Cp4.1LG01g16790 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g16790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG01 : 10614166 .. 10618936 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAACCATTAATGTGTAAGAAGAGAGCTGCAATTCTTGCTAGACGCTCCTTAATAGCACTATGCAACATACGATCTTCATGTAGCTCCTCAGTATCAAACAAAGTCCTAAATCAAGTTAGAAATTTAAGCATTGCTTCTGAAAGAGAGGAATATCAGAACGATAATGGATATCATGCAGATAACTCTTTGCAGAGTTACCAGAGCCATAGTGGATTTAGCAGTGACAGCCAAAGCCCTGGGTACTATCAGCATCATGCCCAAAGTGCTAGTTTCCAAATCTCTTCTTGGCCTAATCAGAATATTCTACTTGAGCGTAGAGAAAATTTAACTGCATACAATGGGTTTAACAATGGAGAACTGCAGCAGAACAATTATGAGGTTTCTGGACAGAATTCATGGGGCACGCAGATTGAATCCAGACAATTTGTACATGGCAACAGCCTAAATTACCACAATTCTATGCCAGGACTAAACAACCATATTCCCATCTCAAGACAATATGAGCAAAACTCTATGTCTCAGCCACATCCACAGGGGCAATATCAACAAGGTGGCAGTGTTGAACTATATCAGCCAAACCCAGATACTATTCAGAGTCGCACGATTGGTACTCAAGTATTAAAAAACACCAATGCTGATGAGGAAATTGGCGTGACTAAGGATAACCCATATGGTGGTACCCTTGAGGAGCTTGATGAATTCTGCAGGGAAGGAAAATTGAAGGAGGCTGTGCAAATTCTGGAAATGTTAGAGAAACAAAACATTCCTGTTGATTTATCCCGGTATTTAAATTTGATGAATGCATGTGGGGAAGCAAGGTCCCTAGAAGAAGCCAAAGTGGTTTGTAATTACGTAATAAAATCTCAAACCCCTCTCAAAGTTAGCACCTATAACAAAATTCTGGAGATGTACTCTAAATGTGGTTCCATGGATGATGCCTATATGATATTCAATAAAATGCCCAGCCGCAACCTAACATCTTGGGATACTATGATTACGTGGCTTGCTAAGAATGGCCTAGGGGAAGATGCTATTGACCTTTTCTACGAGTTCAAAAAAACTGGGTTGAGAATTGATGGAAAAATGTTCATTGGAGTTTTCTCGGCATGTAGTGTCTTGGGAGATGTTGATGAGGGGATGTTACACTTTGAATCAATGACAAAGAATTATGGCATCATTCCTTCTATGCAACATTATGTTAGTATAATAGACATGCTTGGTAGTGTAGGTTATGTAGATGAAGCATTGGAGTTCATTGAAAAGATGCCATTTGAGCCAGGGGTAGATATTTGGGAAGCAATGATGAATATCTCTAGAGCTCATGGGTTGATGGAGCTTGGTGATCGTTGTTTTGAGCTTGTCGAGCAGCTTGATCCCTCTCGCTTAAATGAGCAATCAAAAGCTGGCCATTTGCCTATAAAAGCTTCAGACCTTGCAAAAGAGAGAGAGAAGAAAAAATTAGCCAACCGGAATCTTTTAGAAGTCAGGAGCCGAGTACATGAATATCGAGCTGGAGATACTTCTCACCCTGAGAATGACAGGATCTATACCTTGCTTAGGGGTTTGAGGGAACAAATGAAGGAGGCTGGTTATATTCCAGAGACTCGATTTGTACTCCATGATATAGATCAGGAAGGCAAAAATGATGCTCTACTTGGTCATAGTGAGAGACTTGCTGTTGCATATGGTCTAATCAGCAGCTCAGCCCGCTCACCCATAAGAGTAATTAAGAACCTTCGAGTTTGTGGTGATTGCCATAGTGCACTAAAGATAATTTCAAAAATTGTGGGTCGAGAACTCATCATCCGTGATGCTAAGAGATTTCACCATTTTAAAGATGGATTATGCTCTTGCCGTGATTACTGGTGAAGAAAACGAAACTTGAGGTATGTCTTGTCTCCACTTGTTTTCCTTTAATGTCTAAGCTTTTGTCAGGTTTGGACATATTGATAAATTGCTTTAATTTATATTCCTCATTCCCGTTAAAAATTGAATTGCAAAATTAGGTTGGCGCTGAATTATATGTTGTATTTTGTGATGTTATGAAAGTTTATCTTTATATTCCTGGTCTTTGTTTTTGTTGTTTTATTTTAATTCGTGGTCTTCTCATTTCATTGTTGCATTTGCATCTTGTTCAAAGTTTGGTTGGACATTGAAATTATCTTGTTCATTGAAATCTATATATTTTTTTTTTTTTTTTTTAGAAGTTAGGAAATGCATGTTTAGAGTTTGGCTAGAGATTGAATTACCTCTTGCTCGATAGACTCTAGTAGCACGGTCAGTTATCTGTCATTACCTAAAAGGGGAAAAATTTTGTGACACCTCCTAGATGAAACCGTACGTGTACTTGATTGTAGTATCAAGTAATAAGTGACGTTCTCAGTGCAATATTCTTAATGATAGTGTGTTGTCATCCACTCATTTACAAATTATTGAGACTGATAATGCCTTCCCCCTTCCTGCCTCCTCGAGGTGTATTGATTGGCAATGATGTGTTGTCCAAAGTGACATACCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGTAATATATGATTTTGGTACTTTGTATAGGATCCTGGATTTTGTAAAAGTAAGAACTTTGTATTGTAAGGTAATAAATGGTCCATATTCCTTAATGGTGGATTTATGCTTCTAAAAGGCTTCATCAAGGTGAACCATGAGCTCCATTTCTATTTTTGCTAGTTGGAGAAGTTCTAAGCGGATACATGGACAAAGGTATGTCTATGACGGTTTTAAAGGCTTTTTTGTTGGCAAAGATGGGATTCTTACAAGAAATAATTTTTCATCGATGAAATGAAAAATCACAGAGAAATATGGAAAATTTTTCACAGAAGAAATGACAACTAAGGCTATCGGATCATCTTACAACACTGACCAAAACAAACTATACTAACTCTTGATCAAATAGAAAAACTAAACAAGAAACAAAAACTAGGAAAGCACACTATGATGTCAACAACTGTAAGTTTCAAACTCCCAAACCACCAGCAGCAGCTTTCTTTCGAGCTCCCTCATTAGTCAAAACAAACTGCCGACAGCAAAAACTCTTCCTCCCACAACAATGGATCAGAAATTGCAACTTGAGCACCATCTACCTTTGGAACCAACAACAAATAGAGAAAACCGTACTTGAAGAACTCTCAAGAATTTGTAAAACTCAAATGAAAGACAATAACTTAAATAATCTTTTGCCTCGTAAACTTTGAAACAATTTTGAGACCTTTTCAGGCTTCAAAGTAAATCAAACAAATTCATGGTGAGCAATATCAACCTGAGCAACATAAGATAACATGGCTCATAAAGTGCGTGAATTTTGAACCTCTACCATCGGGGGGGTAATTTTGAAAAGAAAGAGGTGTTGATAGATGAAGGATTTTGGTTTGTCTAGGGGAGGGATGATGCTTTGTAATGTCATTCTTACAAATTTCATAATGTTCTGGCTTTGGCTTAATGAATCCTTACTCTTCTAATATTCTGTCATTTGCAAACAATACCAATAGAGAGTTCTCTTTATTAGGGAATGTCATGGATTATCTCTTCTTTGTTGCCTAGCTAAGGAGAAAATGTGTGTGAGAGAGAAGGGAGAGTAGGAGGTGGGGATGGAAATGGATGGCATTCCTAGTCGGGGAAGATAAAAGTGGAATCTAAGGATTCGAACTCCTTGATGTAAGATTTAAGGGGAAGTAGATTAAATCTTAAGGAAAGAAGCAGAGTTGTGACTTCAATTTTATCCAATTGGTCTCAGCTATTGGAGCTATCGTTTAACAATAAAGCTGTTGTGGTTGAATTTTTCCTGATCGGTTCACATGGAGTAAACTCGAGTAACTTTATACTTGAGCTGAGGTGTAACATAGGCAAAAAGAATGAATGCTCGAGTGGTTGAAAAGAGAACTTTGGGTTTTGTAGGAGACATAGCGTTAATATGCTTTCTAATCATCAAAATTGTTCATACTGTTCATGCTTTTATAAAGTGGCCTCTAAGTTTCCTAATCATCTCATTGATCCTTGTTTAGATTACATGCTTCCTTGTTCACGAGCTGTTTCAGAAGGTTAGCTTTTTTAGTAGGTATTTCTCATCTTCCCCTCTGGCTATTGTAGAAGCACTATGACAGATAAATGCACAACTCTCATTGCATATGCATCTTCTGCAGCTCCATTACCCATGTTCAAAAGGGTGTCGAGGTTCAAAATTAACAGAAAGTTCAAAATTACTATTCCCAGGCAAAGTCACCGAACTCTTTCACACTTGGTGGAGGCTTATGCTTGAGAATGTTTGGAACAAACCGCTGATGGCTTGTGCCTGGGCTCGGATCAAACCTAAACTATTCTTCCTAAACTGCAGCTATTATTTCTCGACATCTCTTATTTACTTAGTAATGTAATCACCATTATCAATAACCCCAATTTTGATGTAGCAAGAGAACTAGTGATAGACAAACTGGAGCCAAGCAGTCGGTCAAACTAAACGAAAGTCGAATTGAACAATTTCTATTTTGTTTTCCCAATGATTTATTGGTTCAATTCTATGTACTATTTTCTATTTGGATTGGTTTTATCAATGTTCTATAGAGACAAGCCAATGTGTCTGTACATATGTTAGTGAACAAAGTATCATGTAGTGTGTAATCTTTCTGAGCAGTTCGATATGGGAAAATGTTTTGGTGGGAAAATTTGTGCATTTTTAGTTGGTTTATCAATGAAGAAACTACTTAAACCAAGAGTAGTAAACAT

