTATCCTGGTTTTCCAGCGCTTGAAATCTGCTAAAATTGAAGCAGATTCTGGATGTTACTGCAGGGTCATGGAAGCCTACCTTAAACTTGGGGATTCTGAGAGAATTATGGAACTGTTTAATGAAATTGAGAGTAGGATTTCTGATTTTACACCCTTTTCCACCAAAATTTATGGGATACTTTGTAAGTCATTAGCGAAATCGGGGCGAGTTTTCGAGTCGCTCGAGTTCTTTAGAGATATGAGGAAGAAAGGGATTGTAGAAGATTACACCATTTACTCTGCTTTGATATGCACTTTTGCAAGTATCCAAGAAGTTAAATTAGCTGAAGATCTTTACAATGAAGCAAAAACCAAGAAGTTATTGAGAGACCCTGCAATGTTTCAAAAGCTTATATTGATGTATATTCAACAAGGGTCATTAGAGAAAGCACTTGAGATTGTTGAAGTGATGAAGGACTTCAAAATTGGTGTATCAGATTGCATTTTCTGTGCAATTGTCAATGGCTACGCCACGAGAAGGGGCTATAATGCTGCGGTTAATGTTTACGAAAAGCTGATTAGAGACGAGTGCGAGCCAGGACAAGTGACGTACGCCTTGGCGATCAACGCTTACTGCCGTGTTGGGCTGTACTCAAAAGCGGAGGACGTGTTTGTAGAAATGGAGGAGAAGGGGTTTGACAAATGTGTAGTTGCTTACTCTAGCTTGATATCAATGTATGGGAAGACAGGGAGATTGAAGGATGCAATGAGGCTGTTAGCAAAGATGAAAGAAAGAGGGTGTCAGCCAAATGTTTGGATTTACAATATCCTGATGGAGATGCATGGGAAGGCTAAGAATTTGAAGCAAGTTGAGAAGCTATGGAAGGAAATGAAGCGCAAAAAGATAGCACCTGATAAGGTTAGCTATACAAGTATCATAAATGCTTATGTGAAGGCAGCAGAATTCGAGACATGCGAGCGATATTACCGTGAGTTTCGGATGAACGGGGGAGCCATCGACAAGGCGATAGCGGGAATCATGGTTGGCGTGTTCTCGAAGACGAGTCGGGTTGATGAACTGGTGAAGCTTCTTAGGGACATGAACTTAGAAGGAATACGCTTGGATGAGAGGCTGTATAGGTCAGCCTTGAATGCTTTGTTGGATGCTGGGTTGCAAGTGCAAGCAAAATGGTTGCAAGATCATTGTGCTGGAAAGTCGGGCTTTGTTTAA

Protein sequence

MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPTSLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKSTLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVFERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSERIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTIYSALICTFASIQEVKLAEDLYNEAKTKKLLRDPAMFQKLILMYIQQGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYNAAVNVYEKLIRDECEPGQVTYALAINAYCRVGLYSKAEDVFVEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKERGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIINAYVKAAEFETCERYYREFRMNGGAIDKAIAGIMVGVFSKTSRVDELVKLLRDMNLEGIRLDERLYRSALNALLDAGLQVQAKWLQDHCAGKSGFV

Homology

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BLAST of Carg01339 vs. NCBI nr
Match: XP_022938691.1 (pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucurbita moschata])

HSP 1 Score: 595.1 bits (1533), Expect = 2.6e-166
Identity = 297/298 (99.66%), Postives = 297/298 (99.66%), Query Frame = 0


Query: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPT 60
           MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPT
Sbjct: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPT 60

Query: 61  SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS 120
           SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS
Sbjct: 61  SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS 120

Query: 121 TLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF 180
           TLRHLIRYLVRSKNWNLI LVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF
Sbjct: 121 TLRHLIRYLVRSKNWNLILLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF 180

Query: 181 ERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSE 240
           ERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSE
Sbjct: 181 ERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSE 240

Query: 241 RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI 299
           RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI
Sbjct: 241 RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI 298

[Close]

