Cp4.1LG01g17140 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g17140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionATP-dependent Clp protease
LocationCp4.1LG01 : 11429450 .. 11429830 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGGTTGTGGTTAGTTTGAATGCTGGAAAGTGGTGCCGCCAACTGAATTCATTATGTTCAGGTTCCGGAAAGTAAGAGCATAAGGGCTGTTCTGGTTGATGAAGAAGCTGTTGGATCAGTGGACGGTCCAGGATGCGGAGCCAAAGTTCTTTATGATGTTGATGAATTAAAGCAATGTTCAAAAAGTGGAATAGTCATAAATCTGAAGGTATTTTCCCATCATACTCACTTCAACCCTTATAGTGTTAGTATTTTCTTTGGTGGCTATGAAGTTTGATATAATATCTCTGCCCTGATGAACAGGGAAATGGTTTATTGGCGGAGGACGAGGGTCGGTTCTCGAATGGAGTCGAGTTTCCATCCGTAACTATGAGA

mRNA sequence

ATGGCAGTTCCGGAAAGTAAGAGCATAAGGGCTGTTCTGGTTGATGAAGAAGCTGTTGGATCAGTGGACGGTCCAGGATGCGGAGCCAAAGTTCTTTATGATGTTGATGAATTAAAGCAATGTTCAAAAAGTGGAATAGTCATAAATCTGAAGGGAAATGGTTTATTGGCGGAGGACGAGGGTCGGTTCTCGAATGGAGTCGAGTTTCCATCCGTAACTATGAGA

Coding sequence (CDS)

ATGGCAGTTCCGGAAAGTAAGAGCATAAGGGCTGTTCTGGTTGATGAAGAAGCTGTTGGATCAGTGGACGGTCCAGGATGCGGAGCCAAAGTTCTTTATGATGTTGATGAATTAAAGCAATGTTCAAAAAGTGGAATAGTCATAAATCTGAAGGGAAATGGTTTATTGGCGGAGGACGAGGGTCGGTTCTCGAATGGAGTCGAGTTTCCATCCGTAACTATGAGA

Protein sequence

MAVPESKSIRAVLVDEEAVGSVDGPGCGAKVLYDVDELKQCSKSGIVINLKGNGLLAEDEGRFSNGVEFPSVTMR
BLAST of Cp4.1LG01g17140 vs. TrEMBL
Match: A0A0A0KR77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G527380 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.3e-21
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 1

Query: 3   VPESKSIRAVLVDEEAVGSVDGPGCGAKVLYDVDELKQCSKSGIVINLKGNGLLAEDEGR 62
           VPES SI+AVLVDEEAVGSVD  GCGAK+L DVDEL QCSKS I+ NLK N ++A +EGR
Sbjct: 155 VPESNSIKAVLVDEEAVGSVDASGCGAKILCDVDELTQCSKSEIMRNLKVNDMVAGNEGR 214

Query: 63  FSNGVEFPSVTMR 76
            SNGVEFPSV +R
Sbjct: 215 LSNGVEFPSVAIR 227

BLAST of Cp4.1LG01g17140 vs. TAIR10
Match: AT5G49840.1 (AT5G49840.1 ATP-dependent Clp protease)

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1

Query: 6   SKSIRAVLVDEEAVGSVDGPGCGAKVLYDVDELKQ 41
           S+SI+AVLVDEEAVGSV  PGCGAK+L   + L+Q
Sbjct: 552 SQSIKAVLVDEEAVGSVGSPGCGAKILKGDNVLQQ 586

BLAST of Cp4.1LG01g17140 vs. NCBI nr
Match: gi|659121295|ref|XP_008460587.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 1

Query: 3   VPESKSIRAVLVDEEAVGSVDGPGCGAKVLYDVDELKQCSKSGIVINLKGNGLLAEDEGR 62
           VPES SI+AVLVD E+VGSVD PGCGAK+L DVDEL +CSKS I+ NLKGN ++A+DEGR
Sbjct: 540 VPESNSIKAVLVDGESVGSVDAPGCGAKILCDVDELTKCSKSEIIRNLKGNDMVADDEGR 599

Query: 63  FSNGVEFPSVTM 75
           FSNGVEFPSV M
Sbjct: 600 FSNGVEFPSVAM 611

BLAST of Cp4.1LG01g17140 vs. NCBI nr
Match: gi|659121297|ref|XP_008460588.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X3 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 1

