Cp4.1LG01g18010 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g18010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RING finger protein 113A, putative
Location	Cp4.1LG01 : 15336399 .. 15339529 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGTTTGAACGAAGTTTCTTTGGACGTTTTGAAGACGTTATGAGTTAACGCACAAGAACTTCAAATCGCTTAACCAACAGCTTTGATCGATATCCCTTTGCGACTCATTCACAACTTCAAGGGCTTTACAATTGGGAAAAGGACGGAAACCTAAAAACCCTAATTTCCTTCTTTTTAATTCGGGGACACCAGCCCTTCCGACCTTCTCTCTGCCGGGGCACCGAAACAGGTCCGCGGCCACGTTCTCACCTTTGGCAGTAAACTCCGACTCCTGACGGACACCCAGCACACGGCAGATCCGGCGGCGCGGGCGGCGTTGATAGACCCTCGAACGACCAGCTGCGAACAGGGAGACCCACAGCAGCGGGACCTCTCAATCTGCGACGGTGAGCCTAAATCTGACAGCCGCGGCTCCTACCCACAACCCTTACAAACCCTCCACGCCTATTTCGATCATCGGAGAGTTTGAGAGATAGTTTATTCAATTCGTTCTTTCTTGTTTTCAATTGTGGAATCTGCTTTAAAGTTTATTCAATTCGTTCTTTCTTGTTTTCAATTGTGGAATCTGCTTTAAATCCTTCTGGTCTTACTCGTACACAATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGGTATTAGCGATTTTTTCTCTATCCAAATATTTTAACGTGTATATAAGTTTTCGCATTTTCATCAAGAGGTTTCTTTTTTATTTTATTTTTATTTTTATTTTTTTATTTTTATGTTTATGATTTTTCTGAAATTAGTGACTCTCCATACGTTTTTAATCCTTTGATCTTCAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATTAGAAAGCGGACGGTTGATGAAGATGAAGAGGACTCTAAAAGTAGTGAGACTTCGGTGCTGCAAAATCAGAAAAAAGCCCCCAAGACAGATAGCAAACTTTATTTTTCTTCTGGGCCTTCTAAAAGTAACTTGACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCCACTGCAACATTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATACGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTAAAGGGCAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCTCATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCGAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGAGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTGGAAAAGGCAAGGAAGAGAAAACTAGCCATGAAATCTGATGACGGTGATGAGGATGCTGCAGAACAGAGTGATGAAGATGAGGAAGATGCCTTGCCCTTTGCTTGTTTTATTTGTCGTGAGCCATTTGTGGATCCTGTAGTGACCAAATGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATACCTCTTTTCTGCTCTTAATTATGTCTTAATTATCTCGGCATCGTAAACATGTTTGATCTTGAAGTCCTTTCTTCTCTGGGAGGTTTAAATTTGTTTCAGAATTCAGTCTCGACTCTTGTTCCTTTTATTTTGATGCTTTTTATTTTGATGGCTGAAGCATTAGGATAATAAGCACGTATGTCAATTGATTTAATGACTTTGCATGCCTAGAGTTCATATCCTCAACTGCAGAAGTTCTGTATATTCTTGATTTGTTTTTCAAGAGCACACTTTTAGATGACCATTTCATCCTACGTCATTACATATTTGATTTCTTTGAAATGAATCTTAAATCATGTTATTTTTTTTCTTTTATAAAAATTTGCAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACACTTGGAATCTTTAACACGGCTCATGAGATAAAGAAGAAGATGGCAGAGAGTAAGTAAGTTTTTTTTTTTTTCCTTGACCTGCATTGGTCCCTTGCCAGTCTTCTTTTAATTTGTAGCAAAATTATCTTTCTCTTGCTTATTTTTTTATGAGAAAGTCCAGTTTTCAATATCTACTTCTTGATGAAGCTTAAATTCATGCCCTGCTACAATAAGAGCTTGGAGAATCTTGGATAACATTTCTGGAAATGTGGGAATATGTCAGTGTAGAAGTAGTCCATGATGAATTTATTTCTGAATTTCATCCTCGGTAATGGATTATCTTTCTGTAAATATCCCTGAAGCCCCTCAATCTACTTGTGTTCCCCCCGTTTGAAACTGAAAACCACCACTCTGACTTTATAACATTTTCCCCCCTTAGAAGTTCATGAAATAGATAGATGGTCAGAAGTGGTTTTTAACTAGGACCTTTTGTTGAACTCATAAGTGGTTTTAATTATTCAATCTTAATTCCGGATGGTATCAAGTTATCTACTCAAATATTATATTGTTTGTATTTACATATATGATTGTGTTAAAGTGTCTGTTACTTCACTACTATTCACTTTTGGTGATTGGGTCTAAACATTATTCTCATTGAAGTTCTGTTCATATCTACCGTAGGTTACAGATTGTTAAAGTACTTGGATATTGAATGTCCATTACAGATATTCATCTTTAAACTTTGCATAACGCTTAGGGACGTGAATATCTAAATTGACTTAGATATTGATTCCAGTCTTTCTACTTCTTTTGGCATTTGGAAGTAAAATTATTTGTTTAATAAAATGGTGAATATCAGGGATTTTTAGGTGTTGATATATACAACATTTTAGAAACAATAGAACTGTAGATAAATTAGAAATGTAAGGTTGAGTGCTGGTCTTTCACTGTTTTACCTTTAGTTTTGGAGGCTCAGATGAATTTAGCAGTAGCCTGTTGCATTAGGTACACCTTTATTAAGCATCTTGAGAATGTGATGACTGTTGTGGAAAGTAAAGTAGTTATGGTTGAAGTTATGTCTCATCTTACCGTCTGA

