Carg27160 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27160
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cycloidea-like protein group 1A
Location	Cucurbita_argyrosperma_scaffold_151 : 146181 .. 147423 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTTCTAACAACAACACCCAAACTAATCACATTGCTTTACAACATCAGGAACAACATGACCACAATCTGTATCTACATTTCCCACATCCTTTTGTCGACCAGGATGACCTGTTTTTAACCCACATTTTGTCCTCCCAACAGTTCTTCATTGGTGCGGATTGTTGGGGAGAACAAGAACAAGAACAAGAACAAGAACAACATCATGATCGGACAAAGCAAAATTCGGAGAAGCCTAGGATTGAGGTAGTGAAGAAGAAGAAGAAGAAATGCAGTGGTAATAGAAAAAATGGAAGCTCCAGAAAGAAAACAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAGGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCGAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCGAGCAACACCATCGAATGGCTTCTCTCTAACTCAACCTCCGCAATTAAGGATCTCCAACACAGCTTAGCCAACAACAGCGGGCATAGGTATGGCAGTGTGTGTTGTGGGTCGACCGAGGCCGTGTCAGAGATGATTAGGGATAATAATGGTGGTGGCGGATCTGCAAAAGAAGCTGCTTTTATGGCCACTCCCAAACACAAACAGAGCAGGGCATTACGTAGGGTGGGCAGAGAGTCGAGGGATAGGGCAAGAGCTAGGGCAAGGCAAAGAACAATGTTGAAAAAAATAAAACAACCCATTTCCAATCTCCAAGATTTGAGCTCAGTTGTTGCCATTTCTGATGATCTCTGGGATTTTGCATCAATCCAAAGTATTTTGTGAGGTAATCATAATTCCCCATCGCAAAACCCTGATTCTTCTTCAACACTGGCTTGCCCTAATCTTAAATAAATAACCCTAATTCAAAGGGTGTGATATCATTATCAGATCTACCTTCTTTCATTCTTGTTCATCAAATTCTCTACTACCGTTTCATAAATTGTGTACAAAGCTGTTGTATTCTATAAAATTCAAAGTTTATCTGAAAAGTATGATGCAGCATATGGCTTGCGGTGTCTGGGCTTTGATGTATGTTCGTTCTACTTCAATTGCAGCAATGGGAAAATACTCAAATCTTAGCCCTCACTGTGTGGGAAACTGAGACATAGGGTTGATACTTAATTTTCATTGCAATCAAGCCTTATACTCATGTGGGAACTCCAATTTTAAATTTTCATTTCTTCATTAATTAGGATTAGTATAA

mRNA sequence

ATGTTTGGTTCTAACAACAACACCCAAACTAATCACATTGCTTTACAACATCAGGAACAACATGACCACAATCTGTATCTACATTTCCCACATCCTTTTGTCGACCAGGATGACCTGTTTTTAACCCACATTTTGTCCTCCCAACAGTTCTTCATTGGTGCGGATTGTTGGGGAGAACAAGAACAAGAACAAGAACAAGAACAACATCATGATCGGACAAAGCAAAATTCGGAGAAGCCTAGGATTGAGGTAGTGAAGAAGAAGAAGAAGAAATGCAGTGGTAATAGAAAAAATGGAAGCTCCAGAAAGAAAACAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAGGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCGAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCGAGCAACACCATCGAATGGCTTCTCTCTAACTCAACCTCCGCAATTAAGGATCTCCAACACAGCTTAGCCAACAACAGCGGGCATAGGTATGGCAGTGTGTGTTGTGGGTCGACCGAGGCCGTGTCAGAGATGATTAGGGATAATAATGGTGGTGGCGGATCTGCAAAAGAAGCTGCTTTTATGGCCACTCCCAAACACAAACAGAGCAGGGCATTACGTAGGGTGGGCAGAGAGTCGAGGGATAGGGCAAGAGCTAGGGCAAGGCAAAGAACAATGTTGAAAAAAATAAAACAACCCATTTCCAATCTCCAAGATTTGAGCTCAGTTGTTGCCATTTCTGATGATCTCTGGGATTTTGCATCAATCCAAAGATTAGTATAA