BLAST of Carg01339 vs. NCBI nr
Match: XP_022993436.1 (pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 586.6 bits (1511), Expect = 9.4e-164
Identity = 292/298 (97.99%), Postives = 295/298 (98.99%), Query Frame = 0


Query: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPT 60
           MAVTGSPDWSLPSSTCFRKSRL+TFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPT
Sbjct: 1   MAVTGSPDWSLPSSTCFRKSRLITFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPT 60

Query: 61  SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS 120
           SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS
Sbjct: 61  SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS 120

Query: 121 TLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF 180
           TLRHLIRYLVR K W+LI LVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF
Sbjct: 121 TLRHLIRYLVRLKKWSLILLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF 180

Query: 181 ERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSE 240
           ERDRDVATAAFEAAMRGYNKLHMY+STILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSE
Sbjct: 181 ERDRDVATAAFEAAMRGYNKLHMYRSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSE 240

Query: 241 RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI 299
           RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI
Sbjct: 241 RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI 298

[Close]

BLAST of Carg01339 vs. NCBI nr
Match: XP_023551389.1 (pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 584.3 bits (1505), Expect = 4.7e-163
Identity = 292/297 (98.32%), Postives = 294/297 (98.99%), Query Frame = 0


Query: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPT 60
           MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESS T
Sbjct: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSHT 60

Query: 61  SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS 120
           SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS
Sbjct: 61  SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS 120

Query: 121 TLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF 180
           TLRHLIRYLVRSKNWNLI LVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF
Sbjct: 121 TLRHLIRYLVRSKNWNLILLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF 180

Query: 181 ERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSE 240
           ERD+DVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEA LKLGDS+
Sbjct: 181 ERDKDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEACLKLGDSD 240

Query: 241 RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYT 298
           RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYT
Sbjct: 241 RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYT 297

[Close]

BLAST of Carg01339 vs. NCBI nr
Match: XP_004151188.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucumis sativus] >KGN49761.1 hypothetical protein Csa_5G114580 [Cucumis sativus])

HSP 1 Score: 464.2 bits (1193), Expect = 7.0e-127
Identity = 237/300 (79.00%), Postives = 255/300 (85.00%), Query Frame = 0


Query: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLP--NLRSLHLNSSGCPSPILESS 60
           MA++ SPD S P S  FRKS    FI  SN +LLFSLP  NL SLHLNSSGCPSPILE  
Sbjct: 1   MALSPSPDCSFPPSNSFRKSH---FISTSNFSLLFSLPTSNLPSLHLNSSGCPSPILEQX 60

Query: 61  PTSLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPE 120
                     SNL DFQLPS  +V+DLNDFLCGL QNPG EDLIY+YYVKAKET GFRP+
Sbjct: 61  XXXXXXXXXXSNLHDFQLPSLPNVQDLNDFLCGLSQNPGTEDLIYDYYVKAKETAGFRPQ 120

Query: 121 KSTLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLE 180
           KSTLRHLIRYLVR K W+LI LVSRDFVD+ VCPDRDTCS+LVSSCVRGRKFKVV++LLE
Sbjct: 121 KSTLRHLIRYLVRLKKWDLILLVSRDFVDFGVCPDRDTCSKLVSSCVRGRKFKVVKSLLE 180

Query: 181 VFERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGD 240
           VFERD  VA  AFEAAMRGYNKLHM+KSTI+VFQRLKSA+IEADSGCYCRVMEAYLKLGD
Sbjct: 181 VFERDSGVAMTAFEAAMRGYNKLHMHKSTIMVFQRLKSARIEADSGCYCRVMEAYLKLGD 240

Query: 241 SERIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI 299
           SER+MELFNE+ESRIS  TPFSTKIYGILC+SLAKSGRVFESLEFFRDMRKKGI EDYTI
Sbjct: 241 SERVMELFNEVESRISVSTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKGIAEDYTI 297

[Close]

BLAST of Carg01339 vs. NCBI nr
Match: XP_008465506.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucumis melo])

HSP 1 Score: 451.4 bits (1160), Expect = 4.7e-123
Identity = 231/298 (77.52%), Postives = 247/298 (82.89%), Query Frame = 0


