Cp4.1LG01g17710 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g17710
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor CYCLOIDEA
LocationCp4.1LG01 : 12981618 .. 12982493 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCCAAACATGTTTGGTTCTAACAACACCACCCAAACTAATCACATTGCTTTACAACATCAGGAACAACATGAGCAGAATTTGTATCTACATTTCCCACATCCTTTTCTCGACCACGATGACCTGTTTTTAACCCACATTTTGTCGTCCCAACAGTTCTTCATTGGTGCGGATTGTTGGGGAGAACGAGAACGAGAACAAGAACGAGAACAAGAACGAGAACAAGAACAAGAACAAGAACAAGACCAAGACCATGATCAGACCAAGCAAAATTCGGAGAAGCCAAGGATTGAAGTAGTGAAGCAGAAGAAGAAGAAATGCAGTGGTAATAGAAAAAATGGAAGCTCCGGAAAGAAAACAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAGGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCGAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCAACACCATCGAATGGCTTCTCTCTAACTCAACCTCCGCAATTAAGGATCTCCAACACAGCTTAGCCAACAACAGCAACAACAACAGCGGGCATAGGTATGGTGGCAGTGTGTGTTGTGGGTCGACCGAGGGCGTGTCAGAGATGATTAGGGGTAATAATGGTGGTGGCGGAGCTGCAAAAGAAGGTGCTTTTATGGGCACTCCCAAACACAAACAGAGCAGGGCATTACGTAGGGTGGGCAGAGAGTCGAGGGATAGGGCAAGAGCTAGGGCAAGGCAAAGAACAATGTTGAAAAAAACAGAACAACCCATTTCCAATCTCCAAGATGTAAGCTCAGTTGTTGATGATCTCTCGGATTTTGCATCAATCCGAAGTATTTTGTGA

mRNA sequence

ATGAACCCAAACATGTTTGGTTCTAACAACACCACCCAAACTAATCACATTGCTTTACAACATCAGGAACAACATGAGCAGAATTTGTATCTACATTTCCCACATCCTTTTCTCGACCACGATGACCTGTTTTTAACCCACATTTTGTCGTCCCAACAGTTCTTCATTGGTGCGGATTGTTGGGGAGAACGAGAACGAGAACAAGAACGAGAACAAGAACGAGAACAAGAACAAGAACAAGAACAAGACCAAGACCATGATCAGACCAAGCAAAATTCGGAGAAGCCAAGGATTGAAGTAGTGAAGCAGAAGAAGAAGAAATGCAGTGGTAATAGAAAAAATGGAAGCTCCGGAAAGAAAACAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAGGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCGAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCAACACCATCGAATGGCTTCTCTCTAACTCAACCTCCGCAATTAAGGATCTCCAACACAGCTTAGCCAACAACAGCAACAACAACAGCGGGCATAGGTATGGTGGCAGTGTGTGTTGTGGGTCGACCGAGGGCGTGTCAGAGATGATTAGGGGTAATAATGGTGGTGGCGGAGCTGCAAAAGAAGGTGCTTTTATGGGCACTCCCAAACACAAACAGAGCAGGGCATTACGTAGGGTGGGCAGAGAGTCGAGGGATAGGGCAAGAGCTAGGGCAAGGCAAAGAACAATGTTGAAAAAAACAGAACAACCCATTTCCAATCTCCAAGATGTAAGCTCAGTTGTTGATGATCTCTCGGATTTTGCATCAATCCGAAGTATTTTGTGA

Coding sequence (CDS)

ATGAACCCAAACATGTTTGGTTCTAACAACACCACCCAAACTAATCACATTGCTTTACAACATCAGGAACAACATGAGCAGAATTTGTATCTACATTTCCCACATCCTTTTCTCGACCACGATGACCTGTTTTTAACCCACATTTTGTCGTCCCAACAGTTCTTCATTGGTGCGGATTGTTGGGGAGAACGAGAACGAGAACAAGAACGAGAACAAGAACGAGAACAAGAACAAGAACAAGAACAAGACCAAGACCATGATCAGACCAAGCAAAATTCGGAGAAGCCAAGGATTGAAGTAGTGAAGCAGAAGAAGAAGAAATGCAGTGGTAATAGAAAAAATGGAAGCTCCGGAAAGAAAACAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAGGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCGAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCAACACCATCGAATGGCTTCTCTCTAACTCAACCTCCGCAATTAAGGATCTCCAACACAGCTTAGCCAACAACAGCAACAACAACAGCGGGCATAGGTATGGTGGCAGTGTGTGTTGTGGGTCGACCGAGGGCGTGTCAGAGATGATTAGGGGTAATAATGGTGGTGGCGGAGCTGCAAAAGAAGGTGCTTTTATGGGCACTCCCAAACACAAACAGAGCAGGGCATTACGTAGGGTGGGCAGAGAGTCGAGGGATAGGGCAAGAGCTAGGGCAAGGCAAAGAACAATGTTGAAAAAAACAGAACAACCCATTTCCAATCTCCAAGATGTAAGCTCAGTTGTTGATGATCTCTCGGATTTTGCATCAATCCGAAGTATTTTGTGA