Coding sequence (CDS)

ATGTTTGGTTCTAACAACAACACCCAAACTAATCACATTGCTTTACAACATCAGGAACAACATGACCACAATCTGTATCTACATTTCCCACATCCTTTTGTCGACCAGGATGACCTGTTTTTAACCCACATTTTGTCCTCCCAACAGTTCTTCATTGGTGCGGATTGTTGGGGAGAACAAGAACAAGAACAAGAACAAGAACAACATCATGATCGGACAAAGCAAAATTCGGAGAAGCCTAGGATTGAGGTAGTGAAGAAGAAGAAGAAGAAATGCAGTGGTAATAGAAAAAATGGAAGCTCCAGAAAGAAAACAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAGGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCGAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCGAGCAACACCATCGAATGGCTTCTCTCTAACTCAACCTCCGCAATTAAGGATCTCCAACACAGCTTAGCCAACAACAGCGGGCATAGGTATGGCAGTGTGTGTTGTGGGTCGACCGAGGCCGTGTCAGAGATGATTAGGGATAATAATGGTGGTGGCGGATCTGCAAAAGAAGCTGCTTTTATGGCCACTCCCAAACACAAACAGAGCAGGGCATTACGTAGGGTGGGCAGAGAGTCGAGGGATAGGGCAAGAGCTAGGGCAAGGCAAAGAACAATGTTGAAAAAAATAAAACAACCCATTTCCAATCTCCAAGATTTGAGCTCAGTTGTTGCCATTTCTGATGATCTCTGGGATTTTGCATCAATCCAAAGATTAGTATAA

Protein sequence

MFGSNNNTQTNHIALQHQEQHDHNLYLHFPHPFVDQDDLFLTHILSSQQFFIGADCWGEQEQEQEQEQHHDRTKQNSEKPRIEVVKKKKKKCSGNRKNGSSRKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSGHRYGSVCCGSTEAVSEMIRDNNGGGGSAKEAAFMATPKHKQSRALRRVGRESRDRARARARQRTMLKKIKQPISNLQDLSSVVAISDDLWDFASIQRLV

Homology

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BLAST of Carg27160 vs. NCBI nr
Match: XP_022974210.1 (transcription factor CYCLOIDEA-like [Cucurbita maxima])

HSP 1 Score: 386.0 bits (990), Expect = 1.1e-103
Identity = 250/273 (91.58%), Postives = 256/273 (93.77%), Query Frame = 0


Query: 1   MFGSNNNTQTNHIALQHQEQHDHNLYLHFPHPFVDQDDLFLTHILSSQQFFIGADCWGEQ 60
           MFGSNNNTQTNHIALQHQEQH+ NLYLHFPHPF+D DDLFLTHILSSQQFFIGADCWGEQ
Sbjct: 6   MFGSNNNTQTNHIALQHQEQHEENLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEQ 65

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRKKTGKKDRHSKIYTAQGP 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SSRKKTGKKDRHSKIYTAQGP
Sbjct: 66  ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNGSSRKKTGKKDRHSKIYTAQGP 125

Query: 121 RDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSGHRYGSV 180
           RDRR+RLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSGHRYGSV
Sbjct: 126 RDRRIRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSGHRYGSV 185

Query: 181 CCGSTEAVSEMIRDNXXXXXXAKEAAFMATPKHKQSRALRRVGRESRDRXXXXXXXXTML 240
           CCGSTEAVSEMIRD XXXXXX    AFMATPKHKQSRALRRVGRESRDRXXXXXXXXTML
Sbjct: 186 CCGSTEAVSEMIRDXXXXXXXXXXXAFMATPKHKQSRALRRVGRESRDRXXXXXXXXTML 245

Query: 241 KKIKQPISNLQDLSSVVAISDDLWDFASIQRLV 274
           KK KQPISNLQD+SSVVAISDDLWDFASIQ ++
Sbjct: 246 KKTKQPISNLQDVSSVVAISDDLWDFASIQSIL 274