Query: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPT 60
           MAV+ SPD S P S  FRKS                       HLNSSG PSPILE    
Sbjct: 1   MAVSPSPDCSFPPSNSFRKSH-XXXXXXXXXXXXXXXXXXXXXHLNSSGFPSPILEQPSI 60

Query: 61  SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS 120
           +LP+I S+SNL DFQLP  S+VEDLNDFLCGL QNPG EDLIY+YYVKAKE  GFRPEKS
Sbjct: 61  ALPDIHSNSNLHDFQLPPLSNVEDLNDFLCGLSQNPGTEDLIYDYYVKAKERAGFRPEKS 120

Query: 121 TLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF 180
           TLRHLIRYLVR K W+LIFLVSRDFVD+ VCPDRDTCS+LVSSCVRGRKFKVV+ALLEVF
Sbjct: 121 TLRHLIRYLVRLKKWDLIFLVSRDFVDFGVCPDRDTCSKLVSSCVRGRKFKVVKALLEVF 180

Query: 181 ERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSE 240
           ERD DVA  AFEAAMRGYNKLHMYKSTI+VFQRLKSA+IEADSGCY RVMEAYLKLGDSE
Sbjct: 181 ERDSDVAMTAFEAAMRGYNKLHMYKSTIMVFQRLKSARIEADSGCYFRVMEAYLKLGDSE 240

Query: 241 RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI 299
           R+MELFNE+ESRIS+ TPFSTKIYGILC+SLAKSGRVFESLEFFRDMRKKGI EDYTI
Sbjct: 241 RVMELFNEVESRISNLTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKGIAEDYTI 297

[Close]

BLAST of Carg01339 vs. TAIR10
Match: AT5G13770.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 195.7 bits (496), Expect = 8.5e-50
Identity = 113/255 (44.31%), Postives = 151/255 (59.22%), Query Frame = 0


Query: 42  SLHLNSSGCPSPILESSPTSLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDL 101
           + H+ SS C S +LE      P    D     F  P  +   DLN  L    ++P    L
Sbjct: 37  NFHVCSSRC-SMVLEEDEKKSPSPKEDK--WPFFEPGPN---DLNRVLSRFLRDPETRKL 96

Query: 102 IYEYYVKAKETPGFRPEKSTLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLV 161
             E+Y KAKE    R    T +HLI YLV SK+W+L+  V  D  ++   PD  TCS L+
Sbjct: 97  SSEFYEKAKENSELR----TTKHLISYLVSSKSWDLLVSVCEDLREHKALPDGQTCSNLI 156

Query: 162 SSCVRGRKFKVVRALLEVFERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLK-SAKIE 221
            SC+R RKF++   LL VF  D+ +A +A +AAM+G+NKL MY STI VF RLK S  +E
Sbjct: 157 RSCIRDRKFRITHCLLSVFRSDKSLAVSASDAAMKGFNKLQMYSSTIQVFDRLKQSVGVE 216

Query: 222 ADSGCYCRVMEAYLKLGDSERIMELFNEIES-RISDFTPFSTKIYGILCKSLAKSGRVFE 281
              GCYCR+MEA+ K+G++ +++ELF E +S R+S     S  IY I+C SLAKSGR FE
Sbjct: 217 PSPGCYCRIMEAHEKIGENHKVVELFQEFKSQRLSFLAKESGSIYTIVCSSLAKSGRAFE 276

Query: 282 SLEFFRDMRKKGIVE 295
           +LE   +M+ KGI E
Sbjct: 277 ALEVLEEMKDKGIPE 281

[Close]

BLAST of Carg01339 vs. Swiss-Prot
Match: sp|Q66GP4|PP379_ARATH (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g13770 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.5e-48
Identity = 113/255 (44.31%), Postives = 151/255 (59.22%), Query Frame = 0


Query: 42  SLHLNSSGCPSPILESSPTSLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDL 101
           + H+ SS C S +LE      P    D     F  P  +   DLN  L    ++P    L
Sbjct: 37  NFHVCSSRC-SMVLEEDEKKSPSPKEDK--WPFFEPGPN---DLNRVLSRFLRDPETRKL 96