Protein sequence

MNPNMFGSNNTTQTNHIALQHQEQHEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQEREQEREQEQEQEQDQDHDQTKQNSEKPRIEVVKQKKKKCSGNRKNGSSGKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVCCGSTEGVSEMIRGNNGGGGAAKEGAFMGTPKHKQSRALRRVGRESRDRARARARQRTMLKKTEQPISNLQDVSSVVDDLSDFASIRSIL
Homology
[Close]
BLAST of Cp4.1LG01g17710 vs. Swiss-Prot
Match: CYCLD_ANTML (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.3e-21
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 1 

Query: 119 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 178
           K+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK S T++WLL+ S +AI
Sbjct: 75  KQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAI 134

Query: 179 KDLQHSLANNSNNNSGHRYGGSVCCGSTEGVSEMIRGNNGGGGAAKEGAFMGTPKHKQSR 238
           K+L  S +  SN++S       V    +E V++  +G           +     K K++ 
Sbjct: 135 KELVQSKSTKSNSSSPCDDCEEVVSVDSENVTDHSKGK----------SLKANNKCKEAM 194

Query: 239 -ALRRVGRESRDRARARARQRTMLK 263
            + +   +ESR +ARARAR+RT  K
Sbjct: 195 DSHQAAAKESRAKARARARERTKEK 209

[Close]
BLAST of Cp4.1LG01g17710 vs. Swiss-Prot
Match: CYCLD_ANTMA (Transcription factor CYCLOIDEA OS=Antirrhinum majus GN=CYC PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.3e-21
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 1 

Query: 119 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 178
           K+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK S T++WLL+ S +AI
Sbjct: 83  KQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAI 142

Query: 179 KDLQHSLANNSNNNSGHRYGGSVCCGSTEGVSEMIRGNNGGGGAAKEGAFMGTPKHKQSR 238
           K+L  S +  SN++S       V    +E V++  +G           +     K K++ 
Sbjct: 143 KELVQSKSTKSNSSSPCDDCEEVVSVDSENVTDHSKGK----------SLKANNKCKEAM 202

Query: 239 -ALRRVGRESRDRARARARQRTMLK 263
            + +   +ESR +ARARAR+RT  K
Sbjct: 203 DSHQAAAKESRAKARARARERTKEK 217

[Close]
BLAST of Cp4.1LG01g17710 vs. Swiss-Prot
Match: CYCLD_ANTMH (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum GN=CYC PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-21
Identity = 67/145 (46.21%), Postives = 93/145 (64.14%), Query Frame = 1 

Query: 119 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 178
           K+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK S T++WLL+ S +A+
Sbjct: 75  KQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAV 134

Query: 179 KDLQHSLANNSNNNSGHRYGGSVCCGSTEGVSEMIRGNNGGGGAAKEGAFMGTPKHKQSR 238
           K+L  S +  SN++S       V    +E V++  +G           +     K K++ 
Sbjct: 135 KELVQSKSTKSNSSSPCDDCEEVVSVESENVTDHSKGK----------SLKANNKCKEAM 194

Query: 239 -ALRRVGRESRDRARARARQRTMLK 263
            + +   +ESR +ARARAR+RT  K
Sbjct: 195 DSHQAAAKESRAKARARARERTKEK 209

[Close]
BLAST of Cp4.1LG01g17710 vs. Swiss-Prot
Match: TCP12_ARATH (Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-20
Identity = 78/180 (43.33%), Postives = 95/180 (52.78%), Query Frame = 1 

Query: 97  RIEVVKQKKKKCSGNRKNGSSGKKTGKK-DRHSKIYTAQGPRDRRMRLSLQIARKFFDLQ 156
           ++E+ K+ +K   G+       ++T KK DRHSKI TAQGPRDRRMRLSLQIARKFFDLQ
Sbjct: 85  KLELKKKNEKCVDGSTSQEVQWRRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQ 144

Query: 157 DMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVCCGSTEGVSEMIRG 216
           DMLGFDKAS TIEWL S S ++IK L+                            E +  
Sbjct: 145 DMLGFDKASKTIEWLFSKSKTSIKQLK----------------------------ERVAA 204

