Cp4.1LG01g17300 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g17300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG01 : 12058540 .. 12059994 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGGCAGAACATATGGTCTGCCGTTTTTTATGCAAAGAAATCAGAGATAGGCGTCTCTATTCTCTGGTTTTGATCTGTTCTCGTCATTTTTCATCACACACCATTCCCTTCCATTTCCATGGCCTCCCACGCTTTCTCTTCTCCTCCAATTCTCTCAAACTCCCTTCGTTACTCTCTCCCCATTACCTGAAAACCTTTCACTTCTCTCCACAATCCTTTCTTATGCAAACCCCTTCTCTTCTCTTACAATCATGCCAGGATCTTCGTCTTCTGAAGCAAATCCATGCCTATTTCATTCTCTCATCTGGGTTCGACACGGTTTTCATTGCCTCCAAGCTCATTCGTCTGTACGCCAAGTTCAACGACCTTCCCAGTGCTGTCTCTGTTCTCAACGCCTTCCCGCACACCGAACCCATGCTTTGGAATTCCATCATCAAGTCCCAATTTGACTCAGGTTTGTTCTTATCTGCCATTATGTTGTATAAAAACATGAGGGAGGTGGGAGTTGAGCATGATGGGTTCACGTTTCCGATTCTTAACCATGTCGTTATGTCGATTTGGGTTGATGTAGTCTATGCGGGAATGGTTCATTGTGTTGGAATTCGAATGGGGTTTGGTTCTGATTTGTATTTCTGTAATACCATGATGGAGGTTTATGCGAAATGTGAGTGTTTGGGTCATGCACGCAAAGTGTTTGATGAAATGCCTAATAGAGACTTGGTCTCTTGGACGTCCATGATTTCTGCATATGTTAATAGCGGTGATATTGTTTGTGCTTTGAATCTTTTTGAGGGAATGAGGAGGGTGTTGGAGCCGAATTCGGTGACCATGATGGCAATGCTGCAAGCTTGTTGTGTTACTGAGGATTTGGTTCTGGGAAGGCTGATTCAATGTCTTGTGGTTAAGAATGGTTTATTGTTTGATGTAGGTCTGCAGAATTGGTTCTTACGAATGTATAGTCGACTAGGTGGGGAAGATGAATTTGTATGTTTTTTCTCTGAAATTGATTGCAAGAATGTTGTTTCTTGGAATATTTTGATATCTTTTTACTCCTCCGTGGGGGATATTGTGAAAGCTGTTGATATCTTCAAACAAATCATGGGTGGTGAAGTTCCACTCATCATTGAGACATTAACCATACTTATATCAGCAACAAAGACATCTGAATCCATGTGTCTGATCCTAGGTGAAAATCTACACTCTCTGGCAATTAAAACTGGTCTCTATGATAGCATTCTGCGGACTTCATTGTTGGATATGTATGCCAAGTTTGGGGAGTTGGACAATTCAACTAGGCTATTTAATGAAATTCCTAATAGGAGCATCATTACTTGGGGGGCCATGATGTCTAGTTTTATTCAAAATGGACACTTTGATGAGGCAGTAGAGATCTTCAGCCAAATGCAAGCTGCTGGCTTGAAACCCAGCCTTGGAATTTTGAAACACTTAATTGA