Query: 102 IYEYYVKAKETPGFRPEKSTLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLV 161
             E+Y KAKE    R    T +HLI YLV SK+W+L+  V  D  ++   PD  TCS L+
Sbjct: 97  SSEFYEKAKENSELR----TTKHLISYLVSSKSWDLLVSVCEDLREHKALPDGQTCSNLI 156

Query: 162 SSCVRGRKFKVVRALLEVFERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLK-SAKIE 221
            SC+R RKF++   LL VF  D+ +A +A +AAM+G+NKL MY STI VF RLK S  +E
Sbjct: 157 RSCIRDRKFRITHCLLSVFRSDKSLAVSASDAAMKGFNKLQMYSSTIQVFDRLKQSVGVE 216

Query: 222 ADSGCYCRVMEAYLKLGDSERIMELFNEIES-RISDFTPFSTKIYGILCKSLAKSGRVFE 281
              GCYCR+MEA+ K+G++ +++ELF E +S R+S     S  IY I+C SLAKSGR FE
Sbjct: 217 PSPGCYCRIMEAHEKIGENHKVVELFQEFKSQRLSFLAKESGSIYTIVCSSLAKSGRAFE 276

Query: 282 SLEFFRDMRKKGIVE 295
           +LE   +M+ KGI E
Sbjct: 277 ALEVLEEMKDKGIPE 281

[Close]

BLAST of Carg01339 vs. TrEMBL
Match: tr|A0A0A0KPV8|A0A0A0KPV8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114580 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 4.7e-127
Identity = 237/300 (79.00%), Postives = 255/300 (85.00%), Query Frame = 0


Query: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLP--NLRSLHLNSSGCPSPILESS 60
           MA++ SPD S P S  FRKS    FI  SN +LLFSLP  NL SLHLNSSGCPSPILE  
Sbjct: 1   MALSPSPDCSFPPSNSFRKSH---FISTSNFSLLFSLPTSNLPSLHLNSSGCPSPILEQX 60

Query: 61  PTSLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPE 120
                     SNL DFQLPS  +V+DLNDFLCGL QNPG EDLIY+YYVKAKET GFRP+
Sbjct: 61  XXXXXXXXXXSNLHDFQLPSLPNVQDLNDFLCGLSQNPGTEDLIYDYYVKAKETAGFRPQ 120

Query: 121 KSTLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLE 180
           KSTLRHLIRYLVR K W+LI LVSRDFVD+ VCPDRDTCS+LVSSCVRGRKFKVV++LLE
Sbjct: 121 KSTLRHLIRYLVRLKKWDLILLVSRDFVDFGVCPDRDTCSKLVSSCVRGRKFKVVKSLLE 180

Query: 181 VFERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGD 240
           VFERD  VA  AFEAAMRGYNKLHM+KSTI+VFQRLKSA+IEADSGCYCRVMEAYLKLGD
Sbjct: 181 VFERDSGVAMTAFEAAMRGYNKLHMHKSTIMVFQRLKSARIEADSGCYCRVMEAYLKLGD 240

Query: 241 SERIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI 299
           SER+MELFNE+ESRIS  TPFSTKIYGILC+SLAKSGRVFESLEFFRDMRKKGI EDYTI
Sbjct: 241 SERVMELFNEVESRISVSTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKGIAEDYTI 297

[Close]

BLAST of Carg01339 vs. TrEMBL
Match: tr|A0A1S3CPF0|A0A1S3CPF0_CUCME (pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503127 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 3.1e-123
Identity = 231/298 (77.52%), Postives = 247/298 (82.89%), Query Frame = 0


Query: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPT 60
           MAV+ SPD S P S  FRKS                       HLNSSG PSPILE    
Sbjct: 1   MAVSPSPDCSFPPSNSFRKSH-XXXXXXXXXXXXXXXXXXXXXHLNSSGFPSPILEQPSI 60