mRNA sequence

TAAGTTTGAACGAAGTTTCTTTGGACGTTTTGAAGACGTTATGAGTTAACGCACAAGAACTTCAAATCGCTTAACCAACAGCTTTGATCGATATCCCTTTGCGACTCATTCACAACTTCAAGGGCTTTACAATTGGGAAAAGGACGGAAACCTAAAAACCCTAATTTCCTTCTTTTTAATTCGGGGACACCAGCCCTTCCGACCTTCTCTCTGCCGGGGCACCGAAACAGGTCCGCGGCCACGTTCTCACCTTTGGCAGTAAACTCCGACTCCTGACGGACACCCAGCACACGGCAGATCCGGCGGCGCGGGCGGCGTTGATAGACCCTCGAACGACCAGCTGCGAACAGGGAGACCCACAGCAGCGGGACCTCTCAATCTGCGACGGTGAGCCTAAATCTGACAGCCGCGGCTCCTACCCACAACCCTTACAAACCCTCCACGCCTATTTCGATCATCGGAGAGTTTGAGAGATAGTTTATTCAATTCGTTCTTTCTTGTTTTCAATTGTGGAATCTGCTTTAAAGTTTATTCAATTCGTTCTTTCTTGTTTTCAATTGTGGAATCTGCTTTAAATCCTTCTGGTCTTACTCGTACACAATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATTAGAAAGCGGACGGTTGATGAAGATGAAGAGGACTCTAAAAGTAGTGAGACTTCGGTGCTGCAAAATCAGAAAAAAGCCCCCAAGACAGATAGCAAACTTTATTTTTCTTCTGGGCCTTCTAAAAGTAACTTGACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCCACTGCAACATTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATACGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTAAAGGGCAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCTCATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCGAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGAGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTGGAAAAGGCAAGGAAGAGAAAACTAGCCATGAAATCTGATGACGGTGATGAGGATGCTGCAGAACAGAGTGATGAAGATGAGGAAGATGCCTTGCCCTTTGCTTGTTTTATTTGTCGTGAGCCATTTGTGGATCCTGTAGTGACCAAATGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACACTTGGAATCTTTAACACGGCTCATGAGATAAAGAAGAAGATGGCAGAGAGTAACTTAAATTCATGCCCTGCTACAATAAGAGCTTGGAGAATCTTGGATAACATTTCTGGAAATGTGGGAATATTTTTGGAGGCTCAGATGAATTTAGCAGTAGCCTGTTGCATTAGGTACACCTTTATTAAGCATCTTGAGAATGTGATGACTGTTGTGGAAAGTAAAGTAGTTATGGTTGAAGTTATGTCTCATCTTACCGTCTGA

Coding sequence (CDS)

ATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATTAGAAAGCGGACGGTTGATGAAGATGAAGAGGACTCTAAAAGTAGTGAGACTTCGGTGCTGCAAAATCAGAAAAAAGCCCCCAAGACAGATAGCAAACTTTATTTTTCTTCTGGGCCTTCTAAAAGTAACTTGACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCCACTGCAACATTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATACGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTAAAGGGCAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCTCATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCGAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGAGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTGGAAAAGGCAAGGAAGAGAAAACTAGCCATGAAATCTGATGACGGTGATGAGGATGCTGCAGAACAGAGTGATGAAGATGAGGAAGATGCCTTGCCCTTTGCTTGTTTTATTTGTCGTGAGCCATTTGTGGATCCTGTAGTGACCAAATGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACACTTGGAATCTTTAACACGGCTCATGAGATAAAGAAGAAGATGGCAGAGAGTAACTTAAATTCATGCCCTGCTACAATAAGAGCTTGGAGAATCTTGGATAACATTTCTGGAAATGTGGGAATATTTTTGGAGGCTCAGATGAATTTAGCAGTAGCCTGTTGCATTAGGTACACCTTTATTAAGCATCTTGAGAATGTGATGACTGTTGTGGAAAGTAAAGTAGTTATGGTTGAAGTTATGTCTCATCTTACCGTCTGA

Protein sequence

MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLYFSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIKKKMAESNLNSCPATIRAWRILDNISGNVGIFLEAQMNLAVACCIRYTFIKHLENVMTVVESKVVMVEVMSHLTV

Homology

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BLAST of Cp4.1LG01g18010 vs. Swiss-Prot
Match: C3H1_ARATH (Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2)

HSP 1 Score: 478.0 bits (1229), Expect = 9.7e-134
Identity = 239/316 (75.63%), Postives = 271/316 (85.76%), Query Frame = 1


Query: 6   ENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKLYFSSG 65
           +  Q +QVC+FFKKPTK+KNIRKRT+D DEED  S SE+S+LQN KK  K DSKLYFSSG
Sbjct: 22  QETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSG 81

Query: 66  PSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQA 125
           PSKS+ T     E  + +F ++SSKEIQV +DS ATATLETETDF++DARAIRERVLK+A
Sbjct: 82  PSKSSTTTSGAPE--RSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKA 141

Query: 126 EEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARF 185
           +EALKG  K +  EKLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHIR SARF
Sbjct: 142 DEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARF 201

