Cp4.1LG01g12720 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g12720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionhomeobox protein 54
LocationCp4.1LG01 : 8618136 .. 8620160 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTAACACTTTGTTGGAATGTAGGGCTAAATTTGAAAAGTGGAATTGGGGCTAAGGCCCAGTTTCCTGACATCAACCATTCTGCCGCCGCTCCCCGAGAAGAGATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCCTTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGATCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTACCCTTTTATTTTTCTGCCCTTCTGAAGTAGAAAAGGCTCTCGGCGAAAATATAGAGTAAATTGGAAGCTCTCTTCTGATCATTCTTGTTGGGTGGAGATTTATGTACCAGATTTTGTTTATCTTTTACTGTTTGCTGCATTTCTCGCATTCCTATATTGAAATTTTGAACTATTCCTTCATCTACTTTCGCAAATTTCTCAACGTCCATCTGAATTTAGGTCTTGATTTTGCGTGCAAAACTCTAAACTGGCTAGGGCTTGAGACTCAATTGGATTTGCTGCTCTACTAGTTTTCATTGTGAATGGTGAAATTGAGGACATTTCCACAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCGTTGTCAACCCCAGAAAAAGCAACAGCTCATCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAAGGTTATAGATCACTTCATTATTTGATAGTTTGTCTGTTTGTTTGCTCTTTTTTGGGTATATTATGGTGTAGTATAGATTGAGTGTTCGAGTGCATAACTGTTTATGCTAGATTTCTCCCAATTCCCCCTTAATTCTTACTAGTTCAAGCTTATTTATGGTCCTAAATTCATGTGTGTTAAATGTAAATCTTCCATTAATACAAAGAAACTCGAGCTTCTCAACAAAGCTTTGTTGCATAATCAGTGCGTTCTTTTTTTCCAACTGTTCTGAGTTCATCGAGATGCTGGGTGCTTGCTTTTAATTATGCTTCGGCTTTCCTTACTATATGAGCTTCTGCAAGAGCACAGAACCTCCTCTAAGAAGAATGCATCTTCTAACGGATTGGAAGATGTTTGTGGTTGAGCAGAACTTTTATGGAGTATTCAAATGTATGATTATTATATTTACCGTATAATTTATGGTTAAATTCTGTTCTTGAACGTCCATGGGCTCAGCAGGAACTGTTTTTGGCTTCTTCTTGAGGGTTTTGTAATAACTTTTTCTTGGGTTTTTGTGAGCTCTCTTGGCTGTTCTTGTTCTTGCTCCATGTTTTGATGAGTTCTATTTCAAAAGACAAAATTTGTGAAATAGAATTACTCCTTTGATACATAACATATGAAAAAAAACAAGAGACCGTGACAAGAATCGTGAAAAATGAGTCTTCAATGATTCTTATTGAGCTGATTGAGTCTCCGGAAATAATTGTTATGTTTATCTATATTTTTACATCAGCGAGAAATGTGAACTTGGAGAAGGAGGAAGCCTAGACTAGAAGTTAAGACAAATGCATGTATAATTCGTACTAATATGTGCTACAAAAGGGGAATGTTATGGCACCCGACTCTACGGGCAAGCCTGGTGTAAACTGCTATGTGATAATCAGTAGATTATTCTCGTATCCACTGCTAATAACAATTGGGCGTAAAGGGTCGATCTTCCATTGGCCATCAACAATGAATTTAAT