Query: 61  SLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKS 120
           +LP+I S+SNL DFQLP  S+VEDLNDFLCGL QNPG EDLIY+YYVKAKE  GFRPEKS
Sbjct: 61  ALPDIHSNSNLHDFQLPPLSNVEDLNDFLCGLSQNPGTEDLIYDYYVKAKERAGFRPEKS 120

Query: 121 TLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVF 180
           TLRHLIRYLVR K W+LIFLVSRDFVD+ VCPDRDTCS+LVSSCVRGRKFKVV+ALLEVF
Sbjct: 121 TLRHLIRYLVRLKKWDLIFLVSRDFVDFGVCPDRDTCSKLVSSCVRGRKFKVVKALLEVF 180

Query: 181 ERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSE 240
           ERD DVA  AFEAAMRGYNKLHMYKSTI+VFQRLKSA+IEADSGCY RVMEAYLKLGDSE
Sbjct: 181 ERDSDVAMTAFEAAMRGYNKLHMYKSTIMVFQRLKSARIEADSGCYFRVMEAYLKLGDSE 240

Query: 241 RIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTI 299
           R+MELFNE+ESRIS+ TPFSTKIYGILC+SLAKSGRVFESLEFFRDMRKKGI EDYTI
Sbjct: 241 RVMELFNEVESRISNLTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKGIAEDYTI 297

[Close]

BLAST of Carg01339 vs. TrEMBL
Match: tr|A0A251R7G6|A0A251R7G6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G342100 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 2.6e-77
Identity = 160/299 (53.51%), Postives = 203/299 (67.89%), Query Frame = 0


Query: 2   AVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLP--NLRSLHLNSSGCPSPILE-SS 61
           +   S DWSL      R++    F  +   +  FS+P  NLR  ++NSSGC SPILE  +
Sbjct: 6   SAASSADWSLAWVISCRETHKFNFFTSCKTSSSFSIPCYNLRVFNVNSSGCHSPILEDEA 65

Query: 62  PTSLPEIDSDSNLQDFQLP-SSSSVEDLNDFLCGLPQNPGREDLIYEYYVKA-KETPGFR 121
            T+LP I+ D    D Q   S+   ++LNDFLCGL Q+   E+  YE Y KA K+ P F 
Sbjct: 66  STTLPVIELDLKFPDPQEEFSTPDADNLNDFLCGLFQDRQTEEFAYEQYEKAKKKRPEFI 125

Query: 122 PEKSTLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRAL 181
           P KST  HLIRYL+RSK W  +  V  DF +Y V PD  TCSRL++SC+R RKFK+VR L
Sbjct: 126 PNKSTFEHLIRYLIRSKKWGSVLSVCDDFKNYHVLPDSYTCSRLIASCIRARKFKMVRTL 185

Query: 182 LEVFERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKL 241
           LEVF+ D DVA  AF++AMRGYN+LHM+KSTI +F+R+KS  I  +SGCYCR+MEAY K 
Sbjct: 186 LEVFKADDDVAVPAFDSAMRGYNELHMFKSTISLFERMKSNGIVPNSGCYCRIMEAYFKK 245

Query: 242 GDSERIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVED 296
           GDS +++ELF E+ SR  DFTPFST+IYGILC+SL K G+ FE+LE FR   K+GI  D
Sbjct: 246 GDSRKVVELFYELGSRQLDFTPFSTQIYGILCESLTKLGQPFEALEVFRSRTKEGISLD 304

[Close]

BLAST of Carg01339 vs. TrEMBL
Match: tr|A0A2K1YRM5|A0A2K1YRM5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G098700v3 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 4.6e-74
Identity = 154/305 (50.49%), Postives = 201/305 (65.90%), Query Frame = 0


Query: 1   MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLP--NLRSLHLN-SSGCPSPILES 60
           MA++ SPDWS PS    RK   + F         F LP  N+   H+N SS CPSPILE 
Sbjct: 1   MAISSSPDWSAPSINSCRKPHKIIFPQTCKTLHFFPLPCFNIPGCHVNSSSSCPSPILEE 60