Query: 186 DYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGD 245
           DYQPDICKDYKETGYCGYGD+CKF+HDRGDYK GWQ+EKEWEE EK RKR  AM  +D D
Sbjct: 202 DYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDED 261

Query: 246 EDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPT 305
           ++A + SDED E+ALPFACFICREPFVDPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT
Sbjct: 262 DEADKDSDED-ENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPT 321

Query: 306 LGIFNTAHEIKKKMAE 321
           +GIFN AHEIKK+MAE
Sbjct: 322 MGIFNAAHEIKKRMAE 334

[Close]

BLAST of Cp4.1LG01g18010 vs. Swiss-Prot
Match: C3H51_ARATH (Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana GN=At5g06420 PE=2 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 1.1e-132
Identity = 235/319 (73.67%), Postives = 270/319 (84.64%), Query Frame = 1


Query: 3   DTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKLYF 62
           D   NQ+ +QVC+FFKKPTK+KNIRKRT+D DEED  S SE+S+LQN KK  K DS LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  SSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVL 122
           SSGPS       ++   ++P+F ++SSKEIQV +DS ATATLETETDF++DARAIRERVL
Sbjct: 117 SSGPS-----TRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVL 176

Query: 123 KQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRAS 182
           K+A+ ALKG  K +  EKLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHIR S
Sbjct: 177 KKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVS 236

Query: 183 ARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSD 242
           ARFDYQPDICKDYKETGYCGYGD+CKF+HDRGDYK GWQ+EKEWEE EK RKR  AM  +
Sbjct: 237 ARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVE 296

Query: 243 DGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCN 302
           D D++A + SDED E+ALPFACFICREPF+DPVVTKCKHYFCEHCALKHH KNKKCFVCN
Sbjct: 297 DDDDEADKDSDED-ENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCN 356

Query: 303 QPTLGIFNTAHEIKKKMAE 321
           QPT+GIFN AHEIKK+MAE
Sbjct: 357 QPTMGIFNAAHEIKKRMAE 369

[Close]

BLAST of Cp4.1LG01g18010 vs. Swiss-Prot
Match: C3H15_ORYSJ (Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica GN=Os02g0301000 PE=2 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 5.3e-116
Identity = 214/317 (67.51%), Postives = 243/317 (76.66%), Query Frame = 1


Query: 13  VCSFFKKPTKNKNIRKRTV---DEDEEDSKSSETSVLQNQKKAPKTDSKLYFSSGPSKSN 72
           VCSF +KP KN  IRKR       D++D   S        KKAP + SKL+FSS    S 
Sbjct: 18  VCSFVRKPPKN--IRKRPTAPAGSDDDDEDGSGAIAAARAKKAPSSTSKLFFSSADGSSE 77

Query: 73  LTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALK 132
                        FQ+ESS+ IQ   DSRATATLETET+F RDARAIRER LKQAEE+LK
Sbjct: 78  PRR----------FQYESSRTIQASTDSRATATLETETEFDRDARAIRERQLKQAEESLK 137

Query: 133 ------GKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASAR 192
                      SG  ++YKG++ Y DYKAGFRREHT+SSEKAGG+HGPLRASAHIR SAR
Sbjct: 138 KNPSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGSHGPLRASAHIRLSAR 197

Query: 193 FDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDG 252
           FDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQ+EKEWEE EKARKR++AM  D  
Sbjct: 198 FDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQIEKEWEEAEKARKRRIAMGGDGS 257

Query: 253 DEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQP 312
           D +A E+ D+D+E+ALPFAC+ICREPFVDPVVTKCKHYFCEHCALKHH+KNKKCFVCN+P
Sbjct: 258 DYEAGEEDDDDDEEALPFACYICREPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNKP 317

Query: 313 TLGIFNTAHEIKKKMAE 321
           TLGIFN A EI+KKMA+
Sbjct: 318 TLGIFNAAQEIRKKMAQ 322

[Close]

BLAST of Cp4.1LG01g18010 vs. Swiss-Prot
Match: R113A_BOVIN (RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-49
Identity = 128/325 (39.38%), Postives = 186/325 (57.23%), Query Frame = 1


Query: 11  EQVCSF-FKKPTKN--KNIRKRTVDEDEEDSKSSET----SVLQNQKKAPKTDSKLYFSS 70
           +QVC+F FKKP +      RKR +   E    SS +    +V++ +KK    +  +  + 
Sbjct: 12  DQVCTFLFKKPGRKVAAGRRKRPICNQESGDSSSSSDEGNTVVRPEKKRAVHNPMIQKTR 71

Query: 71  GPSKSNLT---------NESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDAR 130
           G  K  +           E+  ES   +++   S +     D  ATA  E +T+  RDA+
Sbjct: 72  GSGKQKVAYGDLSSEEEEENKSESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQ 131

Query: 131 AIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAH-GPLR 190
           AI ER  K  EE L+G+      +K+Y+G+N Y  +     ++ ++ +  +G    GP+R
Sbjct: 132 AIFERSQKIQEE-LRGQED----DKIYRGINNYQKFMKP--KDTSMGNASSGMVRKGPIR 191

Query: 191 ASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARK 250
           A  H+RA+ R+DYQPDICKDYKETG+CG+GD+CKF+HDR DYK GWQ+E+E +E      
Sbjct: 192 APEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVY 251