mRNA sequence

TGCTAACACTTTGTTGGAATGTAGGGCTAAATTTGAAAAGTGGAATTGGGGCTAAGGCCCAGTTTCCTGACATCAACCATTCTGCCGCCGCTCCCCGAGAAGAGATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCCTTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGATCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCGTTGTCAACCCCAGAAAAAGCAACAGCTCATCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAAGGTTATAGATCACTTCATTATTTGATAGTTTGTCTGTTTGTTTGCTCTTTTTTGGGTATATTATGGTGTAGTATAGATTGAGTGTTCGAGTGCATAACTGTTTATGCTAGATTTCTCCCAATTCCCCCTTAATTCTTACTAGTTCAAGCTTATTTATGGTCCTAAATTCATGTGTGTTAAATGTAAATCTTCCATTAATACAAAGAAACTCGAGCTTCTCAACAAAGCTTTGTTGCATAATCAGTGCGTTCTTTTTTTCCAACTGTTCTGAGTTCATCGAGATGCTGGGTGCTTGCTTTTAATTATGCTTCGGCTTTCCTTACTATATGAGCTTCTGCAAGAGCACAGAACCTCCTCTAAGAAGAATGCATCTTCTAACGGATTGGAAGATGTTTGTGGTTGAGCAGAACTTTTATGGAGTATTCAAATGTATGATTATTATATTTACCGTATAATTTATGGTTAAATTCTGTTCTTGAACGTCCATGGGCTCAGCAGGAACTGTTTTTGGCTTCTTCTTGAGGGTTTTGTAATAACTTTTTCTTGGGTTTTTGTGAGCTCTCTTGGCTGTTCTTGTTCTTGCTCCATGTTTTGATGAGTTCTATTTCAAAAGACAAAATTTGTGAAATAGAATTACTCCTTTGATACATAACATATGAAAAAAAACAAGAGACCGTGACAAGAATCGTGAAAAATGAGTCTTCAATGATTCTTATTGAGCTGATTGAGTCTCCGGAAATAATTGTTATGTTTATCTATATTTTTACATCAGCGAGAAATGTGAACTTGGAGAAGGAGGAAGCCTAGACTAGAAGTTAAGACAAATGCATGTATAATTCGTACTAATATGTGCTACAAAAGGGGAATGTTATGGCACCCGACTCTACGGGCAAGCCTGGTGTAAACTGCTATGTGATAATCAGTAGATTATTCTCGTATCCACTGCTAATAACAATTGGGCGTAAAGGGTCGATCTTCCATTGGCCATCAACAATGAATTTAAT

Coding sequence (CDS)

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCCTTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGATCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCGTTGTCAACCCCAGAAAAAGCAACAGCTCATCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

Protein sequence

MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDEPFRGREVVAYDDIL
Homology
[Close]
BLAST of Cp4.1LG01g12720 vs. Swiss-Prot
Match: Y1705_ARATH (Uncharacterized protein At1g27050 OS=Arabidopsis thaliana GN=At1g27050 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.3e-49
Identity = 105/206 (50.97%), Postives = 141/206 (68.45%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY + H     +KRRR   P+S    D+ +DKP+ KP PP ALVV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSS-SEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSN----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS +VNPR  N     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDEPFRGREVVAYDDIL 195
                SS  +    + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

[Close]
BLAST of Cp4.1LG01g12720 vs. TrEMBL
Match: A0A0A0KTW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604220 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.6e-86
Identity = 169/194 (87.11%), Postives = 176/194 (90.72%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H  TS  KRRR  PP S   E+DD++KP+ KPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSSHLPTSAPKRRR--PPPS--TENDDLEKPVSKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLAS +VNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]
BLAST of Cp4.1LG01g12720 vs. TrEMBL
Match: A0A067GSQ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029624mg PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.9e-62
Identity = 132/195 (67.69%), Postives = 152/195 (77.95%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPYPS H + S  KRRR   P   PA DDD  KP  KP PP A+VV+ LP +CS
Sbjct: 1   MSRKRDKPYPSRHDANSAPKRRR---PLPRPAADDD--KPYAKPLPPPAVVVMGLPPNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYG+ISRIRIDR+ +GYI YRTKDSA+AA+AAALD SFG T+DS+KVQVLW
Sbjct: 61  VLDLKSRFEIYGAISRIRIDRNRLGYITYRTKDSAEAAIAAALDASFGITVDSQKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKS-NSSSRSD 180
           A DP  QW++ +  G NK+   SSKLLRAEVPLSRHGRG KLAS +VNP+ S + SS  +
Sbjct: 121 ATDPLAQWKEAVKSGANKDIGSSSKLLRAEVPLSRHGRGIKLASAIVNPKTSGDGSSALE 180

Query: 181 EPFRGREVVAYDDIL 195
            PFRGRE+VAYDDIL
Sbjct: 181 VPFRGREIVAYDDIL 190

[Close]
BLAST of Cp4.1LG01g12720 vs. TrEMBL
Match: B9S2D0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0698730 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 128/196 (65.31%), Postives = 149/196 (76.02%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRD PY S H    F KRRR  PP   P+ +D++DKP P P  P A+VV+ LP +CS
Sbjct: 1   MSRKRDNPYFSRHDRVPFPKRRRPLPPHPPPSAEDEIDKPTPTPQSPPAVVVMGLPPNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYG ISR RIDRD V  I +RT+DSA+AA+AAALD SFG TI SK+VQVLW
Sbjct: 61  VLDLKSRFEIYGEISRTRIDRD-VALITFRTRDSAEAAIAAALDTSFGITIGSKRVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRS-- 180
           A DP  QWR+G+ VG NK    SSKLLR+E+PLSRHGRGNKLAS +VNP+ SNS + S  
Sbjct: 121 ATDPLAQWREGVGVGGNKESGSSSKLLRSEIPLSRHGRGNKLASAIVNPKSSNSDASSVL 180