Query: 61  SP--TSLPEIDSDSNLQDFQ-LPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPG 120
            P  T+ P I  D  L+D Q  P     + LNDFLCG+ Q+P  E+L YEYY KAKE P 
Sbjct: 61  EPISTNFPVIQLDLKLEDTQRYPIPDHPDKLNDFLCGVLQDPKSEELAYEYYKKAKEKPE 120

Query: 121 FRPEKSTLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVR 180
           FRP++  L+ LIRYL++S  W L+  ++ DF  Y+V PD  T S LVSSC+R R+FK+V 
Sbjct: 121 FRPQRPVLKLLIRYLIQSDKWGLVLSLADDFKKYNVFPDSFTFSTLVSSCIRARRFKIVE 180

Query: 181 ALLEVFERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYL 240
            LLE F+ D  +A  AF++AM+GYNKLHMY STI V +++  A I  DS CYC++M+AY 
Sbjct: 181 NLLENFKSDSKIAVLAFDSAMKGYNKLHMYGSTISVHEKMILAGIPLDSRCYCQIMKAYY 240

Query: 241 KLGDSERIMELFNEIESRISDFTPFSTK-IYGILCKSLAKSGRVFESLEFFRDMRKKGIV 299
           KLGD+E+++ LFNE ESR  D  P   + I+ ILC SL +SG+ F++LE+ RDMRKKGI+
Sbjct: 241 KLGDAEKVVALFNEFESRKLDSKPMILRQIFKILCLSLGRSGQAFQALEYSRDMRKKGIL 300

[Close]

BLAST of Carg01339 vs. TrEMBL
Match: tr|A0A2C9U6I0|A0A2C9U6I0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G093400 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 7.8e-74
Identity = 154/305 (50.49%), Postives = 206/305 (67.54%), Query Frame = 0


Query: 1   MAVTGSPDWSLPS-STCFRKSRLLTFIPASNLALLFSLP----NLRSLHLNSSGCPSPIL 60
           MA++ SPDWS+ S ++C     ++ F P S   L F  P    N    H+NSS CPSPIL
Sbjct: 1   MAISRSPDWSVASINSCRNPHHIIIFSP-SWKTLSFLSPTCSSNFPLFHVNSSSCPSPIL 60

Query: 61  ES-SPTSLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPG 120
           E  S  + P +  DS++QD Q P S   E+LNDFLCG+ Q+P  E L YEYY KA E   
Sbjct: 61  EEPSSANFPVVQWDSSVQDSQEPDS---ENLNDFLCGVLQDPRTEHLAYEYYKKATERQE 120

Query: 121 FRPEKSTLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVR 180
           F+PEKS L+ L+RYL+RSKNW  I  VS DFV Y+  PD  TCS LVSSCV+ RKF++V 
Sbjct: 121 FKPEKSMLKLLMRYLIRSKNWGFILSVSDDFVKYNSLPDSHTCSILVSSCVKARKFRIVE 180

Query: 181 ALLEVFERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYL 240
            LLE+F+   ++A  AF++AMRGYNKLHMY  TI V++++K   I  DSG Y ++M+AY 
Sbjct: 181 TLLEIFKSYGEIAVFAFDSAMRGYNKLHMYGRTIFVYEKMKLTGISMDSGSYYQIMKAYQ 240

Query: 241 KLGDSERIMELFNEIESR-ISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIV 299
           K+GD+E+++ LF+E ESR +    P   +I+ +LC++L +SGR FE+LE+F DMRKKGI+
Sbjct: 241 KIGDTEKVLALFHEFESRKLEHSRPVLIQIFRVLCETLGRSGRAFEALEYFGDMRKKGIL 300

The following BLAST results are available for this feature:

BLAST of Carg01339 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938691.1	2.6e-166	99.66	pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucurbita ...	[more]
XP_022993436.1	9.4e-164	97.99	pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X1 ...	[more]
XP_023551389.1	4.7e-163	98.32	pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X1 ...	[more]
XP_004151188.1	7.0e-127	79.00	PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic ...	[more]
XP_008465506.1	4.7e-123	77.52	PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic ...	[more]