Query: 251 RKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAK 310
                     DE+    SDE+E   +PF CFICR+ F +PVVTKC+HYFCE CAL+H   
Sbjct: 252 E---------DENYEVGSDEEE---IPFKCFICRQTFQNPVVTKCRHYFCESCALQHFRT 311

Query: 311 NKKCFVCNQPTLGIFNTAHEIKKKM 319
             +C+VC+Q T G+FN A E+  K+
Sbjct: 312 TPRCYVCDQQTNGVFNPAKELIAKL 317

[Close]

BLAST of Cp4.1LG01g18010 vs. Swiss-Prot
Match: R113B_HUMAN (RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3)

HSP 1 Score: 196.1 bits (497), Expect = 7.4e-49
Identity = 120/318 (37.74%), Postives = 182/318 (57.23%), Query Frame = 1


Query: 9   QPEQVCSF-FKKPTKN--KNIRKRTVDEDEEDSKSSE----TSVLQNQKKAPKTDSKLYF 68
           Q +QVC+F FKKP +     +RKR   + E    SS      +V Q  + AP+      +
Sbjct: 13  QADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPPRVAPRPRGLHSW 72

Query: 69  SSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVL 128
                      E+  ES   +++   S +     D  ATA  E +T+       I  +  
Sbjct: 73  QKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMGATADFEQDTEKEHHTPTIL-KCS 132

Query: 129 KQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAH-GPLRASAHIRA 188
           ++ +EAL+G+      + +Y+G+++Y+ Y     ++ ++ +  +G A  GP+RA  H+RA
Sbjct: 133 QRVQEALRGREH----DHIYRGIHSYLRYLKP--KDTSMGNSSSGMARKGPIRAPGHLRA 192

Query: 189 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 248
           + R+DYQPDICKDYKETG+CG+GD+CKF+HDR DYK GW++E+E EE       +  +  
Sbjct: 193 TVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEE------GRYCICE 252

Query: 249 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 308
           D+  E  +      EE+ +PF CFICR+ F +PVVTKC+HYFCE CAL+H     +C++C
Sbjct: 253 DENHEVGS------EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 311

Query: 309 NQPTLGIFNTAHEIKKKM 319
           +QPT GIFN A E+  K+
Sbjct: 313 DQPTGGIFNPAKELMAKL 311

[Close]

BLAST of Cp4.1LG01g18010 vs. TrEMBL
Match: A0A0A0KFS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G382870 PE=4 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 8.5e-169
Identity = 297/321 (92.52%), Postives = 310/321 (96.57%), Query Frame = 1


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTG+ Q  EQVCSFF+KPTKNKNIRKRTVDEDEE+   +ETS L NQKKAPKT+SKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++ +NESNVE +KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKNSSSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED +EQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 322
           NQPTLGIFNTAHEI+K+MA+S
Sbjct: 301 NQPTLGIFNTAHEIRKRMAQS 321

[Close]

BLAST of Cp4.1LG01g18010 vs. TrEMBL
Match: A0A061EKN3_THECC (Zinc finger family protein OS=Theobroma cacao GN=TCM_020255 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 3.8e-145
Identity = 254/320 (79.38%), Postives = 286/320 (89.38%), Query Frame = 1


Query: 6   ENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLYFSSGP 65
           E QQ EQVC+FF+KPTK KNIRKRT++EDE++   +ETS+LQN KK  K D+KLYFS+GP
Sbjct: 20  EPQQSEQVCNFFRKPTKGKNIRKRTINEDEDEDSRNETSLLQNHKKTLKPDNKLYFSTGP 79

Query: 66  SKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAE 125
           SKS    ESN+ESDKPIFQFESSKEIQVH+DSRATATLETET+ ++DARAIRE+VLKQ+E
Sbjct: 80  SKSAAATESNIESDKPIFQFESSKEIQVHNDSRATATLETETEVTKDARAIREKVLKQSE 139

Query: 126 EALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFD 185
           E LKGK  SSGGEKLYKG++ YVD+KAGFRRE TI+SEKAGG+HGPLRASAHIR SARFD
Sbjct: 140 EVLKGKSTSSGGEKLYKGMHGYVDHKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFD 199

Query: 186 YQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDE 245
           YQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEKEWEE EKARKR LA+  DD D 
Sbjct: 200 YQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARKRNLALGGDDDDG 259

Query: 246 DAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTL 305
               QSD+D++D+LPFACFICR+PFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTL
Sbjct: 260 AGLNQSDDDDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTL 319

Query: 306 GIFNTAHEIKKKMAESNLNS 326
           GIFNTAHEI++KMAE  + S
Sbjct: 320 GIFNTAHEIRRKMAEEGMLS 339

[Close]

BLAST of Cp4.1LG01g18010 vs. TrEMBL
Match: D7UCN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01030 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 4.0e-142
Identity = 253/317 (79.81%), Postives = 280/317 (88.33%), Query Frame = 1


Query: 3   DTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLYFS 62
           DTGE QQ E VC+FF+KPTKNKNIRKRT DEDE +   + TSVL  QKK PK D+KLYFS
Sbjct: 14  DTGEKQQSEPVCNFFRKPTKNKNIRKRTHDEDENEDSKTGTSVLHQQKKPPKPDNKLYFS 73

Query: 63  SGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLK 122
           +G S+ +  +E N ES+ PIFQFESSKEIQV HDSRATATLETETDFSRDARAIRERVLK
Sbjct: 74  TGSSRKSTMDEPNKESE-PIFQFESSKEIQVQHDSRATATLETETDFSRDARAIRERVLK 133