mRNA sequence

TAAGGCAGAACATATGGTCTGCCGTTTTTTATGCAAAGAAATCAGAGATAGGCGTCTCTATTCTCTGGTTTTGATCTGTTCTCGTCATTTTTCATCACACACCATTCCCTTCCATTTCCATGGCCTCCCACGCTTTCTCTTCTCCTCCAATTCTCTCAAACTCCCTTCGTTACTCTCTCCCCATTACCTGAAAACCTTTCACTTCTCTCCACAATCCTTTCTTATGCAAACCCCTTCTCTTCTCTTACAATCATGCCAGGATCTTCGTCTTCTGAAGCAAATCCATGCCTATTTCATTCTCTCATCTGGGTTCGACACGGTTTTCATTGCCTCCAAGCTCATTCGTCTGTACGCCAAGTTCAACGACCTTCCCAGTGCTGTCTCTGTTCTCAACGCCTTCCCGCACACCGAACCCATGCTTTGGAATTCCATCATCAAGTCCCAATTTGACTCAGGTCTGCAGAATTGGTTCTTACGAATGTATAGTCGACTAGGTGGGGAAGATGAATTTGTATGTTTTTTCTCTGAAATTGATTGCAAGAATGTTGTTTCTTGGAATATTTTGATATCTTTTTACTCCTCCGTGGGGGATATTGTGAAAGCTGTTGATATCTTCAAACAAATCATGGGTGGTGAAGTTCCACTCATCATTGAGACATTAACCATACTTATATCAGCAACAAAGACATCTGAATCCATGTGTCTGATCCTAGGTGAAAATCTACACTCTCTGGCAATTAAAACTGGTCTCTATGATAGCATTCTGCGGACTTCATTGTTGGATATTAGAGATCTTCAGCCAAATGCAAGCTGCTGGCTTGAAACCCAGCCTTGGAATTTTGAAACACTTAATTGA

Coding sequence (CDS)

ATGGTCTGCCGTTTTTTATGCAAAGAAATCAGAGATAGGCGTCTCTATTCTCTGGTTTTGATCTGTTCTCGTCATTTTTCATCACACACCATTCCCTTCCATTTCCATGGCCTCCCACGCTTTCTCTTCTCCTCCAATTCTCTCAAACTCCCTTCGTTACTCTCTCCCCATTACCTGAAAACCTTTCACTTCTCTCCACAATCCTTTCTTATGCAAACCCCTTCTCTTCTCTTACAATCATGCCAGGATCTTCGTCTTCTGAAGCAAATCCATGCCTATTTCATTCTCTCATCTGGGTTCGACACGGTTTTCATTGCCTCCAAGCTCATTCGTCTGTACGCCAAGTTCAACGACCTTCCCAGTGCTGTCTCTGTTCTCAACGCCTTCCCGCACACCGAACCCATGCTTTGGAATTCCATCATCAAGTCCCAATTTGACTCAGGTCTGCAGAATTGGTTCTTACGAATGTATAGTCGACTAGGTGGGGAAGATGAATTTGTATGTTTTTTCTCTGAAATTGATTGCAAGAATGTTGTTTCTTGGAATATTTTGATATCTTTTTACTCCTCCGTGGGGGATATTGTGAAAGCTGTTGATATCTTCAAACAAATCATGGGTGGTGAAGTTCCACTCATCATTGAGACATTAACCATACTTATATCAGCAACAAAGACATCTGAATCCATGTGTCTGATCCTAGGTGAAAATCTACACTCTCTGGCAATTAAAACTGGTCTCTATGATAGCATTCTGCGGACTTCATTGTTGGATATTAGAGATCTTCAGCCAAATGCAAGCTGCTGGCTTGAAACCCAGCCTTGGAATTTTGAAACACTTAATTGA

Protein sequence

MVCRFLCKEIRDRRLYSLVLICSRHFSSHTIPFHFHGLPRFLFSSNSLKLPSLLSPHYLKTFHFSPQSFLMQTPSLLLQSCQDLRLLKQIHAYFILSSGFDTVFIASKLIRLYAKFNDLPSAVSVLNAFPHTEPMLWNSIIKSQFDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQIMGGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLDIRDLQPNASCWLETQPWNFETLN
Homology
[Close]
BLAST of Cp4.1LG01g17300 vs. Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 45/176 (25.57%), Postives = 82/176 (46.59%), Query Frame = 1 

Query: 84  LRLLKQIHAYFILSSGFDTVFIASKLIRLYAKFNDLPSAVSVLNAFPHTEPMLWNSIIKS 143
           L L KQ HA+ I+S    T F+ + L+++Y    D  SA  V +  P  + + WN +I  
Sbjct: 64  LELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMING 123

Query: 144 QFDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQ 203
                        YS+     +   FF+ +  ++VVSWN ++S Y   G+ +K++++F  
Sbjct: 124 -------------YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 183

Query: 204 IMGGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTGL-YDSILRTSLLDI 259
           +    +     T  I++      E     LG  +H + ++ G   D +  ++LLD+
Sbjct: 184 MGREGIEFDGRTFAIILKVCSFLEDTS--LGMQIHGIVVRVGCDTDVVAASALLDM 224