mRNA sequence

TTGAACCATTAATGTGTAAGAAGAGAGCTGCAATTCTTGCTAGACGCTCCTTAATAGCACTATGCAACATACGATCTTCATGTAGCTCCTCAGTATCAAACAAAGTCCTAAATCAAGTTAGAAATTTAAGCATTGCTTCTGAAAGAGAGGAATATCAGAACGATAATGGATATCATGCAGATAACTCTTTGCAGAGTTACCAGAGCCATAGTGGATTTAGCAGTGACAGCCAAAGCCCTGGGTACTATCAGCATCATGCCCAAAGTGCTAGTTTCCAAATCTCTTCTTGGCCTAATCAGAATATTCTACTTGAGCGTAGAGAAAATTTAACTGCATACAATGGGTTTAACAATGGAGAACTGCAGCAGAACAATTATGAGGTTTCTGGACAGAATTCATGGGGCACGCAGATTGAATCCAGACAATTTGTACATGGCAACAGCCTAAATTACCACAATTCTATGCCAGGACTAAACAACCATATTCCCATCTCAAGACAATATGAGCAAAACTCTATGTCTCAGCCACATCCACAGGGGCAATATCAACAAGGTGGCAGTGTTGAACTATATCAGCCAAACCCAGATACTATTCAGAGTCGCACGATTGGTACTCAAGTATTAAAAAACACCAATGCTGATGAGGAAATTGGCGTGACTAAGGATAACCCATATGGTGGTACCCTTGAGGAGCTTGATGAATTCTGCAGGGAAGGAAAATTGAAGGAGGCTGTGCAAATTCTGGAAATGTTAGAGAAACAAAACATTCCTGTTGATTTATCCCGGTATTTAAATTTGATGAATGCATGTGGGGAAGCAAGGTCCCTAGAAGAAGCCAAAGTGGTTTGTAATTACGTAATAAAATCTCAAACCCCTCTCAAAGTTAGCACCTATAACAAAATTCTGGAGATGTACTCTAAATGTGGTTCCATGGATGATGCCTATATGATATTCAATAAAATGCCCAGCCGCAACCTAACATCTTGGGATACTATGATTACGTGGCTTGCTAAGAATGGCCTAGGGGAAGATGCTATTGACCTTTTCTACGAGTTCAAAAAAACTGGGTTGAGAATTGATGGAAAAATGTTCATTGGAGTTTTCTCGGCATGTAGTGTCTTGGGAGATGTTGATGAGGGGATGTTACACTTTGAATCAATGACAAAGAATTATGGCATCATTCCTTCTATGCAACATTATGTTAGTATAATAGACATGCTTGGTAGTGTAGGTTATGTAGATGAAGCATTGGAGTTCATTGAAAAGATGCCATTTGAGCCAGGGGTAGATATTTGGGAAGCAATGATGAATATCTCTAGAGCTCATGGGTTGATGGAGCTTGGTGATCGTTGTTTTGAGCTTGTCGAGCAGCTTGATCCCTCTCGCTTAAATGAGCAATCAAAAGCTGGCCATTTGCCTATAAAAGCTTCAGACCTTGCAAAAGAGAGAGAGAAGAAAAAATTAGCCAACCGGAATCTTTTAGAAGTCAGGAGCCGAAAGTTAGGAAATGCATGTTTAGAGATCCTGGATTTTGTAAAAGTAAGAACTTTGTATTGTAAGATTACATGCTTCCTTGTTCACGAGCTGTTTCAGAAGCTCCATTACCCATGTTCAAAAGGGTGTCGAGGTTCAAAATTAACAGAAAGTTCAAAATTACTATTCCCAGGCAAAGTCACCGAACTCTTTCACACTTGGTGGAGGCTTATGCTTGAGAATGTTTGGAACAAACCGCTGATGGCTTGTGCCTGGGCTCGGATCAAACCTAAACTATTCTTCCTAAACTGCAGCTATTATTTCTCGACATCTCTTATTTACTTAGTAATGTAATCACCATTATCAATAACCCCAATTTTGATGTAGCAAGAGAACTAGTGATAGACAAACTGGAGCCAAGCAGTCGGTCAAACTAAACGAAAGTCGAATTGAACAATTTCTATTTTGTTTTCCCAATGATTTATTGGTTCAATTCTATGTACTATTTTCTATTTGGATTGGTTTTATCAATGTTCTATAGAGACAAGCCAATGTGTCTGTACATATGTTAGTGAACAAAGTATCATGTAGTGTGTAATCTTTCTGAGCAGTTCGATATGGGAAAATGTTTTGGTGGGAAAATTTGTGCATTTTTAGTTGGTTTATCAATGAAGAAACTACTTAAACCAAGAGTAGTAAACAT

Coding sequence (CDS)

ATGTGTAAGAAGAGAGCTGCAATTCTTGCTAGACGCTCCTTAATAGCACTATGCAACATACGATCTTCATGTAGCTCCTCAGTATCAAACAAAGTCCTAAATCAAGTTAGAAATTTAAGCATTGCTTCTGAAAGAGAGGAATATCAGAACGATAATGGATATCATGCAGATAACTCTTTGCAGAGTTACCAGAGCCATAGTGGATTTAGCAGTGACAGCCAAAGCCCTGGGTACTATCAGCATCATGCCCAAAGTGCTAGTTTCCAAATCTCTTCTTGGCCTAATCAGAATATTCTACTTGAGCGTAGAGAAAATTTAACTGCATACAATGGGTTTAACAATGGAGAACTGCAGCAGAACAATTATGAGGTTTCTGGACAGAATTCATGGGGCACGCAGATTGAATCCAGACAATTTGTACATGGCAACAGCCTAAATTACCACAATTCTATGCCAGGACTAAACAACCATATTCCCATCTCAAGACAATATGAGCAAAACTCTATGTCTCAGCCACATCCACAGGGGCAATATCAACAAGGTGGCAGTGTTGAACTATATCAGCCAAACCCAGATACTATTCAGAGTCGCACGATTGGTACTCAAGTATTAAAAAACACCAATGCTGATGAGGAAATTGGCGTGACTAAGGATAACCCATATGGTGGTACCCTTGAGGAGCTTGATGAATTCTGCAGGGAAGGAAAATTGAAGGAGGCTGTGCAAATTCTGGAAATGTTAGAGAAACAAAACATTCCTGTTGATTTATCCCGGTATTTAAATTTGATGAATGCATGTGGGGAAGCAAGGTCCCTAGAAGAAGCCAAAGTGGTTTGTAATTACGTAATAAAATCTCAAACCCCTCTCAAAGTTAGCACCTATAACAAAATTCTGGAGATGTACTCTAAATGTGGTTCCATGGATGATGCCTATATGATATTCAATAAAATGCCCAGCCGCAACCTAACATCTTGGGATACTATGATTACGTGGCTTGCTAAGAATGGCCTAGGGGAAGATGCTATTGACCTTTTCTACGAGTTCAAAAAAACTGGGTTGAGAATTGATGGAAAAATGTTCATTGGAGTTTTCTCGGCATGTAGTGTCTTGGGAGATGTTGATGAGGGGATGTTACACTTTGAATCAATGACAAAGAATTATGGCATCATTCCTTCTATGCAACATTATGTTAGTATAATAGACATGCTTGGTAGTGTAGGTTATGTAGATGAAGCATTGGAGTTCATTGAAAAGATGCCATTTGAGCCAGGGGTAGATATTTGGGAAGCAATGATGAATATCTCTAGAGCTCATGGGTTGATGGAGCTTGGTGATCGTTGTTTTGAGCTTGTCGAGCAGCTTGATCCCTCTCGCTTAAATGAGCAATCAAAAGCTGGCCATTTGCCTATAAAAGCTTCAGACCTTGCAAAAGAGAGAGAGAAGAAAAAATTAGCCAACCGGAATCTTTTAGAAGTCAGGAGCCGAAAGTTAGGAAATGCATGTTTAGAGATCCTGGATTTTGTAAAAGTAAGAACTTTGTATTGTAAGATTACATGCTTCCTTGTTCACGAGCTGTTTCAGAAGCTCCATTACCCATGTTCAAAAGGGTGTCGAGGTTCAAAATTAACAGAAAGTTCAAAATTACTATTCCCAGGCAAAGTCACCGAACTCTTTCACACTTGGTGGAGGCTTATGCTTGAGAATGTTTGGAACAAACCGCTGATGGCTTGTGCCTGGGCTCGGATCAAACCTAAACTATTCTTCCTAAACTGCAGCTATTATTTCTCGACATCTCTTATTTACTTAGTAATGTAA