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BLAST of Carg27160 vs. NCBI nr
Match: XP_022930117.1 (transcription factor TCP12-like [Cucurbita moschata])

HSP 1 Score: 376.7 bits (966), Expect = 6.6e-101
Identity = 247/273 (90.48%), Postives = 253/273 (92.67%), Query Frame = 0


Query: 1   MFGSNNNTQTNHIALQHQEQHDHNLYLHFPHPFVDQDDLFLTHILSSQQFFIGADCWGEQ 60
           MFGSNNNTQTNHIALQHQEQH+ NL+LHFPHPF+DQDDLFLTHILSSQ FFIGADCWGEQ
Sbjct: 5   MFGSNNNTQTNHIALQHQEQHERNLHLHFPHPFLDQDDLFLTHILSSQHFFIGADCWGEQ 64

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRKKTGKKDRHSKIYTAQGP 120
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     TGKKDRHSKIYTAQGP
Sbjct: 65  -----EQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKKDRHSKIYTAQGP 124

Query: 121 RDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSGHRYGSV 180
           RDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSGHRYGSV
Sbjct: 125 RDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSGHRYGSV 184

Query: 181 CCGSTEAVSEMIRDNXXXXXXAKEAAFMATPKHKQSRALRRVGRESRDRXXXXXXXXTML 240
           CCGSTEAVSEMIRD XXXXXX    AFMATPKHKQSRALRRVGRESRDRXXXXXXXXTML
Sbjct: 185 CCGSTEAVSEMIRDXXXXXXXXXXXAFMATPKHKQSRALRRVGRESRDRXXXXXXXXTML 244

Query: 241 KKIKQPISNLQDLSSVVAISDDLWDFASIQRLV 274
           KKIKQPISNLQD+SSVVAISDDLWDFASIQ ++
Sbjct: 245 KKIKQPISNLQDVSSVVAISDDLWDFASIQSIL 272

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BLAST of Carg27160 vs. NCBI nr
Match: XP_023534500.1 (transcription factor TCP18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 2.5e-79
Identity = 211/290 (72.76%), Postives = 219/290 (75.52%), Query Frame = 0


Query: 1   MFGSNNNTQTNHIALQHQEQHDHNLYLHFPHPFVDQDDLFLTHILSSQQFFIGADCWGEQ 60
           MFGSNN TQTNHIALQHQEQH+ NLYLHFPHPF+D DDLFLTHILSSQQFFIGADCWGE+
Sbjct: 5   MFGSNNTTQTNHIALQHQEQHEQNLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGER 64

Query: 61  ------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRKKTGKK 120
                       XXXXXXXXXXXXXXXXXXXX                   SS KKTGKK
Sbjct: 65  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIEVVKQKKKKCSGNRKNGSSGKKTGKK 124

Query: 121 DRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHS 180
           DRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHS
Sbjct: 125 DRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHS 184

Query: 181 LAN-----NSGHRYGSVCCGSTEAVSEMIRDNXXXXXXAKEAAFMATPKHKQSRALRRVG 240
           LAN                   E VS      XXXXXX KE AFM TPKHKQSRALRRVG
Sbjct: 185 LANXXXXXXXXXXXXXXXXXXXEGVSXXXXXXXXXXXXXKEGAFMGTPKHKQSRALRRVG 244

Query: 241 RESRDRXXXXXXXXTMLKKIKQPISNLQDLSSVVAISDDLWDFASIQRLV 274
           RESRDRXXXXXXX TMLKK +QPISNLQD+SSVV   DDL DFASI+ ++
Sbjct: 245 RESRDRXXXXXXXRTMLKKTEQPISNLQDVSSVV---DDLSDFASIRSIL 291

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BLAST of Carg27160 vs. NCBI nr
Match: XP_022969767.1 (transcription factor TCP12-like [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 4.5e-33
Identity = 155/262 (59.16%), Postives = 173/262 (66.03%), Query Frame = 0