[Close]
BLAST of Cp4.1LG01g17300 vs. Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-08
Identity = 47/150 (31.33%), Postives = 84/150 (56.00%), Query Frame = 1 

Query: 118 DLPSAVSVLNAFPHTEPM-----LWNSIIKSQF--DSGLQNWFLRMYSRLGGEDEFVCFF 177
           DL +  SVL A  H   +     ++N ++K+ F  +S ++N  + +Y++ G        F
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVF 365

Query: 178 SEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQIMGGEVPLIIETLTILIS-ATKTSESM 237
           + ++CK+ VSWN +IS Y   GD+++A+ +FK +M  E      T  +LIS +T+ ++  
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLAD-- 425

Query: 238 CLILGENLHSLAIKTGL-YDSILRTSLLDI 259
            L  G+ LHS  IK+G+  D  +  +L+D+
Sbjct: 426 -LKFGKGLHSNGIKSGICIDLSVSNALIDM 452

[Close]
BLAST of Cp4.1LG01g17300 vs. Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-08
Identity = 34/114 (29.82%), Postives = 57/114 (50.00%), Query Frame = 1 

Query: 88  KQIHAYFILSSGFDTVFIASKLIRLYAKFNDLPSAVSVLNAFPHTEPMLWNSIIKSQFDS 147
           +QIH  FI S     VF+ + L+ +Y +      A  VL+  P  + + WNS++ +  + 
Sbjct: 160 RQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEK 219

Query: 148 GLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIF 202
           GL              DE    F E++ +NV SWN +IS Y++ G + +A ++F
Sbjct: 220 GLV-------------DEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVF 260

[Close]
BLAST of Cp4.1LG01g17300 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.9e-08
Identity = 48/166 (28.92%), Postives = 81/166 (48.80%), Query Frame = 1 

Query: 77  LLQSCQDLRLLK---QIHAYFILSSGFDT-VFIASKLIRLYAKFNDLPSAVSVLNAFPHT 136
           +L+SC   +  K   QIH + +L  G D  +++ + LI +Y +   L  A  V +  PH 
Sbjct: 140 VLKSCAKSKAFKEGQQIHGH-VLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 199

Query: 137 EPMLWNSIIKSQFDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVG 196
           + + + ++IK              Y+  G  +     F EI  K+VVSWN +IS Y+  G
Sbjct: 200 DVVSYTALIKG-------------YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETG 259

Query: 197 DIVKAVDIFKQIMGGEVPLIIETLTILISATKTSESMCLILGENLH 239
           +  +A+++FK +M   V     T+  ++SA   S S  + LG  +H
Sbjct: 260 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS--IELGRQVH 289

[Close]
BLAST of Cp4.1LG01g17300 vs. Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.6e-07
Identity = 48/173 (27.75%), Postives = 80/173 (46.24%), Query Frame = 1 

Query: 77  LLQSCQDLR---LLKQIHAYFILSSGFDTVFIASKLIRLYAKFNDLPSAVSVLNAFPHTE 136
           + +SC  L    L KQ+H +         V   + LI +Y KF+DL  A  V +     +
Sbjct: 115 MFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERD 174

Query: 137 PMLWNSIIKSQFDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGD 196
            + WNS++               Y+RLG   +    F  +  K +VSW  +IS Y+ +G 
Sbjct: 175 VISWNSLLSG-------------YARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGC 234

Query: 197 IVKAVDIFKQI-MGGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTG 246
            V+A+D F+++ + G  P  I  +++L S  +      L LG+ +H  A + G
Sbjct: 235 YVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGS---LELGKWIHLYAERRG 271

[Close]
BLAST of Cp4.1LG01g17300 vs. TrEMBL
Match: M5VVK0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002924mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1 

Query: 146 DSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQIM 205
           D  +QN   +MY++LG  D+   FF E+D ++VVSWNI ISFYS  GD+VK  D+F + M
Sbjct: 170 DGSVQNSIFKMYAKLGTVDQVEDFFGELDRRDVVSWNIRISFYSWRGDVVKVRDLFHE-M 229