Protein sequence

MCKKRAAILARRSLIALCNIRSSCSSSVSNKVLNQVRNLSIASEREEYQNDNGYHADNSLQSYQSHSGFSSDSQSPGYYQHHAQSASFQISSWPNQNILLERRENLTAYNGFNNGELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYHNSMPGLNNHIPISRQYEQNSMSQPHPQGQYQQGGSVELYQPNPDTIQSRTIGTQVLKNTNADEEIGVTKDNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPSRLNEQSKAGHLPIKASDLAKEREKKKLANRNLLEVRSRKLGNACLEILDFVKVRTLYCKITCFLVHELFQKLHYPCSKGCRGSKLTESSKLLFPGKVTELFHTWWRLMLENVWNKPLMACAWARIKPKLFFLNCSYYFSTSLIYLVM

Homology

[Close]

BLAST of Cp4.1LG01g16790 vs. Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.0e-77
Identity = 176/404 (43.56%), Postives = 234/404 (57.92%), Query Frame = 1


Query: 95  NQNILLERRENLTAYNGFNNGE-----LQQNNYE-----VSGQNSWGTQIESRQFVHGNS 154
           N N +     ++   NGFN GE      QQN+YE     VSGQN       + +F     
Sbjct: 40  NGNPMDNSSHHIGYVNGFNGGEQSLGGFQQNSYEQSLNPVSGQNP------TNRFYQ--- 99

Query: 155 LNYHNSMPGLNNHIPISRQYEQNSMSQPHPQGQYQQGGSVELYQPNPDTIQSRTIGTQVL 214
            N +N       H  I  Q  QN  S          G  V   Q N              
Sbjct: 100 -NGYNRNQSYGEHSEIINQRNQNWQSSDGCSSYGTTGNGVP--QEN-------------- 159

Query: 215 KNTNADEEIGVTKDNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMN 274
            NT  +      +D+    +L+ELD  CREGK+K+AV+I++    +   VDL R   +  
Sbjct: 160 -NTGGNH---FQQDHSGHSSLDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQ 219

Query: 275 ACGEARSLEEAKVVCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTS 334
            CG+A++L+EAKVV  ++  S     +S YN I+EMYS CGS++DA  +FN MP RNL +
Sbjct: 220 LCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLET 279

Query: 335 WDTMITWLAKNGLGEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMT 394
           W  +I   AKNG GEDAID F  FK+ G + DG+MF  +F AC VLGD++EG+LHFESM 
Sbjct: 280 WCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMY 339

Query: 395 KNYGIIPSMQHYVSIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELG 454
           K YGIIP M+HYVS++ ML   GY+DEAL F+E M  EP VD+WE +MN+SR HG + LG
Sbjct: 340 KEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVESM--EPNVDLWETLMNLSRVHGDLILG 399

Query: 455 DRCFELVEQLDPSRLNEQSKAGHLPIKASDLAKEREKKKLANRN 489
           DRC ++VEQLD SRLN++SKAG +P+K+SDL KE+ ++     N
Sbjct: 400 DRCQDMVEQLDASRLNKESKAGLVPVKSSDLVKEKLQRMAKGPN 411

[Close]

BLAST of Cp4.1LG01g16790 vs. Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-76
Identity = 136/259 (52.51%), Postives = 188/259 (72.59%), Query Frame = 1


Query: 225 LEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYVIK 284
           +EE D FC+ GK+K+A+  +++L   N  VDLSR L L   CGEA  L+EAK V   +  
Sbjct: 223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISA 282

Query: 285 SQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAIDL 344
           S + L +S+ + +LEMYS CG  ++A  +F KM  +NL +W  +I   AKNG GEDAID+
Sbjct: 283 SVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDM 342

Query: 345 FYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDMLG 404
           F  FK+ G   DG++F G+F AC +LGDVDEG+LHFESM+++YGI PS++ YVS+++M  
Sbjct: 343 FSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYA 402

Query: 405 SVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPSRLNEQSK 464
             G++DEALEF+E+MP EP VD+WE +MN+SR HG +ELGD C E+VE LDP+RLN+QS+
Sbjct: 403 LPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSR 462

Query: 465 AGHLPIKASDLAKEREKKK 484
            G +P+KASD+ KE  KK+
Sbjct: 463 EGFIPVKASDVEKESLKKR 481

[Close]

BLAST of Cp4.1LG01g16790 vs. Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.8e-65
Identity = 122/265 (46.04%), Postives = 184/265 (69.43%), Query Frame = 1


Query: 218 DNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKV 277
           +N    T+E  D  C++ K++EA++++++LE +   VD  R L L   CGE  +LEEA+V
Sbjct: 74  NNHQSVTIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARV 133

Query: 278 VCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGL 337
           V + +    TPL   +Y+ ++EMYS C S DDA  +FN+MP RN  +W TMI  LAKNG 
Sbjct: 134 VHDCI----TPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGE 193

Query: 338 GEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYV 397
           GE AID+F  F + G + D ++F  VF AC  +GD++EG+LHFESM ++YG++ SM+ YV
Sbjct: 194 GERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYRDYGMVLSMEDYV 253

Query: 398 SIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPS 457
           ++I+ML + G++DEAL+F+E+M  EP V++WE +MN+    G +ELGDR  EL+++LD S
Sbjct: 254 NVIEMLAACGHLDEALDFVERMTVEPSVEMWETLMNLCWVQGYLELGDRFAELIKKLDAS 313

Query: 458 RLNEQSKAGHLPIKASDLAKEREKK 483
           R++++S AG +  KASD A E+ K+
Sbjct: 314 RMSKESNAGLVAAKASDSAMEKLKE 334

[Close]

BLAST of Cp4.1LG01g16790 vs. Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.1e-65
Identity = 122/255 (47.84%), Postives = 170/255 (66.67%), Query Frame = 1


Query: 224 TLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYVI 283
           T+E  D  C +G  +EAV++L+ LE +   +DL R L L   CG+  +LE A+VV   +I
Sbjct: 87  TIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECII 146

Query: 284 KSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAID 343
              +P  V   N I+EMYS C S+DDA  +F +MP  N  +   M+     NG GE+AID
Sbjct: 147 ALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAID 206

Query: 344 LFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDML 403
           LF  FK+ G + +G++F  VFS C++ GDV EG L F++M + YGI+PSM+HY S+  ML
Sbjct: 207 LFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSMEHYHSVTKML 266

Query: 404 GSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPSRLNEQS 463
            + G++DEAL F+E+MP EP VD+WE +MN+SR HG +ELGDRC ELVE+LD +RL++ S
Sbjct: 267 ATSGHLDEALNFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKLDATRLDKVS 326

Query: 464 KAGHLPIKASDLAKE 479
            AG +  KASD  K+
Sbjct: 327 SAGLVATKASDFVKK 341

[Close]

BLAST of Cp4.1LG01g16790 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 7.0e-38
Identity = 83/224 (37.05%), Postives = 134/224 (59.82%), Query Frame = 1


Query: 233 REGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYVIKSQTPLKVS 292
           R    ++A+++ + + +         Y +L  AC     LE+ K V  Y+IKS   L   
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 293 TYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAIDLFYEFKKTG 352
             N +L+MY+K GS+ DA  IF+++  R++ SW++++T  A++G G++A+  F E ++ G
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG 358

Query: 353 LRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDMLGSVGYVDEA 412
           +R +   F+ V +ACS  G +DEG  ++E M K+ GI+P   HYV+++D+LG  G ++ A
Sbjct: 359 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRA 418