Query: 123 QAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASA 182
           Q+++ALKGK KS   EKLYKG++ Y DYKAGFRRE T++SEKAGGAHGPLRASAHIRASA
Sbjct: 134 QSQDALKGKNKSD--EKLYKGIHGYTDYKAGFRREQTVASEKAGGAHGPLRASAHIRASA 193

Query: 183 RFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDD 242
           RFDYQPDICKDYKETGYCG+GDACKFMHDRGDYKSGWQ+EKEWEE EKARKR LAM  DD
Sbjct: 194 RFDYQPDICKDYKETGYCGFGDACKFMHDRGDYKSGWQMEKEWEEAEKARKRNLAMGGDD 253

Query: 243 GDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQ 302
            DE    QSDED++DALPFACFICR+PFVDPVVTKCKH+FCEHCAL+HH+KNKKCFVCNQ
Sbjct: 254 ADEGGGGQSDEDDDDALPFACFICRQPFVDPVVTKCKHFFCEHCALRHHSKNKKCFVCNQ 313

Query: 303 PTLGIFNTAHEIKKKMA 320
           PTLG+FNTAHEI+KKMA
Sbjct: 314 PTLGMFNTAHEIRKKMA 327

[Close]

BLAST of Cp4.1LG01g18010 vs. TrEMBL
Match: W9RK45_9ROSA (Zinc finger CCCH domain-containing protein 1 OS=Morus notabilis GN=L484_023027 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 8.8e-142
Identity = 246/321 (76.64%), Postives = 285/321 (88.79%), Query Frame = 1


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           M D+ E  Q EQVC+FF+KP+KNKNIRKRTV ED+++   +E++VL +QKKAPK D+KLY
Sbjct: 1   MADSDEKPQTEQVCNFFRKPSKNKNIRKRTVTEDDDEESKTESTVLHSQKKAPKPDNKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FS+GPSK++ + ESN  S+ P+FQFESSKEIQV HDSRATATLETET+FS+DARAIRERV
Sbjct: 61  FSTGPSKNSASAESNAASETPVFQFESSKEIQVQHDSRATATLETETEFSKDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LK A+ ALKGKGK++G EKLY G++ Y DYKAGFRRE T++SEKAGG+HGPLRASAHIRA
Sbjct: 121 LKNADAALKGKGKNTGDEKLYTGIHGYTDYKAGFRREQTVASEKAGGSHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           + RFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEKEWEE EK RKR LA+  
Sbjct: 181 TTRFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKVRKRNLALGG 240

Query: 241 DDGDEDAAEQS-DEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFV 300
            D DE  A+Q+ D+D++DALPFACFICR+PFVDPVVTKCKHYFCEHCALKHH+KNKKCFV
Sbjct: 241 ADSDEGGADQNDDDDDDDALPFACFICRQPFVDPVVTKCKHYFCEHCALKHHSKNKKCFV 300

Query: 301 CNQPTLGIFNTAHEIKKKMAE 321
           CN PTLGIFNTAHEI+KKMAE
Sbjct: 301 CNTPTLGIFNTAHEIRKKMAE 321

[Close]

BLAST of Cp4.1LG01g18010 vs. TrEMBL
Match: B9S849_RICCO (RING finger protein 113A, putative OS=Ricinus communis GN=RCOM_0693420 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 4.4e-141
Identity = 251/324 (77.47%), Postives = 286/324 (88.27%), Query Frame = 1


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKL 60
           M D+G+++QPE VC+FF+KP KNKNIRKRT+++DEED  S +E+S+L NQKKAPK D+KL
Sbjct: 1   MADSGQSEQPEPVCNFFRKPLKNKNIRKRTIEKDEEDDNSKTESSLLHNQKKAPKPDNKL 60

Query: 61  YFSSGPSKSNLTN-ESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRE 120
           YFS+GPSK++L+  ES VESD+P+FQFESSKEIQV HDSRATATLETET+FS+DARAIRE
Sbjct: 61  YFSTGPSKNSLSAAESVVESDRPVFQFESSKEIQVQHDSRATATLETETEFSKDARAIRE 120

Query: 121 RVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHI 180
           R LKQAEEALKGK  SSG  KLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHI
Sbjct: 121 RALKQAEEALKGKTLSSGDAKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHI 180

Query: 181 RASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 240
           R SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEKEW+E EK RKR LA+
Sbjct: 181 RVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKIRKRNLAL 240

Query: 241 KSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCF 300
              +G     E+ D+D+E  LPFACFICR+PFVDPV TKCKHYFCEHCALKHHAKNKKCF
Sbjct: 241 GELEGGTGENEEEDDDDEHELPFACFICRQPFVDPVTTKCKHYFCEHCALKHHAKNKKCF 300

Query: 301 VCNQPTLGIFNTAHEIKKKMAESN 323
           VCNQPTLGIFNTAHEI+K MAE +
Sbjct: 301 VCNQPTLGIFNTAHEIRKMMAEDH 324

[Close]

BLAST of Cp4.1LG01g18010 vs. TAIR10
Match: AT1G01350.1 (AT1G01350.1 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein)

HSP 1 Score: 478.0 bits (1229), Expect = 5.5e-135
Identity = 239/316 (75.63%), Postives = 271/316 (85.76%), Query Frame = 1