Query: 18  QEQHDHNLYLHFPHPFVDQDDLFLTHILSSQQFFIGADCWGEQXXXXXXXXXXXXXXXXX 77
           QE  +++ YLHFPHPF+D DDLFLTH+LS              XXXXXXXXXXXXXXXXX
Sbjct: 3   QEHEENSSYLHFPHPFLD-DDLFLTHLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 78  XXXXXXXXXXXXXXXXXXXXXXSSRKKTG-----KKDRHSKIYTAQGPRDRRMRLSLQIA 137
           XXXXXXXXXXXXXXXXXXXXXX            KKDRHSKI TAQGPRDRRMRLSLQIA
Sbjct: 63  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKDRHSKICTAQGPRDRRMRLSLQIA 122

Query: 138 RKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSGHRYGSVCCGSTEAVSEMI 197
           RKFFDLQDMLGFDKAS TIEWLLS+S SAIK L+++  NNSG  +GS C GS+E VS+  
Sbjct: 123 RKFFDLQDMLGFDKASKTIEWLLSHSNSAIKALKNN-NNNSGVSHGSACSGSSEVVSKQ- 182

Query: 198 RDNXXXXXXAKEAAFMATPKHKQSRALRRVGRESRDRXXXXXXXXTMLKKIKQPIS---- 257
                          + TPKHK+ R L+ +GRES   XXXXXXXX        PIS    
Sbjct: 183 ----------DAGGSIGTPKHKKGRQLQTIGRESXXXXXXXXXXXXXXXXXXXPISISQH 242

Query: 258 -------NLQDLSSVVAISDDL 264
                  +L+D   V A SDDL
Sbjct: 243 YLNSDETHLEDCPKVFAFSDDL 251

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BLAST of Carg27160 vs. NCBI nr
Match: XP_022157606.1 (transcription factor DICHOTOMA-like [Momordica charantia])

HSP 1 Score: 151.0 bits (380), Expect = 5.9e-33
Identity = 92/134 (68.66%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 103 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 162
           +K GKKDRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTI+WLLS+S SAI
Sbjct: 109 RKIGKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIDWLLSHSNSAI 168

Query: 163 KDLQHSL----ANNSGHRYGS-VCCGSTEAVSEM-IRDNXXXXXXAKEAAFMATP----K 222
           K L+ SL     N+S + YGS V CGS+EAVSE+  RDN       KE+AFMATP    K
Sbjct: 169 KKLKDSLNLNNNNHSAYSYGSQVSCGSSEAVSELTTRDN--NVASGKESAFMATPTPSSK 228

Query: 223 HKQSRALRRVGRES 227
            K+ R LR V RES
Sbjct: 229 LKKGRQLRTVARES 240

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BLAST of Carg27160 vs. TAIR10
Match: AT1G68800.1 (TCP domain protein 12)

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-23
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 102 RKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSA 161
           R+   K+DRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDKAS TIEWL S S ++
Sbjct: 107 RRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTS 166

Query: 162 IKDLQHSLANNSG 175
           IK L+  +A + G
Sbjct: 167 IKQLKERVAASEG 179

[Close]

BLAST of Carg27160 vs. TAIR10
Match: AT1G67260.1 (TCP family transcription factor )

HSP 1 Score: 95.9 bits (237), Expect = 4.1e-20
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 103 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 162
           KK  KKDRHSKI TAQG RDRR+RLS+ IAR+FFDLQDMLGFDKAS T++WLL  S  AI
Sbjct: 83  KKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAI 142

Query: 163 KD-LQHSLANNSGHRYGSV 181
           K+ +Q    NN    +G++
Sbjct: 143 KEVVQAKNLNNDDEDFGNI 161

[Close]

BLAST of Carg27160 vs. TAIR10
Match: AT3G18550.1 (TCP family transcription factor )

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-16
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 103 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 162
           KK  + DRHSKI TA+G RDRRMRLSL +A++ F LQDMLGFDKAS T+EWLL+ +   I
Sbjct: 144 KKPSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEI 203

Query: 163 KDLQHSLANN 173
             +  +L+++
Sbjct: 204 IKIATTLSHH 213

[Close]