Query: 217 NNGGGGAAKEGAFMGTPKHKQSRALRRVG-------------RESRDRARARARQRTMLK 263
           + GGG   K+       K K      RV              +ESR+RAR RAR+RTM K
Sbjct: 205 SEGGG---KDEHLQVDEKEKDETLKLRVSKRRTKTMESSFKTKESRERARKRARERTMAK 233

[Close]
BLAST of Cp4.1LG01g17710 vs. Swiss-Prot
Match: DICH_ANTMA (Transcription factor DICHOTOMA OS=Antirrhinum majus GN=DICH PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-18
Identity = 69/150 (46.00%), Postives = 87/150 (58.00%), Query Frame = 1 

Query: 114 NGSSGKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSN 173
           N  + K T KKDRHSKI   QGPRDRR+RLS+ IARKFFDLQ+MLGFDK S T++WLL+ 
Sbjct: 78  NTLAKKHTPKKDRHSKINRPQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTK 137

Query: 174 STSAIKDLQHSLANNSN-NNSGHRYGGSVCCGSTEGVSEMIRGNNGGGGAAKEGAFMGTP 233
           S  AIK+L  S ++ SN +NS       V       +         G    K    + + 
Sbjct: 138 SKEAIKELVQSKSSKSNISNSPSECDQEVLSADLPYI---------GSSKGKAAVGLNSN 197

Query: 234 KHKQSRALRRVGRESRDRARARARQRTMLK 263
           K K  R    + +ESR +ARARAR+RT  K
Sbjct: 198 KCKGGRDAVDLAKESRAKARARARERTKEK 218

[Close]
BLAST of Cp4.1LG01g17710 vs. TrEMBL
Match: A0A0A0KRR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577450 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.7e-39
Identity = 142/296 (47.97%), Postives = 171/296 (57.77%), Query Frame = 1 

Query: 15  NHIALQHQEQ------HEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQ 74
           +H   QHQE       ++ + + +FPHPFLD DDLFL+H LS QQ F             
Sbjct: 3   DHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFF------------ 62

Query: 75  EREQEREQEQEQEQDQDHDQTKQNSEKPRIEVVKQKKKKC--SGNRKNGS-SGKKTGKKD 134
                      +++DQ  D+T +         +K+KKK C  S +RKNGS S K+ GKKD
Sbjct: 63  -----------EQRDQQLDETTKK--------MKKKKKLCGSSSSRKNGSNSTKRRGKKD 122

Query: 135 RHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSL 194
           RHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKAS TIEWLL NS SAIKDL+ + 
Sbjct: 123 RHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAY 182

Query: 195 ANNSNNNSGHRYGGSVCCGSTEGVSEMIRGNNGGGGAA----------KEGAFMGTPKHK 254
               +N+            S+E VSE I  NNG    A          ++ AF G  K K
Sbjct: 183 FFKYSNSG----------QSSEVVSE-INDNNGVFNVAASNLYQEQDQEDVAFTGGFKDK 242

Query: 255 -QSRALRRVGRESRDRARARARQRTMLKKTEQPISNL-QDVSSVVDDLSDFASIRS 290
            +SR LR V RE+RDRARARARQRT+LK T  P   +   +S   D LS   +I S
Sbjct: 243 IKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSSISQHFDHLSGNNNISS 256

[Close]
BLAST of Cp4.1LG01g17710 vs. TrEMBL
Match: A7XAF1_POPNI (Teosinte-branched-like protein (Fragment) OS=Populus nigra GN=TB1 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 109/267 (40.82%), Postives = 142/267 (53.18%), Query Frame = 1 

Query: 23  EQHEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQEREQEREQEQEQEQ 82
           E   Q    HFP PFLD DDL +  +LS QQ           ++ QE E+          
Sbjct: 30  ESCSQTFLQHFPDPFLDVDDLLVGELLSQQQ-----------QQHQEEEEVLGSNTALAV 89

Query: 83  DQDHDQTKQNSEKPRIEVVKQKKKKCSGNRKNGSSGKKTGKKDRHSKIYTAQGPRDRRMR 142
           +    QT   +     ++  +KK+      K     ++TGK DRHSKI+TAQGPRDRRMR
Sbjct: 90  EAHDPQTIPTASNEETKINNKKKRSNVDTSKQPIRQRRTGK-DRHSKIHTAQGPRDRRMR 149

Query: 143 LSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVC 202
           LSLQI+RKFFDLQDMLGFDKAS TIEWL + S + IK+L  S+       S    G SVC
Sbjct: 150 LSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSVPGGRRRCSICADGKSVC 209

Query: 203 CGSTEGVSEMIRG------NNGG--GGAAKEGAFMGTPKHKQSRALRR-----VGRESRD 262
              +   SE++ G       NG   G  AK  + +  PK K+S+ + +     V R+SR+
Sbjct: 210 ---STPESEVVSGIKLTPETNGDKRGTKAKNDSLVSNPKEKRSKKVHKPVFNLVDRDSRE 269

Query: 263 RARARARQRTMLKKTEQPISNLQDVSS 277
           +ARARAR+RT  +   Q I    D SS
Sbjct: 270 KARARARERTRERMKNQGIDTSSDRSS 281

[Close]
BLAST of Cp4.1LG01g17710 vs. TrEMBL
Match: A7XAE5_POPBA (Teosinte-branched-like protein (Fragment) OS=Populus balsamifera GN=TB1 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 109/267 (40.82%), Postives = 142/267 (53.18%), Query Frame = 1 

Query: 23  EQHEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQEREQEREQEQEQEQ 82
           E   Q    HFP PFLD DDL +  +LS QQ           ++ QE E+          
Sbjct: 30  ESCSQTFLQHFPDPFLDVDDLLVGELLSQQQ-----------QQHQEEEEVLGSNTALAV 89

Query: 83  DQDHDQTKQNSEKPRIEVVKQKKKKCSGNRKNGSSGKKTGKKDRHSKIYTAQGPRDRRMR 142
           +    QT   +     ++  +KK+      K     ++TGK DRHSKI+TAQGPRDRRMR
Sbjct: 90  EAHDPQTIPTASNEETKINNKKKRSNVDTSKQPIRQRRTGK-DRHSKIHTAQGPRDRRMR 149

Query: 143 LSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVC 202
           LSLQI+RKFFDLQDMLGFDKAS TIEWL + S + IK+L  S+       S    G SVC
Sbjct: 150 LSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSVPGGRRRCSICADGKSVC 209

Query: 203 CGSTEGVSEMIRG------NNGG--GGAAKEGAFMGTPKHKQSRALRR-----VGRESRD 262
              +   SE++ G       NG   G  AK  + +  PK K+S+ + +     V R+SR+
Sbjct: 210 ---STPESEVVSGIKLTPETNGDKRGTKAKNDSLVSNPKEKRSKKVHKPVFNLVDRDSRE 269

Query: 263 RARARARQRTMLKKTEQPISNLQDVSS 277
           +ARARAR+RT  +   Q I    D SS
Sbjct: 270 KARARARERTRERMKNQGIDTSSDRSS 281

[Close]
BLAST of Cp4.1LG01g17710 vs. TrEMBL
Match: A7XAF2_POPTR (Teosinte-branched-like protein (Fragment) OS=Populus trichocarpa GN=TB1 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 109/267 (40.82%), Postives = 141/267 (52.81%), Query Frame = 1 

Query: 23  EQHEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQEREQEREQEQEQEQ 82
           E   Q    HFP PFLD DDL +  +LS QQ           +  QE E+          
Sbjct: 30  ESCSQTFLQHFPDPFLDVDDLLVGELLSQQQ-----------QEHQEEEEVLGSNTALAV 89

Query: 83  DQDHDQTKQNSEKPRIEVVKQKKKKCSGNRKNGSSGKKTGKKDRHSKIYTAQGPRDRRMR 142
           +    QT   +     ++  +KK+      K     ++TGK DRHSKI+TAQGPRDRRMR
Sbjct: 90  EAHDPQTIPTASNEETKINNKKKRSNVDTSKQPIRQRRTGK-DRHSKIHTAQGPRDRRMR 149

Query: 143 LSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVC 202
           LSLQI+RKFFDLQDMLGFDKAS TIEWL + S + IK+L  S+       S    G SVC
Sbjct: 150 LSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSVPGGRRRCSICADGKSVC 209

Query: 203 CGSTEGVSEMIRG------NNGG--GGAAKEGAFMGTPKHKQSRALRR-----VGRESRD 262
              +   SE++ G       NG   G  AK  + +  PK K+S+ + +     V R+SR+
Sbjct: 210 ---STPESEVVSGIKLTPETNGDKRGTKAKNDSLVSNPKEKRSKKVHKPVFNLVDRDSRE 269

Query: 263 RARARARQRTMLKKTEQPISNLQDVSS 277
           +ARARAR+RT  +   Q I    D SS
Sbjct: 270 KARARARERTRERMKNQGIDTSSDRSS 281

[Close]
BLAST of Cp4.1LG01g17710 vs. TrEMBL
Match: Q9FUE9_POPTR (Teosinte-branched-like protein OS=Populus trichocarpa GN=TB1 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 109/267 (40.82%), Postives = 141/267 (52.81%), Query Frame = 1 