Query: 6   ENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKLYFSSG 65
           +  Q +QVC+FFKKPTK+KNIRKRT+D DEED  S SE+S+LQN KK  K DSKLYFSSG
Sbjct: 22  QETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSG 81

Query: 66  PSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQA 125
           PSKS+ T     E  + +F ++SSKEIQV +DS ATATLETETDF++DARAIRERVLK+A
Sbjct: 82  PSKSSTTTSGAPE--RSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKA 141

Query: 126 EEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARF 185
           +EALKG  K +  EKLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHIR SARF
Sbjct: 142 DEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARF 201

Query: 186 DYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGD 245
           DYQPDICKDYKETGYCGYGD+CKF+HDRGDYK GWQ+EKEWEE EK RKR  AM  +D D
Sbjct: 202 DYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDED 261

Query: 246 EDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPT 305
           ++A + SDED E+ALPFACFICREPFVDPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT
Sbjct: 262 DEADKDSDED-ENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPT 321

Query: 306 LGIFNTAHEIKKKMAE 321
           +GIFN AHEIKK+MAE
Sbjct: 322 MGIFNAAHEIKKRMAE 334

[Close]

BLAST of Cp4.1LG01g18010 vs. TAIR10
Match: AT5G06420.1 (AT5G06420.1 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein)

HSP 1 Score: 474.6 bits (1220), Expect = 6.0e-134
Identity = 235/319 (73.67%), Postives = 270/319 (84.64%), Query Frame = 1


Query: 3   DTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKLYF 62
           D   NQ+ +QVC+FFKKPTK+KNIRKRT+D DEED  S SE+S+LQN KK  K DS LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  SSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVL 122
           SSGPS       ++   ++P+F ++SSKEIQV +DS ATATLETETDF++DARAIRERVL
Sbjct: 117 SSGPS-----TRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVL 176

Query: 123 KQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRAS 182
           K+A+ ALKG  K +  EKLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHIR S
Sbjct: 177 KKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVS 236

Query: 183 ARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSD 242
           ARFDYQPDICKDYKETGYCGYGD+CKF+HDRGDYK GWQ+EKEWEE EK RKR  AM  +
Sbjct: 237 ARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVE 296

Query: 243 DGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCN 302
           D D++A + SDED E+ALPFACFICREPF+DPVVTKCKHYFCEHCALKHH KNKKCFVCN
Sbjct: 297 DDDDEADKDSDED-ENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCN 356

Query: 303 QPTLGIFNTAHEIKKKMAE 321
           QPT+GIFN AHEIKK+MAE
Sbjct: 357 QPTMGIFNAAHEIKKRMAE 369

[Close]

BLAST of Cp4.1LG01g18010 vs. TAIR10
Match: AT4G01023.1 (AT4G01023.1 RING/U-box superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-23
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 1


Query: 209 MHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDAAEQSDEDEEDALPFACFICRE 268
           + D        +LEK  ++++K   RKL        E     + E+++DALP AC IC+ 
Sbjct: 40  VEDEDSNNESSRLEKLEKKIKKETARKL--------ETDFVLTGEEDDDALPLACSICQN 99

Query: 269 PFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIKKKMAE 321
           PF+DPVVT C HYFC+ CALKHH +N  CFVCN+PTLG+F+TA EIK+++ E
Sbjct: 100 PFLDPVVTNCNHYFCDKCALKHHTENDTCFVCNEPTLGLFDTAVEIKERIEE 143

[Close]

BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: gi|449463408|ref|XP_004149426.1| (PREDICTED: zinc finger CCCH domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 601.3 bits (1549), Expect = 1.2e-168
Identity = 297/321 (92.52%), Postives = 310/321 (96.57%), Query Frame = 1


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTG+ Q  EQVCSFF+KPTKNKNIRKRTVDEDEE+   +ETS L NQKKAPKT+SKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++ +NESNVE +KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKNSSSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED +EQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 322
           NQPTLGIFNTAHEI+K+MA+S
Sbjct: 301 NQPTLGIFNTAHEIRKRMAQS 321

[Close]

BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: gi|659133482|ref|XP_008466746.1| (PREDICTED: zinc finger CCCH domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 599.7 bits (1545), Expect = 3.5e-168
Identity = 297/321 (92.52%), Postives = 310/321 (96.57%), Query Frame = 1


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTG+ Q  EQVCSFF+KPTKNKNIRKRTVDEDEE+   +ETS L NQKKAPKT+SKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++L+NESNVE +KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKNSLSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED++EQSDEDEE ALPFACFICREPFVDPVVTKC HYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDSSEQSDEDEEGALPFACFICREPFVDPVVTKCGHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 322
           NQPTLGIFNTAHEI+KKMA+S
Sbjct: 301 NQPTLGIFNTAHEIRKKMAQS 321

[Close]

BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: gi|590656389|ref|XP_007034257.1| (Zinc finger family protein [Theobroma cacao])

HSP 1 Score: 522.7 bits (1345), Expect = 5.5e-145
Identity = 254/320 (79.38%), Postives = 286/320 (89.38%), Query Frame = 1


Query: 6   ENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLYFSSGP 65
           E QQ EQVC+FF+KPTK KNIRKRT++EDE++   +ETS+LQN KK  K D+KLYFS+GP
Sbjct: 20  EPQQSEQVCNFFRKPTKGKNIRKRTINEDEDEDSRNETSLLQNHKKTLKPDNKLYFSTGP 79