Query: 3   VPESKSIRAVLVDEEAVGSVDGPGCGAKVLYDVDELKQCSKSGIVINLKGNGLLAEDEGR 62
           VPES SI+AVLVD E+VGSVD PGCGAK+L DVDEL +CSKS I+ NLKGN ++A+DEGR
Sbjct: 518 VPESNSIKAVLVDGESVGSVDAPGCGAKILCDVDELTKCSKSEIIRNLKGNDMVADDEGR 577

Query: 63  FSNGVEFPSVTM 75
           FSNGVEFPSV M
Sbjct: 578 FSNGVEFPSVAM 589

BLAST of Cp4.1LG01g17140 vs. NCBI nr
Match: gi|659121299|ref|XP_008460589.1| (PREDICTED: mitochondrial clpX-like chaperone MCX1 isoform X4 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 1

Query: 3   VPESKSIRAVLVDEEAVGSVDGPGCGAKVLYDVDELKQCSKSGIVINLKGNGLLAEDEGR 62
           VPES SI+AVLVD E+VGSVD PGCGAK+L DVDEL +CSKS I+ NLKGN ++A+DEGR
Sbjct: 465 VPESNSIKAVLVDGESVGSVDAPGCGAKILCDVDELTKCSKSEIIRNLKGNDMVADDEGR 524

Query: 63  FSNGVEFPSVTM 75
           FSNGVEFPSV M
Sbjct: 525 FSNGVEFPSVAM 536

BLAST of Cp4.1LG01g17140 vs. NCBI nr
Match: gi|659121293|ref|XP_008460586.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 1

Query: 3   VPESKSIRAVLVDEEAVGSVDGPGCGAKVLYDVDELKQCSKSGIVINLKGNGLLAEDEGR 62
           VPES SI+AVLVD E+VGSVD PGCGAK+L DVDEL +CSKS I+ NLKGN ++A+DEGR
Sbjct: 546 VPESNSIKAVLVDGESVGSVDAPGCGAKILCDVDELTKCSKSEIIRNLKGNDMVADDEGR 605

Query: 63  FSNGVEFPSVTM 75
           FSNGVEFPSV M
Sbjct: 606 FSNGVEFPSVAM 617

BLAST of Cp4.1LG01g17140 vs. NCBI nr
Match: gi|700196222|gb|KGN51399.1| (hypothetical protein Csa_5G527380 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-21
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 1

Query: 3   VPESKSIRAVLVDEEAVGSVDGPGCGAKVLYDVDELKQCSKSGIVINLKGNGLLAEDEGR 62
           VPES SI+AVLVDEEAVGSVD  GCGAK+L DVDEL QCSKS I+ NLK N ++A +EGR
Sbjct: 155 VPESNSIKAVLVDEEAVGSVDASGCGAKILCDVDELTQCSKSEIMRNLKVNDMVAGNEGR 214

Query: 63  FSNGVEFPSVTMR 76
            SNGVEFPSV +R
Sbjct: 215 LSNGVEFPSVAIR 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KR77_CUCSA3.3e-2173.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G527380 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G49840.11.6e-0668.57 ATP-dependent Clp protease[more]
Match NameE-valueIdentityDescription
gi|659121295|ref|XP_008460587.1|3.0e-2376.39PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondri... [more]
gi|659121297|ref|XP_008460588.1|3.0e-2376.39PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondri... [more]
gi|659121299|ref|XP_008460589.1|3.0e-2376.39PREDICTED: mitochondrial clpX-like chaperone MCX1 isoform X4 [Cucumis melo][more]
gi|659121293|ref|XP_008460586.1|3.0e-2376.39PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondri... [more]
gi|700196222|gb|KGN51399.1|4.8e-2173.97hypothetical protein Csa_5G527380 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006457 protein folding
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0051082 unfolded protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17140.1Cp4.1LG01g17140.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g17140MELO3C022924.2Melon (DHL92) v3.6.1cpemedB429
Cp4.1LG01g17140CsaV3_5G027440Cucumber (Chinese Long) v3cpecucB0560
Cp4.1LG01g17140BhiUN159G30Wax gourdcpewgoB0540
Cp4.1LG01g17140CsGy5G018200Cucumber (Gy14) v2cgybcpeB664
Cp4.1LG01g17140Carg26174Silver-seed gourdcarcpeB0397
The following gene(s) are paralogous to this gene:

None