Query: 23  EQHEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQEREQEREQEQEQEQ 82
           E   Q    HFP PFLD DDL +  +LS QQ           +  QE E+          
Sbjct: 30  ESCSQTFLQHFPDPFLDVDDLLVGELLSQQQ-----------QEHQEEEEVLGSNTALAV 89

Query: 83  DQDHDQTKQNSEKPRIEVVKQKKKKCSGNRKNGSSGKKTGKKDRHSKIYTAQGPRDRRMR 142
           +    QT   +     ++  +KK+      K     ++TGK DRHSKI+TAQGPRDRRMR
Sbjct: 90  EAHDPQTIPTASNEETKINNKKKRSNVDTSKQPIRQRRTGK-DRHSKIHTAQGPRDRRMR 149

Query: 143 LSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVC 202
           LSLQI+RKFFDLQDMLGFDKAS TIEWL + S + IK+L  S+       S    G SVC
Sbjct: 150 LSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSVPGGRRRCSICADGKSVC 209

Query: 203 CGSTEGVSEMIRG------NNGG--GGAAKEGAFMGTPKHKQSRALRR-----VGRESRD 262
              +   SE++ G       NG   G  AK  + +  PK K+S+ + +     V R+SR+
Sbjct: 210 ---STPESEVVSGIKLTPETNGDKRGTKAKNDSLVSNPKEKRSKKVHKPVFNLVDRDSRE 269

Query: 263 RARARARQRTMLKKTEQPISNLQDVSS 277
           +ARARAR+RT  +   Q I    D SS
Sbjct: 270 KARARARERTRERMKNQGIDTSSDRSS 281

[Close]
BLAST of Cp4.1LG01g17710 vs. TAIR10
Match: AT1G68800.1 (AT1G68800.1 TCP domain protein 12)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-21
Identity = 78/180 (43.33%), Postives = 95/180 (52.78%), Query Frame = 1 

Query: 97  RIEVVKQKKKKCSGNRKNGSSGKKTGKK-DRHSKIYTAQGPRDRRMRLSLQIARKFFDLQ 156
           ++E+ K+ +K   G+       ++T KK DRHSKI TAQGPRDRRMRLSLQIARKFFDLQ
Sbjct: 85  KLELKKKNEKCVDGSTSQEVQWRRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQ 144

Query: 157 DMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVCCGSTEGVSEMIRG 216
           DMLGFDKAS TIEWL S S ++IK L+                            E +  
Sbjct: 145 DMLGFDKASKTIEWLFSKSKTSIKQLK----------------------------ERVAA 204

Query: 217 NNGGGGAAKEGAFMGTPKHKQSRALRRVG-------------RESRDRARARARQRTMLK 263
           + GGG   K+       K K      RV              +ESR+RAR RAR+RTM K
Sbjct: 205 SEGGG---KDEHLQVDEKEKDETLKLRVSKRRTKTMESSFKTKESRERARKRARERTMAK 233

[Close]
BLAST of Cp4.1LG01g17710 vs. TAIR10
Match: AT1G67260.1 (AT1G67260.1 TCP family transcription factor )

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-16
Identity = 64/152 (42.11%), Postives = 87/152 (57.24%), Query Frame = 1 

Query: 119 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 178
           KK  KKDRHSKI TAQG RDRR+RLS+ IAR+FFDLQDMLGFDKAS T++WLL  S  AI
Sbjct: 83  KKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAI 142

Query: 179 KDLQHSLANNSNNNSGHRYGGSVCCGSTE-----GVSEMIRGNNGGGGAAK---EGAFMG 238
           K++  +   N+++      GG V     +     G    + G + G G  +   E    G
Sbjct: 143 KEVVQAKNLNNDDEDFGNIGGDVEQEEEKEEDDNGDKSFVYGLSPGYGEEEVVCEATKAG 202

Query: 239 TPKHK-QSRALRRVGRESRDRARARARQRTML 262
             K K + R +   G  ++ R +A+ R + M+
Sbjct: 203 IRKKKSELRNISSKGLGAKARGKAKERTKEMM 234

[Close]
BLAST of Cp4.1LG01g17710 vs. TAIR10
Match: AT3G18550.1 (AT3G18550.1 TCP family transcription factor )

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-15
Identity = 70/207 (33.82%), Postives = 104/207 (50.24%), Query Frame = 1 

Query: 98  IEVVKQKKKKCSGNRKNGSSGKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDM 157
           I +++  ++  +         KK  + DRHSKI TA+G RDRRMRLSL +A++ F LQDM
Sbjct: 123 INLIEDSQRISTSQDPKMKKAKKPSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDM 182