Query: 66  SKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAE 125
           SKS    ESN+ESDKPIFQFESSKEIQVH+DSRATATLETET+ ++DARAIRE+VLKQ+E
Sbjct: 80  SKSAAATESNIESDKPIFQFESSKEIQVHNDSRATATLETETEVTKDARAIREKVLKQSE 139

Query: 126 EALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFD 185
           E LKGK  SSGGEKLYKG++ YVD+KAGFRRE TI+SEKAGG+HGPLRASAHIR SARFD
Sbjct: 140 EVLKGKSTSSGGEKLYKGMHGYVDHKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFD 199

Query: 186 YQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDE 245
           YQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEKEWEE EKARKR LA+  DD D 
Sbjct: 200 YQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARKRNLALGGDDDDG 259

Query: 246 DAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTL 305
               QSD+D++D+LPFACFICR+PFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTL
Sbjct: 260 AGLNQSDDDDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTL 319

Query: 306 GIFNTAHEIKKKMAESNLNS 326
           GIFNTAHEI++KMAE  + S
Sbjct: 320 GIFNTAHEIRRKMAEEGMLS 339

[Close]

BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: gi|1009142394|ref|XP_015888700.1| (PREDICTED: zinc finger CCCH domain-containing protein 1-like [Ziziphus jujuba])

HSP 1 Score: 513.8 bits (1322), Expect = 2.5e-142
Identity = 250/322 (77.64%), Postives = 287/322 (89.13%), Query Frame = 1


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           M D+    QPE VCSFF+KP+KNKNIRKRTV+E++++   +E++ L +Q+KAPK DSKLY
Sbjct: 1   MADSDGKPQPE-VCSFFRKPSKNKNIRKRTVEEEDDEESKTESTFLHSQRKAPKPDSKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++   ESN  SD PIF+FESSKEIQV HDSRATATLETET+FS+DARAIRERV
Sbjct: 61  FSSGPSKASKPTESNAASDTPIFKFESSKEIQVQHDSRATATLETETEFSKDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           L+QAE+ LKGKGK +G EK+YKG++ Y DYKAGFRREHT++SEKAGGAHGPLRASAHIRA
Sbjct: 121 LRQAEDGLKGKGKGTGDEKVYKGIHGYTDYKAGFRREHTVASEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           S+RFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYK+GWQLEKEWEE EKAR+R  A+  
Sbjct: 181 SSRFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKAGWQLEKEWEEKEKARRRNSALGG 240

Query: 241 DDGDEDAAEQS---DEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKC 300
           DD DE AAEQS   D+D++D LPFACFICREPFVDPVVTKCKHYFCEHCALKHH+KNKKC
Sbjct: 241 DDSDEAAAEQSDDDDDDDDDELPFACFICREPFVDPVVTKCKHYFCEHCALKHHSKNKKC 300

Query: 301 FVCNQPTLGIFNTAHEIKKKMA 320
           +VCNQPTLGIFNTAHEI+KKMA
Sbjct: 301 YVCNQPTLGIFNTAHEIRKKMA 321

[Close]

BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: gi|359489721|ref|XP_002277034.2| (PREDICTED: zinc finger CCCH domain-containing protein 1 [Vitis vinifera])

HSP 1 Score: 512.7 bits (1319), Expect = 5.7e-142
Identity = 253/317 (79.81%), Postives = 280/317 (88.33%), Query Frame = 1


Query: 3   DTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLYFS 62
           DTGE QQ E VC+FF+KPTKNKNIRKRT DEDE +   + TSVL  QKK PK D+KLYFS
Sbjct: 14  DTGEKQQSEPVCNFFRKPTKNKNIRKRTHDEDENEDSKTGTSVLHQQKKPPKPDNKLYFS 73

Query: 63  SGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLK 122
           +G S+ +  +E N ES+ PIFQFESSKEIQV HDSRATATLETETDFSRDARAIRERVLK
Sbjct: 74  TGSSRKSTMDEPNKESE-PIFQFESSKEIQVQHDSRATATLETETDFSRDARAIRERVLK 133

Query: 123 QAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASA 182
           Q+++ALKGK KS   EKLYKG++ Y DYKAGFRRE T++SEKAGGAHGPLRASAHIRASA
Sbjct: 134 QSQDALKGKNKSD--EKLYKGIHGYTDYKAGFRREQTVASEKAGGAHGPLRASAHIRASA 193

Query: 183 RFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDD 242
           RFDYQPDICKDYKETGYCG+GDACKFMHDRGDYKSGWQ+EKEWEE EKARKR LAM  DD
Sbjct: 194 RFDYQPDICKDYKETGYCGFGDACKFMHDRGDYKSGWQMEKEWEEAEKARKRNLAMGGDD 253

Query: 243 GDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQ 302
            DE    QSDED++DALPFACFICR+PFVDPVVTKCKH+FCEHCAL+HH+KNKKCFVCNQ
Sbjct: 254 ADEGGGGQSDEDDDDALPFACFICRQPFVDPVVTKCKHFFCEHCALRHHSKNKKCFVCNQ 313

Query: 303 PTLGIFNTAHEIKKKMA 320
           PTLG+FNTAHEI+KKMA
Sbjct: 314 PTLGMFNTAHEIRKKMA 327

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g18010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H1_ARATH	9.7e-134	75.63	Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g0135...	[more]
C3H51_ARATH	1.1e-132	73.67	Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana GN=At5g064...	[more]
C3H15_ORYSJ	5.3e-116	67.51	Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica GN...	[more]
R113A_BOVIN	2.5e-49	39.38	RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1	[more]
R113B_HUMAN	7.4e-49	37.74	RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3	[more]