BLAST of Carg27160 vs. TAIR10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-15
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 103 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 162
           + TG+KDRHSK+ TA+GPRDRR+RLS   A +F+D+QD LGFD+ S  ++WL++ + SAI
Sbjct: 45  RSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAI 104

Query: 163 KDL 166
            DL
Sbjct: 105 DDL 107

[Close]

BLAST of Carg27160 vs. TAIR10
Match: AT2G31070.1 (TCP domain protein 10)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-14
Identity = 32/64 (50.00%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 103 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 162
           + TG+KDRHSK++T++GPRDRR+RLS   A +F+D+QD LG+D+ S  ++WL+  + +AI
Sbjct: 25  RATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAI 84

Query: 163 KDLQ 167
             L+
Sbjct: 85  DKLE 88

[Close]

BLAST of Carg27160 vs. Swiss-Prot
Match: sp|A0AQW4|TCP12_ARATH (Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.3e-22
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 102 RKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSA 161
           R+   K+DRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDKAS TIEWL S S ++
Sbjct: 107 RRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTS 166

Query: 162 IKDLQHSLANNSG 175
           IK L+  +A + G
Sbjct: 167 IKQLKERVAASEG 179

[Close]

BLAST of Carg27160 vs. Swiss-Prot
Match: sp|O49250|CYCLD_ANTMA (Transcription factor CYCLOIDEA OS=Antirrhinum majus OX=4151 GN=CYC PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.1e-20
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 103 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 162
           K+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK S T++WLL+ S +AI
Sbjct: 83  KQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAI 142

Query: 163 KDLQHSLANNSGHRYGSVCCGSTEAVS 190
           K+L  S +  S     S C    E VS
Sbjct: 143 KELVQSKSTKSNS--SSPCDDCEEVVS 167

[Close]

BLAST of Carg27160 vs. Swiss-Prot
Match: sp|Q9SBV6|CYCLD_ANTML (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum OX=102601 GN=CYC PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.1e-20
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 103 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 162
           K+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK S T++WLL+ S +AI
Sbjct: 75  KQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAI 134

Query: 163 KDLQHSLANNSGHRYGSVCCGSTEAVS 190
           K+L  S +  S     S C    E VS
Sbjct: 135 KELVQSKSTKSNS--SSPCDDCEEVVS 159

[Close]

BLAST of Carg27160 vs. Swiss-Prot
Match: sp|Q9SBV9|CYCLD_ANTMH (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum OX=102600 GN=CYC PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.7e-20
Identity = 52/87 (59.77%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 103 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 162
           K+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK S T++WLL+ S +A+
Sbjct: 75  KQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAV 134

Query: 163 KDLQHSLANNSGHRYGSVCCGSTEAVS 190
           K+L  S +  S     S C    E VS
Sbjct: 135 KELVQSKSTKSNS--SSPCDDCEEVVS 159

[Close]

BLAST of Carg27160 vs. Swiss-Prot
Match: sp|Q9FYG7|TCP1_ARATH (Transcription factor TCP1 OS=Arabidopsis thaliana OX=3702 GN=TCP1 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.4e-19
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 103 KKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAI 162
           KK  KKDRHSKI TAQG RDRR+RLS+ IAR+FFDLQDMLGFDKAS T++WLL  S  AI
Sbjct: 83  KKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAI 142

Query: 163 KD-LQHSLANNSGHRYGSV 181
           K+ +Q    NN    +G++
Sbjct: 143 KEVVQAKNLNNDDEDFGNI 161

[Close]

BLAST of Carg27160 vs. TrEMBL
Match: tr|A0A2N9J879|A0A2N9J879_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60531 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 85/209 (40.67%), Postives = 106/209 (50.72%), Query Frame = 0


Query: 18  QEQHDHNLYLHFPHPFVDQDDLFLTHILSSQQFFIGADCWGEQXXXXXXXXXXXXXXXXX 77
           QE+   + Y H   PF   DDLFL+H+LS QQ F+       Q                 
Sbjct: 18  QEEQPPSSYSHLQAPFFVDDDLFLSHLLSQQQLFVATTSSQAQ---TESSVEASNSKEID 77