Query: 158 LGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVCCGSTEGVSEMI---- 217
           LGFDKAS T+EWLL+ +   I  +  +L+++   +SG         GS +  S++     
Sbjct: 183 LGFDKASKTVEWLLTQAKPEIIKIATTLSHHGCFSSGDESHIRPVLGSMDTSSDLCELAS 242

Query: 218 ------RGNNGG-----GGAAKEGAFMGTPKHKQSRA--LRRVGRESRDRARARARQRTM 277
                 RG+N       G      +  G  K  + R   L+++ +E R +AR RA+ RTM
Sbjct: 243 MWTVDDRGSNTNTTETRGNKVDGRSMRGKRKRPEPRTPILKKLSKEERAKARERAKGRTM 302

Query: 278 LKKTEQPISNLQDVSSVVDDLSDFASI 288
            K   +     Q V  V +D  D   I
Sbjct: 303 EKMMMKMKGRSQLVKVVEEDAHDHGEI 329

[Close]
BLAST of Cp4.1LG01g17710 vs. TAIR10
Match: AT1G53230.1 (AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 78.2 bits (191), Expect = 9.4e-15
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 113 KNGSSGKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLS 172
           + G   + TG+KDRHSK+ TA+GPRDRR+RLS   A +F+D+QD LGFD+ S  ++WL++
Sbjct: 39  QGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIT 98

Query: 173 NSTSAIKDL 182
            + SAI DL
Sbjct: 99  KAKSAIDDL 107

[Close]
BLAST of Cp4.1LG01g17710 vs. TAIR10
Match: AT2G31070.1 (AT2G31070.1 TCP domain protein 10)

HSP 1 Score: 75.5 bits (184), Expect = 6.1e-14
Identity = 32/64 (50.00%), Postives = 50/64 (78.12%), Query Frame = 1 

Query: 119 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 178
           + TG+KDRHSK++T++GPRDRR+RLS   A +F+D+QD LG+D+ S  ++WL+  + +AI
Sbjct: 25  RATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAI 84

Query: 179 KDLQ 183
             L+
Sbjct: 85  DKLE 88

[Close]
BLAST of Cp4.1LG01g17710 vs. NCBI nr
Match: gi|778708622|ref|XP_011656248.1| (PREDICTED: transcription factor TCP12 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 6.8e-39
Identity = 142/296 (47.97%), Postives = 171/296 (57.77%), Query Frame = 1 

Query: 15  NHIALQHQEQ------HEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQ 74
           +H   QHQE       ++ + + +FPHPFLD DDLFL+H LS QQ F             
Sbjct: 3   DHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFF------------ 62

Query: 75  EREQEREQEQEQEQDQDHDQTKQNSEKPRIEVVKQKKKKC--SGNRKNGS-SGKKTGKKD 134
                      +++DQ  D+T +         +K+KKK C  S +RKNGS S K+ GKKD
Sbjct: 63  -----------EQRDQQLDETTKK--------MKKKKKLCGSSSSRKNGSNSTKRRGKKD 122

Query: 135 RHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSL 194
           RHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKAS TIEWLL NS SAIKDL+ + 
Sbjct: 123 RHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAY 182

Query: 195 ANNSNNNSGHRYGGSVCCGSTEGVSEMIRGNNGGGGAA----------KEGAFMGTPKHK 254
               +N+            S+E VSE I  NNG    A          ++ AF G  K K
Sbjct: 183 FFKYSNSG----------QSSEVVSE-INDNNGVFNVAASNLYQEQDQEDVAFTGGFKDK 242

Query: 255 -QSRALRRVGRESRDRARARARQRTMLKKTEQPISNL-QDVSSVVDDLSDFASIRS 290
            +SR LR V RE+RDRARARARQRT+LK T  P   +   +S   D LS   +I S
Sbjct: 243 IKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSSISQHFDHLSGNNNISS 256

[Close]
BLAST of Cp4.1LG01g17710 vs. NCBI nr
Match: gi|659074615|ref|XP_008437699.1| (PREDICTED: transcription factor CYCLOIDEA [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 95/158 (60.13%), Postives = 105/158 (66.46%), Query Frame = 1 

Query: 122 GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDL 181
           GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKAS TIEWLL NS SAIKDL
Sbjct: 56  GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDL 115

Query: 182 QHSLANNSNNNSGHRYGGSVCCGSTEGVSEMIRGNNGGGGAA-----------KEGAFMG 241
           + +     +N+            S+E VSE I  NNG    A           ++ AF G
Sbjct: 116 KQAYFFKYSNSG----------QSSEVVSE-INDNNGVVNVAASNHLDQQQDQEDVAFTG 175