Query: 206 GGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLD 258
            GEV    ETLT++ISA   ++   L  GE+LH LA K+GL D +L+TSLLD
Sbjct: 230 QGEVAPSNETLTLVISA--VTKHGILSQGESLHCLATKSGLCDDVLQTSLLD 278

[Close]
BLAST of Cp4.1LG01g17300 vs. TrEMBL
Match: A0A151UG03_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_048185 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 160 LGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQIMGGEVPL-IIETLTI 219
           +G  +E    FSE++ K+VVSWNILISFYSS GD  K   + K++ G +V L  IETLT+
Sbjct: 117 VGSAEEVELLFSELNMKDVVSWNILISFYSSEGDARKVAGLLKEMQGFKVHLWNIETLTL 176

Query: 220 LISATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLD 258
           +ISA   S S+C   GE +H L IKTG  D +L TSLLD
Sbjct: 177 VISAFAKSGSLC--EGEGVHGLVIKTGFCDDVLLTSLLD 213

[Close]
BLAST of Cp4.1LG01g17300 vs. TrEMBL
Match: F6HLP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05770 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 1 

Query: 136 LWNSIIKSQF--DSGLQNWFLRMYSRLGGEDEFV-CFFSEIDCKNVVSWNILISFYSSVG 195
           L + +IK  F  D  +QN  LRMY++ GG  E V  FFSEI+ ++++SWNILI+FYS  G
Sbjct: 31  LHSYVIKKGFMVDRSVQNSILRMYTKTGGSGEEVETFFSEIEERDIISWNILIAFYSFRG 90

Query: 196 DIVKAVDIFKQIMGGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTGLYDSILR 255
           DI +  + F + M  EV   IE+LT+++SA     +  L  G  LH  AIKTGL+D++L 
Sbjct: 91  DIAEVAERFNE-MRREVTSSIESLTLVVSAIANCAN--LSEGGMLHCSAIKTGLHDTVLM 150

Query: 256 TSLL 257
           T LL
Sbjct: 151 TCLL 151

[Close]
BLAST of Cp4.1LG01g17300 vs. TrEMBL
Match: A0A0S3SU84_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G334900 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.6e-14
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 1 

Query: 146 DSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQIM 205
           D  ++N  LRMY   GG  E    F E++ K+VVSWNILISFYSS GD  +   + K + 
Sbjct: 169 DWSVKNSVLRMYGSKGGTREVELLFGEVNMKDVVSWNILISFYSSEGDATRVAGLLKAMQ 228

Query: 206 GGEVPL-IIETLTILISATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLD 258
             EV +  IETLT++ SA   S S  L  GE +H L +KTG  D +  TSLLD
Sbjct: 229 SLEVHVWNIETLTLVTSAFAKSGS--LSEGEGVHCLVVKTGFSDDVWLTSLLD 279

[Close]
BLAST of Cp4.1LG01g17300 vs. TrEMBL
Match: A0A068V0Q3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040477001 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.6e-14
Identity = 64/183 (34.97%), Postives = 93/183 (50.82%), Query Frame = 1 

Query: 111 RLYAKFNDL--PSAVSVLNAFPHTEPM-----LWNSIIKSQF--DSGLQNWFLRMYSRLG 170
           RL+ K  +   P+AV++L        M     L   IIK+    D  ++N  L MYS + 
Sbjct: 99  RLFGKMQNEVEPNAVTMLGLLQGCPSMVEGRQLHGYIIKNGLLHDRSVENSLLNMYSHVD 158

Query: 171 GEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQIMGGEVPLIIETLTILIS 230
              +    F EID ++VV+WNI++S Y+  GDI + +  F+Q M GEV    ETLT+ +S
Sbjct: 159 SVSDAEILFGEIDKRDVVTWNIMLSLYTYKGDITRMIGCFRQ-MSGEVDPSCETLTVFVS 218

Query: 231 ATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLDI----RDLQPNASCWLETQPWNFE 281
               +E   L  G  +H LA+K GL+D  LR  LLD     R++  +A  + E    N  
Sbjct: 219 G--LAECGYLFEGRQIHCLALKKGLFDDKLRACLLDFYAKHREVDISAKLFQEVHYRNSI 278