Query: 413 LEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDP 457
           L FIE+MP EP   IW+A++N  R H   ELG    E V +LDP
Sbjct: 419 LRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDP 461

[Close]

BLAST of Cp4.1LG01g16790 vs. TrEMBL
Match: A0A0A0M061_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659600 PE=4 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 2.6e-169
Identity = 326/461 (70.72%), Postives = 356/461 (77.22%), Query Frame = 1


Query: 45  REEYQND--------NGYHADNSLQSYQSHSGFSSDSQSPGYYQHHAQSASFQISSWPNQ 104
           RE +QN         NG   +N  +   +    S +  +P  +     +    +    +Q
Sbjct: 164 RETFQNTHHASPVAPNGNFIENGYKGGVAQDHNSYNGSTPRNFVDMNNNVVCGVDRSMSQ 223

Query: 105 NILLERRENLTAYNGF--NNGELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYHNSMPGL 164
           N  L  RE  +AYNG+  NN   QQNNY VSGQN                  + N M G 
Sbjct: 224 NNQLGHREIFSAYNGYGYNNEATQQNNYGVSGQNL-----------------HDNPMSGP 283

Query: 165 NNHIPISRQYEQNSMSQPHPQGQYQQGGSVELYQPNPDTIQSRTIGTQVLKNTNADEEIG 224
           NNHIP+SRQYEQNS+   HPQGQY QG SVE YQPN DT Q+  IGTQ+L N NA+EEIG
Sbjct: 284 NNHIPLSRQYEQNSIPLQHPQGQYHQGSSVEQYQPNTDTNQNSMIGTQLLNNVNANEEIG 343

Query: 225 VTKDNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEE 284
             KD   GG LE+LDEFC+EGKLKEAVQILE+LEKQ+IPVDLSRYL+LMNACGEARSLEE
Sbjct: 344 EPKDCQDGGPLEKLDEFCKEGKLKEAVQILEVLEKQHIPVDLSRYLDLMNACGEARSLEE 403

Query: 285 AKVVCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAK 344
           AKVVCNYVIKSQT +KVSTYNKILEMYSKCGSMDDAY IFNKMPSRN+TSWDTMITWLAK
Sbjct: 404 AKVVCNYVIKSQTHVKVSTYNKILEMYSKCGSMDDAYTIFNKMPSRNITSWDTMITWLAK 463

Query: 345 NGLGEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQ 404
           NGLGEDAIDLFYEFKK GLR DGKMFIGVFSACSVLGD DEGMLHFESMTKNYGI PSM 
Sbjct: 464 NGLGEDAIDLFYEFKKAGLRPDGKMFIGVFSACSVLGDADEGMLHFESMTKNYGITPSMH 523

Query: 405 HYVSIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQL 464
           HYVSI+DMLGS+G+VDEA+EFIEKMP EPGVDIWE MMNISRAHGLMELGDRCFELVE L
Sbjct: 524 HYVSIVDMLGSIGFVDEAVEFIEKMPLEPGVDIWETMMNISRAHGLMELGDRCFELVEHL 583

Query: 465 DPSRLNEQSKAGHLPIKASDLAKEREKKKLANRNLLEVRSR 496
           D SRLNEQSKAG LP+KASDL KEREKKKLANRNLLEVRSR
Sbjct: 584 DSSRLNEQSKAGLLPVKASDLEKEREKKKLANRNLLEVRSR 607

[Close]

BLAST of Cp4.1LG01g16790 vs. TrEMBL
Match: M5XL53_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003215mg PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 7.8e-121
Identity = 238/422 (56.40%), Postives = 296/422 (70.14%), Query Frame = 1


Query: 100 LERRENLTAYNGFNN----GELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYHNSMPGLN 159
           +E R+N  A+    N    G L QN  +   QN    Q  +  +   + + + NS  G  
Sbjct: 50  IEVRQNPNAFGLQGNLGFQGNLNQNYIQHFAQNQ---QNLNGYYTRNDVMRHQNSSYGQY 109

Query: 160 NHIPISRQYEQNSM---SQPHPQ----------GQYQQGGS--------VELYQPNPDTI 219
              P   QY+QN +   +QP+P           GQYQQ  +        V  YQ NPD  
Sbjct: 110 QQNPSCGQYQQNPIYGQNQPNPSYGKYHQAPSCGQYQQAPTSYGQQSQHVGQYQTNPDPF 169

Query: 220 QSRTIGTQVLKNTNADEE-IGVTKDNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIP 279
           Q+  + +QV   + ++ + I  ++ +PY GTLEELD+FC+EGK+KEAV+IL MLEKQ + 
Sbjct: 170 QNTIVDSQVASESKSERKLIEASESSPYSGTLEELDKFCKEGKVKEAVEILGMLEKQQVQ 229

Query: 280 VDLSRYLNLMNACGEARSLEEAKVVCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMI 339
           VDL  Y  LM ACGEA++LEEAK V   + +  +PL VSTYN+ILEMYSKCGSMD  +M+
Sbjct: 230 VDLHLYFQLMQACGEAKALEEAKFVHENITRLLSPLNVSTYNRILEMYSKCGSMDSTFMV 289

Query: 340 FNKMPSRNLTSWDTMITWLAKNGLGEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDV 399
           FN+MP+RNLTSWD MI WLAKNGLGEDAIDLF EFKK GL+ DG+MFIGVF ACSVLGD 
Sbjct: 290 FNQMPNRNLTSWDIMIAWLAKNGLGEDAIDLFTEFKKAGLKPDGQMFIGVFYACSVLGDT 349

Query: 400 DEGMLHFESMTKNYGIIPSMQHYVSIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMN 459
            EG+LHFESM+K+YGI+PSM HYVS++DMLGS GY++EALEFIEKMP EP VD+W+ +MN
Sbjct: 350 TEGLLHFESMSKDYGIVPSMDHYVSVVDMLGSTGYLEEALEFIEKMPLEPNVDVWKTLMN 409

Query: 460 ISRAHGLMELGDRCFELVEQLDPSRLNEQSKAGHLPIKASDLAKEREKKKLANRNLLEVR 496
           + R HG +ELGDRC ELVEQLD S LNEQSKAG +P+K SDL KE+EKKKLA +NLLEVR
Sbjct: 410 LCRVHGQLELGDRCAELVEQLDASSLNEQSKAGLVPVKDSDLVKEKEKKKLAAQNLLEVR 468

[Close]

BLAST of Cp4.1LG01g16790 vs. TrEMBL
Match: F6H3U1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05070 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.9e-119
Identity = 243/453 (53.64%), Postives = 309/453 (68.21%), Query Frame = 1


Query: 50  NDNGYHADNSLQSYQSHSGFSSDSQS-PGYYQHHAQSASFQISSWPNQNILLERRENLTA 109
           N NGY   N  +S Q  + F   +++    Y    ++   Q  +   Q I+ E   +L  
Sbjct: 231 NINGYCGQNYGESLQKSNDFYGQNRNVQNSYYSEGRAEVNQNRNGNCQQIISETLGDLNR 290

Query: 110 YNGFNNGELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYH-NSMPGLNNHIPISRQYEQN 169
             G N  + QQ+      +N    Q     +   N   Y  N   G     P   QY+QN
Sbjct: 291 TYGENIRQFQQSPSGYHRENLQQYQPSENMYYRENVGQYQQNPNVGQYQQNPNIGQYQQN 350

Query: 170 ---SMSQPHPQ-GQYQQGGSVELYQPNPDTIQSRTIGTQVLKNTNAD-EEIGVTKDNPYG 229
              +  Q +P   QYQQ  +V  YQ N +  Q+  +G+    N   D E +   + + Y 
Sbjct: 351 PNVAQYQQNPNVAQYQQNPNVAQYQTNSNEFQNSMVGSPKSSNYKPDGESLEAAESSQYS 410

Query: 230 GTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYV 289
           GTLEE+D+FC++GK+KEA+++L +LEKQ+ PVDL RYL LM ACGEA++L+EAK V   +
Sbjct: 411 GTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKACGEAKALQEAKAVHESL 470

Query: 290 IKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAI 349
           IKS +PLKVSTYN+ILEMYSKCGSMDDAY +F KMP RNLTSWDTMITW AKN LGE+AI
Sbjct: 471 IKSVSPLKVSTYNRILEMYSKCGSMDDAYAVFKKMPERNLTSWDTMITWFAKNDLGEEAI 530

Query: 350 DLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDM 409
           DLF +FK++GL+ DG+MFIGVF ACSVLGDV EGMLHF SM+K+YGI+PSM+HY S++DM
Sbjct: 531 DLFIQFKESGLKPDGQMFIGVFMACSVLGDVIEGMLHFNSMSKDYGIVPSMKHYASMVDM 590