Query: 78  XXXXXXXXXXXXXXXXXXXXXXSSRKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFD 137
                                 + RK++GKKDRHSKI TAQGPRDRRMRLSLQIARKFFD
Sbjct: 78  NKNLEAASPKKKSNGRSNSKPTNPRKRSGKKDRHSKICTAQGPRDRRMRLSLQIARKFFD 137

Query: 138 LQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLANNSGHRYGSVCCGSTEAVSEMIRDNXX 197
           LQDMLGFDKAS TIEWL + S +AIK+L  S++         V   ST + +        
Sbjct: 138 LQDMLGFDKASKTIEWLFTKSKTAIKELTESISQVK-QSCSHVAKSSTVSFTSESEVGSV 197

Query: 198 XXXXAKEAAFMATPKHKQSRALRRVGRES 227
               A +  F+   + K++R L RV R+S
Sbjct: 198 NVEVADDGEFVNLAREKKNRKLHRVARDS 222

[Close]

BLAST of Carg27160 vs. TrEMBL
Match: tr|A0A2I4EW99|A0A2I4EW99_9ROSI (transcription factor TCP12 OS=Juglans regia OX=51240 GN=LOC108993274 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 88/227 (38.77%), Postives = 113/227 (49.78%), Query Frame = 0


Query: 17  HQEQHDHNLYLHFPHPFVDQDDLFLTHILSSQQFFIGADCWGEQXXXXXXXXXXXXXXXX 76
           H+E+H  + Y H    F++ D+LFL+H LS Q+ F G+    E                 
Sbjct: 34  HEEEHPSS-YTHLSASFLEDDELFLSHFLSQQKLFFGSTSQAETENSVAASVKATNDKKE 93

Query: 77  XXXXXXXXXXXXXXXXXXXXXXXSS-----RKKTGKKDRHSKIYTAQGPRDRRMRLSLQI 136
                                   +     RK+TGKKDRHSKI TA GPRDRRMRLSLQI
Sbjct: 94  ASGNTVAEQMPSKKPLPNKKSRGGAKQTVPRKRTGKKDRHSKICTAHGPRDRRMRLSLQI 153

Query: 137 ARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSLAN-----NSGHRYGSVCCGSTE 196
           ARKFFDLQDMLGFDKAS TIEWL + S +AIK+L  S++      + G +  SV     E
Sbjct: 154 ARKFFDLQDMLGFDKASKTIEWLFTKSKTAIKELTESISQVKQSCSDGTKSVSV-TSDNE 213

Query: 197 AVSEMIR----DNXXXXXXAKEAAFMATPKHKQSRALRRVGRESRDR 230
            +SE +     D       A   +F    + K +R    V R+SRD+
Sbjct: 214 EISENVEIAGDDGDQGGFGADVESFNLMAREKTNRKSLIVARDSRDK 258

[Close]

BLAST of Carg27160 vs. TrEMBL
Match: tr|A0A0A0KRR2|A0A0A0KRR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577450 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 89/151 (58.94%), Postives = 100/151 (66.23%), Query Frame = 0


Query: 109 DRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHS 168
           DRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKAS TIEWLL NS SAIKDL+ +
Sbjct: 91  DRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQA 150

Query: 169 L---ANNSGHRYGSVCCGSTEAVSEMIRDNXXXXXXA---------KEAAFMATPKHK-Q 228
                +NSG         S+E VSE+  +N      A         ++ AF    K K +
Sbjct: 151 YFFKYSNSGQ--------SSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIK 210

Query: 229 SRALRRVGRESRDRXXXXXXXXTMLKKIKQP 247
           SR LR V RE+RD XXXXXXXXT+LK    P
Sbjct: 211 SRTLRTVAREARDXXXXXXXXXTLLKNTLLP 233

[Close]

BLAST of Carg27160 vs. TrEMBL
Match: tr|V4VET5|V4VET5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033382mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.7e-23
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 102 RKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSA 161
           RK+TGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQD LGFDKAS TIEWLLS S +A
Sbjct: 119 RKRTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDTLGFDKASKTIEWLLSKSKAA 178