Query: 242 TPKHK-QSRALRRVGRESRDRARARARQRTMLKKTEQP 268
             K K +SR LR   RE+RDRARARARQRT+LK T  P
Sbjct: 176 GFKDKIKSRTLRTGSREARDRARARARQRTLLKNTLLP 202

[Close]
BLAST of Cp4.1LG01g17710 vs. NCBI nr
Match: gi|731370664|ref|XP_010647995.1| (PREDICTED: transcription factor PCF5 [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 3.3e-25
Identity = 105/252 (41.67%), Postives = 142/252 (56.35%), Query Frame = 1 

Query: 23  EQHEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQEREQEREQEQEQEQ 82
           E    + +LHFP  FLD  +L  TH+L  +Q  +      + ++ +       +    ++
Sbjct: 23  EDQPPSSFLHFPAAFLDDYELIPTHLLPQRQLMLVDRSGAQGDQSEINAAASNKTTSVDK 82

Query: 83  DQDHDQTKQNSEKPRIEVVKQKKKKCSGNRKNGSSGKKTGKKDRHSKIYTAQGPRDRRMR 142
           +   D      ++P +EV   KK   S + K     K+TGKKDRHSKIYTAQGPRDRRMR
Sbjct: 83  ETSSDVVADQQQEP-LEVPPMKK---SDSAKKSVPRKRTGKKDRHSKIYTAQGPRDRRMR 142

Query: 143 LSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVC 202
           LSLQIARKFFDLQD+LGFDKAS TIEWL + S +AIK+L  +L    +   G   GG+  
Sbjct: 143 LSLQIARKFFDLQDILGFDKASKTIEWLFTKSKAAIKELTGNLPQIKHIGGGGTSGGTSA 202

Query: 203 CGSTE--GVSEM--IRGNNGGGGAAKEG--AFMGTPKHKQSR------ALRRVGRESRDR 262
              +E  G S +  I  N    G    G  + + TPK K++R      AL  + +ESR++
Sbjct: 203 SSISESKGTSRLKEIAHNGEPKGIVTNGESSVLTTPKEKKNRKPRSKSALNPLAKESREK 262

[Close]
BLAST of Cp4.1LG01g17710 vs. NCBI nr
Match: gi|148536319|gb|ABQ85712.1| (teosinte-branched-like protein, partial [Populus nigra])

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 109/267 (40.82%), Postives = 142/267 (53.18%), Query Frame = 1 

Query: 23  EQHEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQEREQEREQEQEQEQ 82
           E   Q    HFP PFLD DDL +  +LS QQ           ++ QE E+          
Sbjct: 30  ESCSQTFLQHFPDPFLDVDDLLVGELLSQQQ-----------QQHQEEEEVLGSNTALAV 89

Query: 83  DQDHDQTKQNSEKPRIEVVKQKKKKCSGNRKNGSSGKKTGKKDRHSKIYTAQGPRDRRMR 142
           +    QT   +     ++  +KK+      K     ++TGK DRHSKI+TAQGPRDRRMR
Sbjct: 90  EAHDPQTIPTASNEETKINNKKKRSNVDTSKQPIRQRRTGK-DRHSKIHTAQGPRDRRMR 149

Query: 143 LSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVC 202
           LSLQI+RKFFDLQDMLGFDKAS TIEWL + S + IK+L  S+       S    G SVC
Sbjct: 150 LSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSVPGGRRRCSICADGKSVC 209

Query: 203 CGSTEGVSEMIRG------NNGG--GGAAKEGAFMGTPKHKQSRALRR-----VGRESRD 262
              +   SE++ G       NG   G  AK  + +  PK K+S+ + +     V R+SR+
Sbjct: 210 ---STPESEVVSGIKLTPETNGDKRGTKAKNDSLVSNPKEKRSKKVHKPVFNLVDRDSRE 269

Query: 263 RARARARQRTMLKKTEQPISNLQDVSS 277
           +ARARAR+RT  +   Q I    D SS
Sbjct: 270 KARARARERTRERMKNQGIDTSSDRSS 281

[Close]
BLAST of Cp4.1LG01g17710 vs. NCBI nr
Match: gi|148536313|gb|ABQ85709.1| (teosinte-branched-like protein, partial [Populus balsamifera])

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 109/267 (40.82%), Postives = 142/267 (53.18%), Query Frame = 1 

Query: 23  EQHEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEREREQEREQEREQEQEQEQ 82
           E   Q    HFP PFLD DDL +  +LS QQ           ++ QE E+          
Sbjct: 30  ESCSQTFLQHFPDPFLDVDDLLVGELLSQQQ-----------QQHQEEEEVLGSNTALAV 89