Query: 410 LGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPSRLNEQ 469
           LG+ GY+DEALEF+EKMP EP VD+WE +MNI R  G ME+GDRC ELVE L+PSRL EQ
Sbjct: 591 LGNSGYLDEALEFVEKMPLEPSVDVWETLMNICRVQGNMEIGDRCAELVEHLEPSRLTEQ 650

Query: 470 SKAGHLPIKASDLAKEREKKKLANRNLLEVRSR 496
           SKAG +P+KASDL KE+EKKKLA++NLLEVRSR
Sbjct: 651 SKAGLVPVKASDLEKEKEKKKLASQNLLEVRSR 683

[Close]

BLAST of Cp4.1LG01g16790 vs. TrEMBL
Match: A5AQE7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020760 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.2e-118
Identity = 242/453 (53.42%), Postives = 308/453 (67.99%), Query Frame = 1


Query: 50  NDNGYHADNSLQSYQSHSGFSSDSQS-PGYYQHHAQSASFQISSWPNQNILLERRENLTA 109
           N NGY   N  +S Q  + F   +++    Y    ++   Q  +   Q I+ E   +L  
Sbjct: 231 NINGYCGQNYGESLQKSNDFYGQNRNVQNSYYSEGRAEVNQNRNGNCQQIISETLGDLNR 290

Query: 110 YNGFNNGELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYH-NSMPGLNNHIPISRQYEQN 169
             G N  + QQ+      +N    Q     +   N   Y  N   G     P   QY+QN
Sbjct: 291 TYGENIRQFQQSPSGYHRENLQQYQPSENMYYRENVGQYQQNPNVGQYQQNPNIGQYQQN 350

Query: 170 ---SMSQPHPQ-GQYQQGGSVELYQPNPDTIQSRTIGTQVLKNTNAD-EEIGVTKDNPYG 229
              +  Q +P   QYQQ  +V  YQ N +  Q+  +G+    N   D E +   + + Y 
Sbjct: 351 PNVAQYQQNPNVAQYQQNPNVAQYQTNSNEFQNSMVGSPKSSNYKPDGESLEAAESSQYS 410

Query: 230 GTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYV 289
           GTLEE+D+FC++GK+KEA+++L +LEKQ+ PVDL RYL LM ACGEA++L+EAK V   +
Sbjct: 411 GTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKACGEAKALQEAKAVHESL 470

Query: 290 IKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAI 349
           IKS +PLKVSTYN+ILEMYSKCGSMDDAY +F KMP RNLTSWDTMITW AKN LGE+AI
Sbjct: 471 IKSVSPLKVSTYNRILEMYSKCGSMDDAYAVFKKMPERNLTSWDTMITWFAKNDLGEEAI 530

Query: 350 DLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDM 409
           DLF +FK++GL+ D +MFIGVF ACSVLGDV EGMLHF SM+K+YGI+PSM+HY S++DM
Sbjct: 531 DLFIQFKESGLKPDXQMFIGVFMACSVLGDVIEGMLHFNSMSKDYGIVPSMKHYASMVDM 590

Query: 410 LGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPSRLNEQ 469
           LG+ GY+DEALEF+EKMP EP VD+WE +MNI R  G ME+GDRC ELVE L+PSRL EQ
Sbjct: 591 LGNSGYLDEALEFVEKMPLEPSVDVWETLMNICRVQGNMEIGDRCAELVEHLEPSRLTEQ 650

Query: 470 SKAGHLPIKASDLAKEREKKKLANRNLLEVRSR 496
           SKAG +P+KASDL KE+EKKKLA++NLLEVRSR
Sbjct: 651 SKAGLVPVKASDLEKEKEKKKLASQNLLEVRSR 683

[Close]

BLAST of Cp4.1LG01g16790 vs. TrEMBL
Match: K7L629_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G113100 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 6.0e-113
Identity = 258/546 (47.25%), Postives = 335/546 (61.36%), Query Frame = 1


Query: 1   MCKKRAAILARRSLIALCNIRSSCSSSVSNKVLNQVRNLSIASEREEYQNDNGYHADNSL 60
           M  KRA+ +    L+ LC  +  CS    +K L+ +  +S A+ER + Q   GY  D+S 
Sbjct: 1   MSSKRASSVTVSCLLKLC--KGCCS----HKGLSTLSAVSTAAERTDLQFSGGYQNDDSS 60

Query: 61  QSYQSHSGFSSDSQS------------PGYY-QHHAQSASF---QISSWPNQNILLERRE 120
              Q+  GF  +SQ+            P Y  Q +A   S+   QI+   + N+      
Sbjct: 61  GYQQNRVGFYLESQNKADSYELLNKQRPDYVSQANAGQNSYGAGQIADGGHINVTRNVHN 120

Query: 121 NLTAYNGFNNGELQQNNYEVSGQ------NSWGTQIESRQFVH--------GNSLNYHN- 180
           NL  +NG  NG   Q + ++  +      N+WG+ + +  FV         G  +   N 
Sbjct: 121 NLVGHNGSVNGYFGQGDMKMQQKVGAGVDNAWGSGMHANPFVEKHDWTQEPGQGMQSPNA 180

Query: 181 -SMPG-----------LNNHIPISRQYEQNSMSQPH---PQ----GQYQQGGSVELYQPN 240
            S PG           LN +I   +Q +       H   PQ    GQ QQ      Y PN
Sbjct: 181 YSSPGPLESQGNLRGDLNQNIDHFQQPQNVHYKGSHEMRPQYPGYGQSQQSLKDGQYLPN 240

Query: 241 PDTIQSRTIGTQVLKNTNAD-EEIGVTKDNPYGGTLEELDEFCREGKLKEAVQILEMLEK 300
            +T Q   +G+ +  N N D E    + D+PY GTLEELD FC EG +KEAV++LE+LEK
Sbjct: 241 LNTAQRSVVGSHLSSNANPDGESAKASNDSPYRGTLEELDNFCIEGNVKEAVEVLELLEK 300

Query: 301 QNIPVDLSRYLNLMNACGEARSLEEAKVVCNYVIKSQTPLKVSTYNKILEMYSKCGSMDD 360
            +IPVDL RYL LM+ CGE +SLEEAK V  + ++  +PL+VSTYN+ILEMY +CGS+DD
Sbjct: 301 LDIPVDLPRYLQLMHQCGENKSLEEAKNVHRHALQHLSPLQVSTYNRILEMYLECGSVDD 360

Query: 361 AYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAIDLFYEFKKTGLRIDGKMFIGVFSACSV 420
           A  IFN MP RNLT+WDTMIT LAKNG  ED+IDLF +FK  GL+ DG+MFIGV  AC +
Sbjct: 361 ALNIFNNMPERNLTTWDTMITQLAKNGFAEDSIDLFTQFKNLGLKPDGQMFIGVLFACGM 420

Query: 421 LGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDMLGSVGYVDEALEFIEKMPFEPGVDIWE 480
           LGD+DEGM HFESM K+YGI+PSM H+VS++DM+GS+G++DEA EFIEKMP +P  DIWE
Sbjct: 421 LGDIDEGMQHFESMNKDYGIVPSMTHFVSVVDMIGSIGHLDEAFEFIEKMPMKPSADIWE 480

Query: 481 AMMNISRAHGLMELGDRCFELVEQLDPSRLNEQSKAGHLPIKASDLAKEREKKKLANRNL 496
            +MN+ R HG   LGD C ELVEQLD S LNEQSKAG +P+KASDL KE+EK+ L N+NL
Sbjct: 481 TLMNLCRVHGNTGLGDCCAELVEQLDSSCLNEQSKAGLVPVKASDLTKEKEKRTLTNKNL 540

[Close]

BLAST of Cp4.1LG01g16790 vs. TAIR10
Match: AT4G32450.1 (AT4G32450.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 291.6 bits (745), Expect = 1.1e-78
Identity = 176/404 (43.56%), Postives = 234/404 (57.92%), Query Frame = 1


Query: 95  NQNILLERRENLTAYNGFNNGE-----LQQNNYE-----VSGQNSWGTQIESRQFVHGNS 154
           N N +     ++   NGFN GE      QQN+YE     VSGQN       + +F     
Sbjct: 40  NGNPMDNSSHHIGYVNGFNGGEQSLGGFQQNSYEQSLNPVSGQNP------TNRFYQ--- 99

Query: 155 LNYHNSMPGLNNHIPISRQYEQNSMSQPHPQGQYQQGGSVELYQPNPDTIQSRTIGTQVL 214
            N +N       H  I  Q  QN  S          G  V   Q N              
Sbjct: 100 -NGYNRNQSYGEHSEIINQRNQNWQSSDGCSSYGTTGNGVP--QEN-------------- 159

Query: 215 KNTNADEEIGVTKDNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMN 274
            NT  +      +D+    +L+ELD  CREGK+K+AV+I++    +   VDL R   +  
Sbjct: 160 -NTGGNH---FQQDHSGHSSLDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQ 219

Query: 275 ACGEARSLEEAKVVCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTS 334
            CG+A++L+EAKVV  ++  S     +S YN I+EMYS CGS++DA  +FN MP RNL +
Sbjct: 220 LCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLET 279

Query: 335 WDTMITWLAKNGLGEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMT 394
           W  +I   AKNG GEDAID F  FK+ G + DG+MF  +F AC VLGD++EG+LHFESM 
Sbjct: 280 WCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMY 339

Query: 395 KNYGIIPSMQHYVSIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELG 454
           K YGIIP M+HYVS++ ML   GY+DEAL F+E M  EP VD+WE +MN+SR HG + LG
Sbjct: 340 KEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVESM--EPNVDLWETLMNLSRVHGDLILG 399

Query: 455 DRCFELVEQLDPSRLNEQSKAGHLPIKASDLAKEREKKKLANRN 489
           DRC ++VEQLD SRLN++SKAG +P+K+SDL KE+ ++     N
Sbjct: 400 DRCQDMVEQLDASRLNKESKAGLVPVKSSDLVKEKLQRMAKGPN 411

[Close]

BLAST of Cp4.1LG01g16790 vs. TAIR10
Match: AT2G25580.1 (AT2G25580.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 288.5 bits (737), Expect = 9.5e-78
Identity = 136/259 (52.51%), Postives = 188/259 (72.59%), Query Frame = 1


Query: 225 LEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYVIK 284
           +EE D FC+ GK+K+A+  +++L   N  VDLSR L L   CGEA  L+EAK V   +  
Sbjct: 223 IEEYDAFCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISA 282

Query: 285 SQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAIDL 344
           S + L +S+ + +LEMYS CG  ++A  +F KM  +NL +W  +I   AKNG GEDAID+
Sbjct: 283 SVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDM 342

Query: 345 FYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDMLG 404
           F  FK+ G   DG++F G+F AC +LGDVDEG+LHFESM+++YGI PS++ YVS+++M  
Sbjct: 343 FSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYA 402

Query: 405 SVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPSRLNEQSK 464
             G++DEALEF+E+MP EP VD+WE +MN+SR HG +ELGD C E+VE LDP+RLN+QS+
Sbjct: 403 LPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSR 462

Query: 465 AGHLPIKASDLAKEREKKK 484
            G +P+KASD+ KE  KK+
Sbjct: 463 EGFIPVKASDVEKESLKKR 481

[Close]

BLAST of Cp4.1LG01g16790 vs. TAIR10
Match: AT2G34370.1 (AT2G34370.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 251.9 bits (642), Expect = 9.9e-67
Identity = 122/265 (46.04%), Postives = 184/265 (69.43%), Query Frame = 1


Query: 218 DNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKV 277
           +N    T+E  D  C++ K++EA++++++LE +   VD  R L L   CGE  +LEEA+V
Sbjct: 74  NNHQSVTIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARV 133

Query: 278 VCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGL 337
           V + +    TPL   +Y+ ++EMYS C S DDA  +FN+MP RN  +W TMI  LAKNG 
Sbjct: 134 VHDCI----TPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGE 193

Query: 338 GEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYV 397
           GE AID+F  F + G + D ++F  VF AC  +GD++EG+LHFESM ++YG++ SM+ YV
Sbjct: 194 GERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYRDYGMVLSMEDYV 253

Query: 398 SIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPS 457
           ++I+ML + G++DEAL+F+E+M  EP V++WE +MN+    G +ELGDR  EL+++LD S
Sbjct: 254 NVIEMLAACGHLDEALDFVERMTVEPSVEMWETLMNLCWVQGYLELGDRFAELIKKLDAS 313

Query: 458 RLNEQSKAGHLPIKASDLAKEREKK 483
           R++++S AG +  KASD A E+ K+
Sbjct: 314 RMSKESNAGLVAAKASDSAMEKLKE 334

[Close]

BLAST of Cp4.1LG01g16790 vs. TAIR10
Match: AT1G29710.1 (AT1G29710.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 250.4 bits (638), Expect = 2.9e-66
Identity = 122/255 (47.84%), Postives = 170/255 (66.67%), Query Frame = 1


Query: 224 TLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYVI 283
           T+E  D  C +G  +EAV++L+ LE +   +DL R L L   CG+  +LE A+VV   +I
Sbjct: 87  TIETFDSLCIQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECII 146

Query: 284 KSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAID 343
              +P  V   N I+EMYS C S+DDA  +F +MP  N  +   M+     NG GE+AID
Sbjct: 147 ALVSPCDVGARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAID 206

Query: 344 LFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDML 403
           LF  FK+ G + +G++F  VFS C++ GDV EG L F++M + YGI+PSM+HY S+  ML
Sbjct: 207 LFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSMEHYHSVTKML 266

Query: 404 GSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPSRLNEQS 463
            + G++DEAL F+E+MP EP VD+WE +MN+SR HG +ELGDRC ELVE+LD +RL++ S
Sbjct: 267 ATSGHLDEALNFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKLDATRLDKVS 326

Query: 464 KAGHLPIKASDLAKE 479
            AG +  KASD  K+
Sbjct: 327 SAGLVATKASDFVKK 341

[Close]

BLAST of Cp4.1LG01g16790 vs. TAIR10
Match: AT3G24000.1 (AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 160.2 bits (404), Expect = 3.9e-39
Identity = 83/224 (37.05%), Postives = 134/224 (59.82%), Query Frame = 1


Query: 233 REGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYVIKSQTPLKVS 292
           R    ++A+++ + + +         Y +L  AC     LE+ K V  Y+IKS   L   
Sbjct: 239 RRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 293 TYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAIDLFYEFKKTG 352
             N +L+MY+K GS+ DA  IF+++  R++ SW++++T  A++G G++A+  F E ++ G
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG 358

Query: 353 LRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDMLGSVGYVDEA 412
           +R +   F+ V +ACS  G +DEG  ++E M K+ GI+P   HYV+++D+LG  G ++ A
Sbjct: 359 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRA 418

Query: 413 LEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDP 457
           L FIE+MP EP   IW+A++N  R H   ELG    E V +LDP
Sbjct: 419 LRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDP 461

[Close]

BLAST of Cp4.1LG01g16790 vs. NCBI nr
Match: gi|659086007|ref|XP_008443720.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Cucumis melo])

HSP 1 Score: 640.2 bits (1650), Expect = 3.7e-180
Identity = 335/461 (72.67%), Postives = 370/461 (80.26%), Query Frame = 1


Query: 45  REEYQND--------NGYHADNSLQSYQSHSGFSSDSQSPGYYQHHAQSASFQISSWPNQ 104
           RE YQN         NG   +N      +    S +  +P  +   + +   ++    + 
Sbjct: 164 RETYQNTHHTSPVAPNGNFIENGYNGVVAQDHNSYNGNTPRNFVEISNNVVREVDRSTSP 223

Query: 105 NILLERRENLTAYNGF--NNGELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYHNSMPGL 164
           N  L  RE  +AYNG+  +N   QQN Y +SGQNSWGT  ES+Q++HG  L +HN M G 
Sbjct: 224 NNQLGPREIFSAYNGYGYSNEATQQNIYGISGQNSWGTWRESKQYLHGTGLKHHNPMSGP 283

Query: 165 NNHIPISRQYEQNSMSQPHPQGQYQQGGSVELYQPNPDTIQSRTIGTQVLKNTNADEEIG 224
           NNHIP+SRQYEQNS+ Q +PQGQY QG SVE YQPNPDT Q+  IG QVL N NA+EEIG
Sbjct: 284 NNHIPLSRQYEQNSIPQQYPQGQYHQGSSVEQYQPNPDTNQNYMIGNQVLYNVNANEEIG 343

Query: 225 VTKDNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEE 284
            T+D   GG LE+LDEFC+EG LKEAV+ILE+LEKQ+IPVDLSRYL+LMNACGEARSLEE
Sbjct: 344 KTRDRQQGGPLEKLDEFCKEGNLKEAVEILEVLEKQHIPVDLSRYLDLMNACGEARSLEE 403

Query: 285 AKVVCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAK 344
           AK VCNYVIKSQT +KVSTYNKILEMYSKCGSMDDAY IFNKMPSRN+TSWDTMITWLAK
Sbjct: 404 AKAVCNYVIKSQTHVKVSTYNKILEMYSKCGSMDDAYTIFNKMPSRNITSWDTMITWLAK 463

Query: 345 NGLGEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQ 404
           NGLGEDAIDLFYEFKK GLR DGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGI PSM 
Sbjct: 464 NGLGEDAIDLFYEFKKAGLRPDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGITPSMH 523