Query: 162 IKDLQHSL 170
           IK+L  SL
Sbjct: 179 IKELTESL 186

[Close]

BLAST of Carg27160 vs. TrEMBL
Match: tr|A0A2H5P3V3|A0A2H5P3V3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_101670 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.7e-23
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 102 RKKTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSA 161
           RK+TGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQD LGFDKAS TIEWLLS S +A
Sbjct: 119 RKRTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDTLGFDKASKTIEWLLSKSKAA 178

Query: 162 IKDLQHSL 170
           IK+L  SL
Sbjct: 179 IKELTESL 186

The following BLAST results are available for this feature:

BLAST of Carg27160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974210.1	1.1e-103	91.58	transcription factor CYCLOIDEA-like [Cucurbita maxima]	[more]
XP_022930117.1	6.6e-101	90.48	transcription factor TCP12-like [Cucurbita moschata]	[more]
XP_023534500.1	2.5e-79	72.76	transcription factor TCP18-like [Cucurbita pepo subsp. pepo]	[more]
XP_022969767.1	4.5e-33	59.16	transcription factor TCP12-like [Cucurbita maxima]	[more]
XP_022157606.1	5.9e-33	68.66	transcription factor DICHOTOMA-like [Momordica charantia]	[more]

BLAST of Carg27160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68800.1	5.2e-23	72.60	TCP domain protein 12	[more]
AT1G67260.1	4.1e-20	63.29	TCP family transcription factor	[more]
AT3G18550.1	6.1e-16	57.14	TCP family transcription factor	[more]
AT1G53230.1	1.0e-15	57.14	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT2G31070.1	1.5e-14	50.00	TCP domain protein 10	[more]

BLAST of Carg27160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A0AQW4\|TCP12_ARATH	9.3e-22	72.60	Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1	[more]
sp\|O49250\|CYCLD_ANTMA	5.1e-20	60.92	Transcription factor CYCLOIDEA OS=Antirrhinum majus OX=4151 GN=CYC PE=1 SV=1	[more]
sp\|Q9SBV6\|CYCLD_ANTML	5.1e-20	60.92	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum ...	[more]
sp\|Q9SBV9\|CYCLD_ANTMH	6.7e-20	59.77	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigeru...	[more]
sp\|Q9FYG7\|TCP1_ARATH	7.4e-19	63.29	Transcription factor TCP1 OS=Arabidopsis thaliana OX=3702 GN=TCP1 PE=1 SV=1	[more]

BLAST of Carg27160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9J879\|A0A2N9J879_FAGSY	5.5e-27	40.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60531 PE=4 SV=1	[more]
tr\|A0A2I4EW99\|A0A2I4EW99_9ROSI	1.3e-25	38.77	transcription factor TCP12 OS=Juglans regia OX=51240 GN=LOC108993274 PE=4 SV=1	[more]
tr\|A0A0A0KRR2\|A0A0A0KRR2_CUCSA	8.7e-25	58.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577450 PE=4 SV=1	[more]
tr\|V4VET5\|V4VET5_9ROSI	3.7e-23	86.76	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033382mg PE=4 ...	[more]
tr\|A0A2H5P3V3\|A0A2H5P3V3_CITUN	3.7e-23	86.76	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_101670 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017888	CYC/TB1_R_domain
IPR017887	TF_TCP_subgr
IPR005333	Transcription_factor_TCP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27160-RA	Carg27160-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 105..243 e-value: 1.2E-38 score: 133.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..110
None	No IPR available	PANTHER	PTHR31072:SF22	TRANSCRIPTION FACTOR TCP12	coord: 16..248
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 16..248
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 107..165 score: 35.735
IPR017888	CYC/TB1, R domain	PROSITE	PS51370	R	coord: 224..241 score: 9.481

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27160	CmoCh04G021160	Cucurbita moschata (Rifu)	carcmoB0683
Carg27160	Cp4.1LG01g17710	Cucurbita pepo (Zucchini)	carcpeB0708

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None