Query: 83  DQDHDQTKQNSEKPRIEVVKQKKKKCSGNRKNGSSGKKTGKKDRHSKIYTAQGPRDRRMR 142
           +    QT   +     ++  +KK+      K     ++TGK DRHSKI+TAQGPRDRRMR
Sbjct: 90  EAHDPQTIPTASNEETKINNKKKRSNVDTSKQPIRQRRTGK-DRHSKIHTAQGPRDRRMR 149

Query: 143 LSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSNNNSGHRYGGSVC 202
           LSLQI+RKFFDLQDMLGFDKAS TIEWL + S + IK+L  S+       S    G SVC
Sbjct: 150 LSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSVPGGRRRCSICADGKSVC 209

Query: 203 CGSTEGVSEMIRG------NNGG--GGAAKEGAFMGTPKHKQSRALRR-----VGRESRD 262
              +   SE++ G       NG   G  AK  + +  PK K+S+ + +     V R+SR+
Sbjct: 210 ---STPESEVVSGIKLTPETNGDKRGTKAKNDSLVSNPKEKRSKKVHKPVFNLVDRDSRE 269

Query: 263 RARARARQRTMLKKTEQPISNLQDVSS 277
           +ARARAR+RT  +   Q I    D SS
Sbjct: 270 KARARARERTRERMKNQGIDTSSDRSS 281

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g17710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYCLD_ANTML6.3e-2146.90Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum ... [more]
CYCLD_ANTMA6.3e-2146.90Transcription factor CYCLOIDEA OS=Antirrhinum majus GN=CYC PE=1 SV=1[more]
CYCLD_ANTMH8.3e-2146.21Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigeru... [more]
TCP12_ARATH3.1e-2043.33Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1[more]
DICH_ANTMA1.0e-1846.00Transcription factor DICHOTOMA OS=Antirrhinum majus GN=DICH PE=2 SV=1[more]
BLAST of Cp4.1LG01g17710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRR2_CUCSA4.7e-3947.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577450 PE=4 SV=1[more]
A7XAF1_POPNI1.5e-2440.82Teosinte-branched-like protein (Fragment) OS=Populus nigra GN=TB1 PE=4 SV=1[more]
A7XAE5_POPBA1.5e-2440.82Teosinte-branched-like protein (Fragment) OS=Populus balsamifera GN=TB1 PE=4 SV=... [more]
A7XAF2_POPTR1.9e-2440.82Teosinte-branched-like protein (Fragment) OS=Populus trichocarpa GN=TB1 PE=4 SV=... [more]
Q9FUE9_POPTR1.9e-2440.82Teosinte-branched-like protein OS=Populus trichocarpa GN=TB1 PE=4 SV=1[more]
BLAST of Cp4.1LG01g17710 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68800.11.8e-2143.33 TCP domain protein 12[more]
AT1G67260.12.2e-1642.11 TCP family transcription factor [more]
AT3G18550.11.9e-1533.82 TCP family transcription factor [more]
AT1G53230.19.4e-1553.62 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3[more]
AT2G31070.16.1e-1450.00 TCP domain protein 10[more]
BLAST of Cp4.1LG01g17710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708622|ref|XP_011656248.1|6.8e-3947.97PREDICTED: transcription factor TCP12 [Cucumis sativus][more]
gi|659074615|ref|XP_008437699.1|1.8e-2860.13PREDICTED: transcription factor CYCLOIDEA [Cucumis melo][more]
gi|731370664|ref|XP_010647995.1|3.3e-2541.67PREDICTED: transcription factor PCF5 [Vitis vinifera][more]
gi|148536319|gb|ABQ85712.1|2.1e-2440.82teosinte-branched-like protein, partial [Populus nigra][more]
gi|148536313|gb|ABQ85709.1|2.1e-2440.82teosinte-branched-like protein, partial [Populus balsamifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017888CYC/TB1_R_domain
IPR017887TF_TCP_subgr
IPR005333Transcription_factor_TCP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:2000032 regulation of secondary shoot formation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17710.1Cp4.1LG01g17710.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005333Transcription factor, TCPPFAMPF03634TCPcoord: 121..265
score: 6.4
IPR017887Transcription factor TCP subgroupPROFILEPS51369TCPcoord: 123..181
score: 35
IPR017888CYC/TB1, R domainPROFILEPS51370Rcoord: 245..262
score: 9
NoneNo IPR availableunknownCoilCoilcoord: 62..85
scor
NoneNo IPR availablePANTHERPTHR31072FAMILY NOT NAMEDcoord: 16..262
score: 1.3
NoneNo IPR availablePANTHERPTHR31072:SF22TRANSCRIPTION FACTOR TCP12coord: 16..262
score: 1.3