[Close]
BLAST of Cp4.1LG01g17300 vs. TAIR10
Match: AT3G02330.1 (AT3G02330.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-10
Identity = 45/176 (25.57%), Postives = 82/176 (46.59%), Query Frame = 1 

Query: 84  LRLLKQIHAYFILSSGFDTVFIASKLIRLYAKFNDLPSAVSVLNAFPHTEPMLWNSIIKS 143
           L L KQ HA+ I+S    T F+ + L+++Y    D  SA  V +  P  + + WN +I  
Sbjct: 64  LELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMING 123

Query: 144 QFDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQ 203
                        YS+     +   FF+ +  ++VVSWN ++S Y   G+ +K++++F  
Sbjct: 124 -------------YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 183

Query: 204 IMGGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTGL-YDSILRTSLLDI 259
           +    +     T  I++      E     LG  +H + ++ G   D +  ++LLD+
Sbjct: 184 MGREGIEFDGRTFAIILKVCSFLEDTS--LGMQIHGIVVRVGCDTDVVAASALLDM 224

[Close]
BLAST of Cp4.1LG01g17300 vs. TAIR10
Match: AT3G03580.1 (AT3G03580.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 47/150 (31.33%), Postives = 84/150 (56.00%), Query Frame = 1 

Query: 118 DLPSAVSVLNAFPHTEPM-----LWNSIIKSQF--DSGLQNWFLRMYSRLGGEDEFVCFF 177
           DL +  SVL A  H   +     ++N ++K+ F  +S ++N  + +Y++ G        F
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVF 365

Query: 178 SEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQIMGGEVPLIIETLTILIS-ATKTSESM 237
           + ++CK+ VSWN +IS Y   GD+++A+ +FK +M  E      T  +LIS +T+ ++  
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLAD-- 425

Query: 238 CLILGENLHSLAIKTGL-YDSILRTSLLDI 259
            L  G+ LHS  IK+G+  D  +  +L+D+
Sbjct: 426 -LKFGKGLHSNGIKSGICIDLSVSNALIDM 452

[Close]
BLAST of Cp4.1LG01g17300 vs. TAIR10
Match: AT4G18840.1 (AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 34/114 (29.82%), Postives = 57/114 (50.00%), Query Frame = 1 

Query: 88  KQIHAYFILSSGFDTVFIASKLIRLYAKFNDLPSAVSVLNAFPHTEPMLWNSIIKSQFDS 147
           +QIH  FI S     VF+ + L+ +Y +      A  VL+  P  + + WNS++ +  + 
Sbjct: 160 RQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEK 219

Query: 148 GLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIF 202
           GL              DE    F E++ +NV SWN +IS Y++ G + +A ++F
Sbjct: 220 GLV-------------DEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVF 260

[Close]
BLAST of Cp4.1LG01g17300 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-09
Identity = 48/166 (28.92%), Postives = 81/166 (48.80%), Query Frame = 1 

Query: 77  LLQSCQDLRLLK---QIHAYFILSSGFDT-VFIASKLIRLYAKFNDLPSAVSVLNAFPHT 136
           +L+SC   +  K   QIH + +L  G D  +++ + LI +Y +   L  A  V +  PH 
Sbjct: 140 VLKSCAKSKAFKEGQQIHGH-VLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 199

Query: 137 EPMLWNSIIKSQFDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVG 196
           + + + ++IK              Y+  G  +     F EI  K+VVSWN +IS Y+  G
Sbjct: 200 DVVSYTALIKG-------------YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETG 259

Query: 197 DIVKAVDIFKQIMGGEVPLIIETLTILISATKTSESMCLILGENLH 239
           +  +A+++FK +M   V     T+  ++SA   S S  + LG  +H
Sbjct: 260 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS--IELGRQVH 289

[Close]
BLAST of Cp4.1LG01g17300 vs. TAIR10
Match: AT2G20540.1 (AT2G20540.1 mitochondrial editing factor 21)

HSP 1 Score: 55.8 bits (133), Expect = 4.8e-08
Identity = 48/173 (27.75%), Postives = 80/173 (46.24%), Query Frame = 1 