BLAST of Carg01339 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13770.1	8.5e-50	44.31	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of Carg01339 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q66GP4\|PP379_ARATH	1.5e-48	44.31	Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidop...	[more]

BLAST of Carg01339 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPV8\|A0A0A0KPV8_CUCSA	4.7e-127	79.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114580 PE=4 SV=1	[more]
tr\|A0A1S3CPF0\|A0A1S3CPF0_CUCME	3.1e-123	77.52	pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Cucumis ...	[more]
tr\|A0A251R7G6\|A0A251R7G6_PRUPE	2.6e-77	53.51	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G342100 PE=4 SV=1	[more]
tr\|A0A2K1YRM5\|A0A2K1YRM5_POPTR	4.6e-74	50.49	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G098700v3 PE=...	[more]
tr\|A0A2C9U6I0\|A0A2C9U6I0_MANES	7.8e-74	50.49	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G093400 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01339-RA	Carg01339-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 95..255 e-value: 9.6E-14 score: 53.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 331..499 e-value: 9.4E-41 score: 142.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 500..601 e-value: 5.6E-15 score: 57.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 256..328 e-value: 6.0E-8 score: 34.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 423..483 e-value: 2.1E-13 score: 50.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 473..505 e-value: 2.1E-7 score: 28.7 coord: 437..471 e-value: 1.4E-9 score: 35.5 coord: 402..432 e-value: 3.9E-7 score: 27.8 coord: 507..536 e-value: 1.3E-4 score: 19.9 coord: 264..293 e-value: 0.0017 score: 16.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 507..536 e-value: 0.0046 score: 17.0 coord: 226..251 e-value: 0.16 score: 12.2 coord: 265..292 e-value: 0.0042 score: 17.1 coord: 337..361 e-value: 0.77 score: 10.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 260..294 score: 9.898
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 295..329 score: 6.796
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 187..221 score: 5.93
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 400..434 score: 11.027
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 435..469 score: 12.869
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 470..504 score: 10.961
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 505..539 score: 8.692
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 153..183 score: 5.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 365..399 score: 7.728
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 118..152 score: 5.119
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 330..364 score: 8.199
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 540..574 score: 7.53
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 222..252 score: 7.717
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 26..600
None	No IPR available	PANTHER	PTHR24015:SF785	SUBFAMILY NOT NAMED	coord: 26..600

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01339	Cla005838	Watermelon (97103) v1	carwmB0830
Carg01339	Csa5G114580	Cucumber (Chinese Long) v2	carcuB0842
Carg01339	ClCG01G006970	Watermelon (Charleston Gray)	carwcgB0800
Carg01339	CSPI05G02160	Wild cucumber (PI 183967)	carcpiB0862
Carg01339	Cucsa.377340	Cucumber (Gy14) v1	carcgyB0958
Carg01339	CmaCh15G008670	Cucurbita maxima (Rimu)	carcmaB1148
Carg01339	CmoCh15G009020	Cucurbita moschata (Rifu)	carcmoB1118
Carg01339	Lsi09G007400	Bottle gourd (USVL1VR-Ls)	carlsiB754
Carg01339	Cp4.1LG01g18760	Cucurbita pepo (Zucchini)	carcpeB1158
Carg01339	Cp4.1LG13g06330	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01339	CsGy5G012250	Cucumber (Gy14) v2	carcgybB0817
Carg01339	CsaV3_5G017390	Cucumber (Chinese Long) v3	carcucB0866
Carg01339	Cla97C01G007360	Watermelon (97103) v2	carwmbB0858
Carg01339	Bhi12G000883	Wax gourd	carwgoB0963

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01339	Silver-seed gourd	carcarB469
Carg01339	Cucurbita maxima (Rimu)	carcmaB1150
Carg01339	Cucurbita moschata (Rifu)	carcmoB1121
Carg01339	Melon (DHL92) v3.5.1	carmeB0820
Carg01339	Melon (DHL92) v3.5.1	carmeB0821
Carg01339	Melon (DHL92) v3.6.1	carmedB0831
Carg01339	Melon (DHL92) v3.6.1	carmedB0832