Query: 405 HYVSIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQL 464
           HYVSI+DMLGS G+VDEALEFIEKMP EPGVDIWE MMNI+RAHGLMELGDRCFELVE L
Sbjct: 524 HYVSIVDMLGSTGFVDEALEFIEKMPLEPGVDIWETMMNIARAHGLMELGDRCFELVEHL 583

Query: 465 DPSRLNEQSKAGHLPIKASDLAKEREKKKLANRNLLEVRSR 496
           DPSRLNEQSKAG LPIKASDL KEREKKKLANRNLLEVRSR
Sbjct: 584 DPSRLNEQSKAGLLPIKASDLEKEREKKKLANRNLLEVRSR 624

[Close]

BLAST of Cp4.1LG01g16790 vs. NCBI nr
Match: gi|778664160|ref|XP_011660234.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Cucumis sativus])

HSP 1 Score: 603.6 bits (1555), Expect = 3.8e-169
Identity = 326/461 (70.72%), Postives = 356/461 (77.22%), Query Frame = 1


Query: 45  REEYQND--------NGYHADNSLQSYQSHSGFSSDSQSPGYYQHHAQSASFQISSWPNQ 104
           RE +QN         NG   +N  +   +    S +  +P  +     +    +    +Q
Sbjct: 164 RETFQNTHHASPVAPNGNFIENGYKGGVAQDHNSYNGSTPRNFVDMNNNVVCGVDRSMSQ 223

Query: 105 NILLERRENLTAYNGF--NNGELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYHNSMPGL 164
           N  L  RE  +AYNG+  NN   QQNNY VSGQN                  + N M G 
Sbjct: 224 NNQLGHREIFSAYNGYGYNNEATQQNNYGVSGQNL-----------------HDNPMSGP 283

Query: 165 NNHIPISRQYEQNSMSQPHPQGQYQQGGSVELYQPNPDTIQSRTIGTQVLKNTNADEEIG 224
           NNHIP+SRQYEQNS+   HPQGQY QG SVE YQPN DT Q+  IGTQ+L N NA+EEIG
Sbjct: 284 NNHIPLSRQYEQNSIPLQHPQGQYHQGSSVEQYQPNTDTNQNSMIGTQLLNNVNANEEIG 343

Query: 225 VTKDNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEE 284
             KD   GG LE+LDEFC+EGKLKEAVQILE+LEKQ+IPVDLSRYL+LMNACGEARSLEE
Sbjct: 344 EPKDCQDGGPLEKLDEFCKEGKLKEAVQILEVLEKQHIPVDLSRYLDLMNACGEARSLEE 403

Query: 285 AKVVCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAK 344
           AKVVCNYVIKSQT +KVSTYNKILEMYSKCGSMDDAY IFNKMPSRN+TSWDTMITWLAK
Sbjct: 404 AKVVCNYVIKSQTHVKVSTYNKILEMYSKCGSMDDAYTIFNKMPSRNITSWDTMITWLAK 463

Query: 345 NGLGEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQ 404
           NGLGEDAIDLFYEFKK GLR DGKMFIGVFSACSVLGD DEGMLHFESMTKNYGI PSM 
Sbjct: 464 NGLGEDAIDLFYEFKKAGLRPDGKMFIGVFSACSVLGDADEGMLHFESMTKNYGITPSMH 523

Query: 405 HYVSIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQL 464
           HYVSI+DMLGS+G+VDEA+EFIEKMP EPGVDIWE MMNISRAHGLMELGDRCFELVE L
Sbjct: 524 HYVSIVDMLGSIGFVDEAVEFIEKMPLEPGVDIWETMMNISRAHGLMELGDRCFELVEHL 583

Query: 465 DPSRLNEQSKAGHLPIKASDLAKEREKKKLANRNLLEVRSR 496
           D SRLNEQSKAG LP+KASDL KEREKKKLANRNLLEVRSR
Sbjct: 584 DSSRLNEQSKAGLLPVKASDLEKEREKKKLANRNLLEVRSR 607

[Close]

BLAST of Cp4.1LG01g16790 vs. NCBI nr
Match: gi|596286417|ref|XP_007225613.1| (hypothetical protein PRUPE_ppa003215mg [Prunus persica])

HSP 1 Score: 442.6 bits (1137), Expect = 1.1e-120
Identity = 238/422 (56.40%), Postives = 296/422 (70.14%), Query Frame = 1


Query: 100 LERRENLTAYNGFNN----GELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYHNSMPGLN 159
           +E R+N  A+    N    G L QN  +   QN    Q  +  +   + + + NS  G  
Sbjct: 50  IEVRQNPNAFGLQGNLGFQGNLNQNYIQHFAQNQ---QNLNGYYTRNDVMRHQNSSYGQY 109

Query: 160 NHIPISRQYEQNSM---SQPHPQ----------GQYQQGGS--------VELYQPNPDTI 219
              P   QY+QN +   +QP+P           GQYQQ  +        V  YQ NPD  
Sbjct: 110 QQNPSCGQYQQNPIYGQNQPNPSYGKYHQAPSCGQYQQAPTSYGQQSQHVGQYQTNPDPF 169

Query: 220 QSRTIGTQVLKNTNADEE-IGVTKDNPYGGTLEELDEFCREGKLKEAVQILEMLEKQNIP 279
           Q+  + +QV   + ++ + I  ++ +PY GTLEELD+FC+EGK+KEAV+IL MLEKQ + 
Sbjct: 170 QNTIVDSQVASESKSERKLIEASESSPYSGTLEELDKFCKEGKVKEAVEILGMLEKQQVQ 229

Query: 280 VDLSRYLNLMNACGEARSLEEAKVVCNYVIKSQTPLKVSTYNKILEMYSKCGSMDDAYMI 339
           VDL  Y  LM ACGEA++LEEAK V   + +  +PL VSTYN+ILEMYSKCGSMD  +M+
Sbjct: 230 VDLHLYFQLMQACGEAKALEEAKFVHENITRLLSPLNVSTYNRILEMYSKCGSMDSTFMV 289

Query: 340 FNKMPSRNLTSWDTMITWLAKNGLGEDAIDLFYEFKKTGLRIDGKMFIGVFSACSVLGDV 399
           FN+MP+RNLTSWD MI WLAKNGLGEDAIDLF EFKK GL+ DG+MFIGVF ACSVLGD 
Sbjct: 290 FNQMPNRNLTSWDIMIAWLAKNGLGEDAIDLFTEFKKAGLKPDGQMFIGVFYACSVLGDT 349

Query: 400 DEGMLHFESMTKNYGIIPSMQHYVSIIDMLGSVGYVDEALEFIEKMPFEPGVDIWEAMMN 459
            EG+LHFESM+K+YGI+PSM HYVS++DMLGS GY++EALEFIEKMP EP VD+W+ +MN
Sbjct: 350 TEGLLHFESMSKDYGIVPSMDHYVSVVDMLGSTGYLEEALEFIEKMPLEPNVDVWKTLMN 409

Query: 460 ISRAHGLMELGDRCFELVEQLDPSRLNEQSKAGHLPIKASDLAKEREKKKLANRNLLEVR 496
           + R HG +ELGDRC ELVEQLD S LNEQSKAG +P+K SDL KE+EKKKLA +NLLEVR
Sbjct: 410 LCRVHGQLELGDRCAELVEQLDASSLNEQSKAGLVPVKDSDLVKEKEKKKLAAQNLLEVR 468

[Close]

BLAST of Cp4.1LG01g16790 vs. NCBI nr
Match: gi|225430210|ref|XP_002282464.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Vitis vinifera])

HSP 1 Score: 438.0 bits (1125), Expect = 2.8e-119
Identity = 243/453 (53.64%), Postives = 309/453 (68.21%), Query Frame = 1


Query: 50  NDNGYHADNSLQSYQSHSGFSSDSQS-PGYYQHHAQSASFQISSWPNQNILLERRENLTA 109
           N NGY   N  +S Q  + F   +++    Y    ++   Q  +   Q I+ E   +L  
Sbjct: 231 NINGYCGQNYGESLQKSNDFYGQNRNVQNSYYSEGRAEVNQNRNGNCQQIISETLGDLNR 290

Query: 110 YNGFNNGELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYH-NSMPGLNNHIPISRQYEQN 169
             G N  + QQ+      +N    Q     +   N   Y  N   G     P   QY+QN
Sbjct: 291 TYGENIRQFQQSPSGYHRENLQQYQPSENMYYRENVGQYQQNPNVGQYQQNPNIGQYQQN 350