BLAST of Cp4.1LG01g18010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFS0_CUCSA	8.5e-169	92.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G382870 PE=4 SV=1	[more]
A0A061EKN3_THECC	3.8e-145	79.38	Zinc finger family protein OS=Theobroma cacao GN=TCM_020255 PE=4 SV=1	[more]
D7UCN8_VITVI	4.0e-142	79.81	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g01030 PE=4 SV=...	[more]
W9RK45_9ROSA	8.8e-142	76.64	Zinc finger CCCH domain-containing protein 1 OS=Morus notabilis GN=L484_023027 P...	[more]
B9S849_RICCO	4.4e-141	77.47	RING finger protein 113A, putative OS=Ricinus communis GN=RCOM_0693420 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g18010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01350.1	5.5e-135	75.63	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.1	6.0e-134	73.67	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT4G01023.1	1.1e-23	47.32	RING/U-box superfamily protein	[more]

BLAST of Cp4.1LG01g18010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463408\|ref\|XP_004149426.1\|	1.2e-168	92.52	PREDICTED: zinc finger CCCH domain-containing protein 1 [Cucumis sativus]	[more]
gi\|659133482\|ref\|XP_008466746.1\|	3.5e-168	92.52	PREDICTED: zinc finger CCCH domain-containing protein 1 [Cucumis melo]	[more]
gi\|590656389\|ref\|XP_007034257.1\|	5.5e-145	79.38	Zinc finger family protein [Theobroma cacao]	[more]
gi\|1009142394\|ref\|XP_015888700.1\|	2.5e-142	77.64	PREDICTED: zinc finger CCCH domain-containing protein 1-like [Ziziphus jujuba]	[more]
gi\|359489721\|ref\|XP_002277034.2\|	5.7e-142	79.81	PREDICTED: zinc finger CCCH domain-containing protein 1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017907	Znf_RING_CS
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g18010.1	Cp4.1LG01g18010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 186..216 score: 5.0
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 186..211 score: 7.3
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 185..212 score: 1.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 185..213 score: 14
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 184..216 score: 4.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 263..300 score: 8.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 263..301 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 246..315 score: 1.3
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 278..287 scor
None	No IPR available	PANTHER	PTHR12930	ZINC FINGER PROTEIN 183	coord: 1..320 score: 1.6E
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 262..303 score: 9.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 262..306 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g18010	CmaCh04G020650	Cucurbita maxima (Rimu)	cmacpeB735
Cp4.1LG01g18010	CmoCh04G021620	Cucurbita moschata (Rifu)	cmocpeB688
Cp4.1LG01g18010	Cla007961	Watermelon (97103) v1	cpewmB398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g18010	Cucumber (Chinese Long) v3	cpecucB0547
Cp4.1LG01g18010	Cucumber (Chinese Long) v3	cpecucB0562
Cp4.1LG01g18010	Wax gourd	cpewgoB0565
Cp4.1LG01g18010	Cucurbita pepo (Zucchini)	cpecpeB042
Cp4.1LG01g18010	Cucurbita pepo (Zucchini)	cpecpeB201
Cp4.1LG01g18010	Cucurbita pepo (Zucchini)	cpecpeB378
Cp4.1LG01g18010	Cucumber (Gy14) v1	cgycpeB0752
Cp4.1LG01g18010	Cucurbita maxima (Rimu)	cmacpeB310
Cp4.1LG01g18010	Cucurbita maxima (Rimu)	cmacpeB321
Cp4.1LG01g18010	Cucurbita maxima (Rimu)	cmacpeB430
Cp4.1LG01g18010	Cucurbita maxima (Rimu)	cmacpeB728
Cp4.1LG01g18010	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g18010	Cucurbita moschata (Rifu)	cmocpeB273
Cp4.1LG01g18010	Cucurbita moschata (Rifu)	cmocpeB283
Cp4.1LG01g18010	Cucurbita moschata (Rifu)	cmocpeB394
Cp4.1LG01g18010	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g18010	Cucurbita moschata (Rifu)	cmocpeB681
Cp4.1LG01g18010	Wild cucumber (PI 183967)	cpecpiB455
Cp4.1LG01g18010	Cucumber (Chinese Long) v2	cpecuB456
Cp4.1LG01g18010	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g18010	Bottle gourd (USVL1VR-Ls)	cpelsiB357
Cp4.1LG01g18010	Watermelon (Charleston Gray)	cpewcgB370
Cp4.1LG01g18010	Watermelon (Charleston Gray)	cpewcgB390
Cp4.1LG01g18010	Watermelon (97103) v1	cpewmB429
Cp4.1LG01g18010	Watermelon (97103) v1	cpewmB440
Cp4.1LG01g18010	Melon (DHL92) v3.5.1	cpemeB373
Cp4.1LG01g18010	Melon (DHL92) v3.5.1	cpemeB399
Cp4.1LG01g18010	Melon (DHL92) v3.6.1	cpemedB431
Cp4.1LG01g18010	Melon (DHL92) v3.6.1	cpemedB464
Cp4.1LG01g18010	Silver-seed gourd	carcpeB1181
Cp4.1LG01g18010	Silver-seed gourd	carcpeB1467