Query: 77  LLQSCQDLR---LLKQIHAYFILSSGFDTVFIASKLIRLYAKFNDLPSAVSVLNAFPHTE 136
           + +SC  L    L KQ+H +         V   + LI +Y KF+DL  A  V +     +
Sbjct: 115 MFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERD 174

Query: 137 PMLWNSIIKSQFDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGD 196
            + WNS++               Y+RLG   +    F  +  K +VSW  +IS Y+ +G 
Sbjct: 175 VISWNSLLSG-------------YARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGC 234

Query: 197 IVKAVDIFKQI-MGGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTG 246
            V+A+D F+++ + G  P  I  +++L S  +      L LG+ +H  A + G
Sbjct: 235 YVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGS---LELGKWIHLYAERRG 271

[Close]
BLAST of Cp4.1LG01g17300 vs. NCBI nr
Match: gi|659115504|ref|XP_008457590.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 92/114 (80.70%), Postives = 99/114 (86.84%), Query Frame = 1 

Query: 145 FDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQI 204
           FD+GLQN FLRMYSRLGGEDE V FFSEID KNVVSWNIL+SFYSS+GDIVK VDI  +I
Sbjct: 169 FDTGLQNSFLRMYSRLGGEDEVVAFFSEIDFKNVVSWNILMSFYSSMGDIVKVVDILNKI 228

Query: 205 MGGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLDI 259
           M GEVPL IETLTILIS   TS+S CLILGENLHSLAIK+GLYD IL TSLLD+
Sbjct: 229 M-GEVPLSIETLTILISGIATSDSGCLILGENLHSLAIKSGLYDDILCTSLLDM 281

[Close]
BLAST of Cp4.1LG01g17300 vs. NCBI nr
Match: gi|658057546|ref|XP_008364552.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like, partial [Malus domestica])

HSP 1 Score: 102.8 bits (255), Expect = 9.8e-19
Identity = 58/114 (50.88%), Postives = 81/114 (71.05%), Query Frame = 1 

Query: 145 FDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQI 204
           +D+ +QN  LRMY++LG  +E   FFSE+D ++VVSWNI ISF+SS+GD+ K  + F   
Sbjct: 279 YDASVQNSILRMYAKLGTINEVEDFFSELDRRDVVSWNICISFFSSIGDVAKVREXFND- 338

Query: 205 MGGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLDI 259
           M G+V   +ETLT++ISA   ++   L  GE+LH LAIK GL D +L+TSLLD+
Sbjct: 339 MQGKVAPGVETLTLVISA--LTKHGILSQGESLHCLAIKRGLCDHVLQTSLLDL 389

[Close]
BLAST of Cp4.1LG01g17300 vs. NCBI nr
Match: gi|764608911|ref|XP_004305697.2| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580, partial [Fragaria vesca subsp. vesca])

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 1 

Query: 149 LQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQIMGGE 208
           ++N  LRMY++LG  +E   FF E+D ++VV+WNI IS+Y+S GD+VK  D+FK+ M GE
Sbjct: 284 VENSILRMYAKLGTGEEVEDFFRELDRRDVVTWNICISYYTSRGDVVKVRDLFKE-MQGE 343

Query: 209 VPLIIETLTILISATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLD 258
           V   IETLTI+ISA        L  GE+LH LAIK+GL D +L+TSLLD
Sbjct: 344 VAPSIETLTIVISALAIHG--ILSQGESLHGLAIKSGLRDDVLQTSLLD 389

[Close]
BLAST of Cp4.1LG01g17300 vs. NCBI nr
Match: gi|694428826|ref|XP_009341960.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 57/114 (50.00%), Postives = 80/114 (70.18%), Query Frame = 1 

Query: 145 FDSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQI 204
           +D+ +QN  LRMY++LG  +E   FFSE+D ++VVSWNI IS +SS GD+ K  ++F   
Sbjct: 280 YDASVQNSILRMYAKLGTINEVEGFFSELDRRDVVSWNICISIFSSRGDVAKVRELFND- 339