Query: 170 ---SMSQPHPQ-GQYQQGGSVELYQPNPDTIQSRTIGTQVLKNTNAD-EEIGVTKDNPYG 229
              +  Q +P   QYQQ  +V  YQ N +  Q+  +G+    N   D E +   + + Y 
Sbjct: 351 PNVAQYQQNPNVAQYQQNPNVAQYQTNSNEFQNSMVGSPKSSNYKPDGESLEAAESSQYS 410

Query: 230 GTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYV 289
           GTLEE+D+FC++GK+KEA+++L +LEKQ+ PVDL RYL LM ACGEA++L+EAK V   +
Sbjct: 411 GTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKACGEAKALQEAKAVHESL 470

Query: 290 IKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAI 349
           IKS +PLKVSTYN+ILEMYSKCGSMDDAY +F KMP RNLTSWDTMITW AKN LGE+AI
Sbjct: 471 IKSVSPLKVSTYNRILEMYSKCGSMDDAYAVFKKMPERNLTSWDTMITWFAKNDLGEEAI 530

Query: 350 DLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDM 409
           DLF +FK++GL+ DG+MFIGVF ACSVLGDV EGMLHF SM+K+YGI+PSM+HY S++DM
Sbjct: 531 DLFIQFKESGLKPDGQMFIGVFMACSVLGDVIEGMLHFNSMSKDYGIVPSMKHYASMVDM 590

Query: 410 LGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPSRLNEQ 469
           LG+ GY+DEALEF+EKMP EP VD+WE +MNI R  G ME+GDRC ELVE L+PSRL EQ
Sbjct: 591 LGNSGYLDEALEFVEKMPLEPSVDVWETLMNICRVQGNMEIGDRCAELVEHLEPSRLTEQ 650

Query: 470 SKAGHLPIKASDLAKEREKKKLANRNLLEVRSR 496
           SKAG +P+KASDL KE+EKKKLA++NLLEVRSR
Sbjct: 651 SKAGLVPVKASDLEKEKEKKKLASQNLLEVRSR 683

[Close]

BLAST of Cp4.1LG01g16790 vs. NCBI nr
Match: gi|147856667|emb|CAN80315.1| (hypothetical protein VITISV_020760 [Vitis vinifera])

HSP 1 Score: 435.3 bits (1118), Expect = 1.8e-118
Identity = 242/453 (53.42%), Postives = 308/453 (67.99%), Query Frame = 1


Query: 50  NDNGYHADNSLQSYQSHSGFSSDSQS-PGYYQHHAQSASFQISSWPNQNILLERRENLTA 109
           N NGY   N  +S Q  + F   +++    Y    ++   Q  +   Q I+ E   +L  
Sbjct: 231 NINGYCGQNYGESLQKSNDFYGQNRNVQNSYYSEGRAEVNQNRNGNCQQIISETLGDLNR 290

Query: 110 YNGFNNGELQQNNYEVSGQNSWGTQIESRQFVHGNSLNYH-NSMPGLNNHIPISRQYEQN 169
             G N  + QQ+      +N    Q     +   N   Y  N   G     P   QY+QN
Sbjct: 291 TYGENIRQFQQSPSGYHRENLQQYQPSENMYYRENVGQYQQNPNVGQYQQNPNIGQYQQN 350

Query: 170 ---SMSQPHPQ-GQYQQGGSVELYQPNPDTIQSRTIGTQVLKNTNAD-EEIGVTKDNPYG 229
              +  Q +P   QYQQ  +V  YQ N +  Q+  +G+    N   D E +   + + Y 
Sbjct: 351 PNVAQYQQNPNVAQYQQNPNVAQYQTNSNEFQNSMVGSPKSSNYKPDGESLEAAESSQYS 410

Query: 230 GTLEELDEFCREGKLKEAVQILEMLEKQNIPVDLSRYLNLMNACGEARSLEEAKVVCNYV 289
           GTLEE+D+FC++GK+KEA+++L +LEKQ+ PVDL RYL LM ACGEA++L+EAK V   +
Sbjct: 411 GTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKACGEAKALQEAKAVHESL 470

Query: 290 IKSQTPLKVSTYNKILEMYSKCGSMDDAYMIFNKMPSRNLTSWDTMITWLAKNGLGEDAI 349
           IKS +PLKVSTYN+ILEMYSKCGSMDDAY +F KMP RNLTSWDTMITW AKN LGE+AI
Sbjct: 471 IKSVSPLKVSTYNRILEMYSKCGSMDDAYAVFKKMPERNLTSWDTMITWFAKNDLGEEAI 530

Query: 350 DLFYEFKKTGLRIDGKMFIGVFSACSVLGDVDEGMLHFESMTKNYGIIPSMQHYVSIIDM 409
           DLF +FK++GL+ D +MFIGVF ACSVLGDV EGMLHF SM+K+YGI+PSM+HY S++DM
Sbjct: 531 DLFIQFKESGLKPDXQMFIGVFMACSVLGDVIEGMLHFNSMSKDYGIVPSMKHYASMVDM 590

Query: 410 LGSVGYVDEALEFIEKMPFEPGVDIWEAMMNISRAHGLMELGDRCFELVEQLDPSRLNEQ 469
           LG+ GY+DEALEF+EKMP EP VD+WE +MNI R  G ME+GDRC ELVE L+PSRL EQ
Sbjct: 591 LGNSGYLDEALEFVEKMPLEPSVDVWETLMNICRVQGNMEIGDRCAELVEHLEPSRLTEQ 650

Query: 470 SKAGHLPIKASDLAKEREKKKLANRNLLEVRSR 496
           SKAG +P+KASDL KE+EKKKLA++NLLEVRSR
Sbjct: 651 SKAGLVPVKASDLEKEKEKKKLASQNLLEVRSR 683

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP346_ARATH	2.0e-77	43.56	Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidop...	[more]
PP170_ARATH	1.7e-76	52.51	Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN...	[more]
PP183_ARATH	1.8e-65	46.04	Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidop...	[more]
PPR63_ARATH	5.1e-65	47.84	Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidop...	[more]
PP252_ARATH	7.0e-38	37.05	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]

BLAST of Cp4.1LG01g16790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M061_CUCSA	2.6e-169	70.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G659600 PE=4 SV=1	[more]
M5XL53_PRUPE	7.8e-121	56.40	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003215mg PE=4 SV=1	[more]
F6H3U1_VITVI	1.9e-119	53.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05070 PE=4 SV=...	[more]
A5AQE7_VITVI	1.2e-118	53.42	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020760 PE=4 SV=1	[more]
K7L629_SOYBN	6.0e-113	47.25	Uncharacterized protein OS=Glycine max GN=GLYMA_08G113100 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g16790 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32450.1	1.1e-78	43.56	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G25580.1	9.5e-78	52.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G34370.1	9.9e-67	46.04	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G29710.1	2.9e-66	47.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G24000.1	3.9e-39	37.05	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cp4.1LG01g16790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086007\|ref\|XP_008443720.1\|	3.7e-180	72.67	PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-...	[more]
gi\|778664160\|ref\|XP_011660234.1\|	3.8e-169	70.72	PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial ...	[more]
gi\|596286417\|ref\|XP_007225613.1\|	1.1e-120	56.40	hypothetical protein PRUPE_ppa003215mg [Prunus persica]	[more]
gi\|225430210\|ref\|XP_002282464.1\|	2.8e-119	53.64	PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial ...	[more]
gi\|147856667\|emb\|CAN80315.1\|	1.8e-118	53.42	hypothetical protein VITISV_020760 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16790.1	Cp4.1LG01g16790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 231..251 score: 0.43coord: 292..321 score: 1.2E-4coord: 396..419 score: 0.025coord: 324..352 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 324..356 score: 1.2E-4coord: 293..322 score: 4.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 255..289 score: 6.281coord: 325..355 score: 6.445coord: 290..324 score: 10.49coord: 392..422 score: 7.07coord: 356..391 score: 6.073coord: 228..254 score:
None	No IPR available	unknown	Coil	Coil	coord: 604..604 score: -coord: 475..495 scor
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 226..499 score: 3.6E
None	No IPR available	PANTHER	PTHR24015:SF583	SUBFAMILY NOT NAMED	coord: 226..499 score: 3.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g16790	CmaCh04G019320	Cucurbita maxima (Rimu)	cmacpeB732
Cp4.1LG01g16790	CmoCh04G020490	Cucurbita moschata (Rifu)	cmocpeB686
Cp4.1LG01g16790	Carg24970	Silver-seed gourd	carcpeB1026

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g16790	Wax gourd	cpewgoB0559
Cp4.1LG01g16790	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g16790	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g16790	Bottle gourd (USVL1VR-Ls)	cpelsiB319
Cp4.1LG01g16790	Watermelon (Charleston Gray)	cpewcgB365
Cp4.1LG01g16790	Watermelon (Charleston Gray)	cpewcgB369
Cp4.1LG01g16790	Watermelon (97103) v1	cpewmB455