Query: 205 MGGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLDI 259
           M G+V   +ETLT++ISA   ++   L  GE+LH LAIK GL D +L+TSLLD+
Sbjct: 340 MQGKVAPGVETLTLVISA--LAKHGILSQGESLHCLAIKRGLCDHVLQTSLLDL 390

[Close]
BLAST of Cp4.1LG01g17300 vs. NCBI nr
Match: gi|645271147|ref|XP_008240777.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Prunus mume])

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-17
Identity = 58/112 (51.79%), Postives = 76/112 (67.86%), Query Frame = 1 

Query: 146 DSGLQNWFLRMYSRLGGEDEFVCFFSEIDCKNVVSWNILISFYSSVGDIVKAVDIFKQIM 205
           D  +QN   RMY++LG  D+   FF ++D ++VVSWNI ISFYS  GD+VK  D+F + M
Sbjct: 271 DGSVQNSIFRMYAKLGTVDQVEDFFGQLDRRDVVSWNIRISFYSWRGDVVKVRDLFHE-M 330

Query: 206 GGEVPLIIETLTILISATKTSESMCLILGENLHSLAIKTGLYDSILRTSLLD 258
            GEV    ETLT++ISA   ++   L  GE+LH LA K+GL D IL+TSLLD
Sbjct: 331 QGEVAPSSETLTLVISA--LTKHGILSQGESLHCLATKSGLCDDILQTSLLD 379

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g17300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP207_ARATH1.8e-0925.57Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN... [more]
PP210_ARATH2.0e-0831.33Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN... [more]
PP321_ARATH3.5e-0829.82Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN... [more]
PPR21_ARATH5.9e-0828.92Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
PP165_ARATH8.6e-0727.75Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG01g17300 vs. TrEMBL
Match NameE-valueIdentityDescription
M5VVK0_PRUPE2.2e-1750.89Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002924mg PE=4 SV=1[more]
A0A151UG03_CAJCA1.0e-1452.53Uncharacterized protein OS=Cajanus cajan GN=KK1_048185 PE=4 SV=1[more]
F6HLP2_VITVI1.3e-1445.97Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05770 PE=4 SV=... [more]
A0A0S3SU84_PHAAN8.6e-1446.90Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G334900 PE=... [more]
A0A068V0Q3_COFCA8.6e-1434.97Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040477001 PE=4 SV=1[more]
BLAST of Cp4.1LG01g17300 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G02330.11.0e-1025.57 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G03580.11.1e-0931.33 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G18840.12.0e-0929.82 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G08070.13.3e-0928.92 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G20540.14.8e-0827.75 mitochondrial editing factor 21[more]
BLAST of Cp4.1LG01g17300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115504|ref|XP_008457590.1|2.2e-3980.70PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic-... [more]
gi|658057546|ref|XP_008364552.1|9.8e-1950.88PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g... [more]
gi|764608911|ref|XP_004305697.2|1.3e-1854.13PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580, parti... [more]
gi|694428826|ref|XP_009341960.1|1.1e-1750.00PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-... [more]
gi|645271147|ref|XP_008240777.1|2.4e-1751.79PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17300.1Cp4.1LG01g17300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 179..204
score: 2.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 179..205
score: 6.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 177..211
score: 9
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 75..257
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g17300Carg27656Silver-seed gourdcarcpeB0314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g17300Melon (DHL92) v3.6.1cpemedB429
Cp4.1LG01g17300Wax gourdcpewgoB0540
Cp4.1LG01g17300Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g17300Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g17300Cucurbita maxima (Rimu)cmacpeB725
Cp4.1LG01g17300Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g17300Cucurbita moschata (Rifu)cmocpeB677
Cp4.1LG01g17300Cucurbita moschata (Rifu)cmocpeB680
Cp4.1LG01g17300Cucurbita moschata (Rifu)cmocpeB682
Cp4.1LG01g17300Cucurbita moschata (Rifu)cmocpeB686
Cp4.1LG01g17300Wild cucumber (PI 183967)cpecpiB453
Cp4.1LG01g17300Cucumber (Chinese Long) v2cpecuB448
Cp4.1LG01g17300Bottle gourd (USVL1VR-Ls)cpelsiB321
Cp4.1LG01g17300Melon (DHL92) v3.5.1cpemeB371