Query: 181 DEPFRGREVVAYDDIL 195
           D PF+GRE+VAYDDIL
Sbjct: 181 DVPFKGREIVAYDDIL 195

[Close]
BLAST of Cp4.1LG01g12720 vs. TrEMBL
Match: V4TJM6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032837mg PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.5e-61
Identity = 131/195 (67.18%), Postives = 151/195 (77.44%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPYPS H + S  KRRR   P   PA DDD  KP  KP PP A+VV+ L  +CS
Sbjct: 1   MSRKRDKPYPSRHDANSAPKRRR---PLPRPAADDD--KPYVKPLPPPAVVVMGLRPNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYG+ISRIRIDR+ +GYI YRTKDSA+AA+AAALD SFG T+DS+KVQVLW
Sbjct: 61  VLDLKSRFEIYGAISRIRIDRNRLGYITYRTKDSAEAAIAAALDASFGITVDSQKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKS-NSSSRSD 180
           A DP  QW++ +  G NK+   SSKLLRAEVPLSRHGRG KLAS +VNP+ S + SS  +
Sbjct: 121 ATDPLAQWKEAVKSGANKDIGSSSKLLRAEVPLSRHGRGIKLASAIVNPKTSGDGSSALE 180

Query: 181 EPFRGREVVAYDDIL 195
            PFRGRE+VAYDDIL
Sbjct: 181 VPFRGREIVAYDDIL 190

[Close]
BLAST of Cp4.1LG01g12720 vs. TrEMBL
Match: A0A061E795_THECC (Homeobox-leucine zipper protein ATHB-54 OS=Theobroma cacao GN=TCM_009958 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 8.8e-58
Identity = 126/197 (63.96%), Postives = 148/197 (75.13%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY S     S +KRRR  PP  LP  +D+      KP PP A+VV+ LP +CS
Sbjct: 1   MSRKRDKPYFSRLGPASISKRRRPLPPYPLPPPEDE-----DKPTPPPAVVVMGLPPNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYG ISRIRI+RD VGYI YR+K+SA++A+AA+LD SFG TIDS KVQVLW
Sbjct: 61  VLDLKSRFEIYGPISRIRINRDAVGYIAYRSKESAESAIAASLDSSFGITIDSTKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKN--KEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKS-NSSSR 180
           A DP  +WR+G+ VG NK+     SSKLLR EVPLSRHGRGNKLAS +VNPR S + SS 
Sbjct: 121 ATDPLAKWREGVGVGANKDNGSSSSSKLLRPEVPLSRHGRGNKLASAIVNPRSSDDGSSM 180

Query: 181 SDEPFRGREVVAYDDIL 195
            + PF+GR +VAYDDIL
Sbjct: 181 LEVPFKGRGIVAYDDIL 192

[Close]
BLAST of Cp4.1LG01g12720 vs. TAIR10
Match: AT1G27050.1 (AT1G27050.1 homeobox protein 54)

HSP 1 Score: 197.6 bits (501), Expect = 7.1e-51
Identity = 105/206 (50.97%), Postives = 141/206 (68.45%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY + H     +KRRR   P+S    D+ +DKP+ KP PP ALVV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSS-SEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSN----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS +VNPR  N     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDEPFRGREVVAYDDIL 195
                SS  +    + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

[Close]
BLAST of Cp4.1LG01g12720 vs. NCBI nr
Match: gi|659090973|ref|XP_008446301.1| (PREDICTED: uncharacterized protein At1g27050 [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 2.2e-86
Identity = 169/194 (87.11%), Postives = 178/194 (91.75%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H  TS AKRRR  PP+++   DDD++KP+ KPAPPLALVVVDLPS CS
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRR-PPPSTV---DDDLEKPVSKPAPPLALVVVDLPSQCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLAST+VNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]
BLAST of Cp4.1LG01g12720 vs. NCBI nr
Match: gi|778705273|ref|XP_011655662.1| (PREDICTED: uncharacterized protein At1g27050 [Cucumis sativus])

HSP 1 Score: 326.2 bits (835), Expect = 3.8e-86
Identity = 169/194 (87.11%), Postives = 176/194 (90.72%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H  TS  KRRR  PP S   E+DD++KP+ KPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSSHLPTSAPKRRR--PPPS--TENDDLEKPVSKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLAS +VNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]
BLAST of Cp4.1LG01g12720 vs. NCBI nr
Match: gi|1009153907|ref|XP_015894879.1| (PREDICTED: uncharacterized protein At1g27050 [Ziziphus jujuba])

HSP 1 Score: 250.0 bits (637), Expect = 3.4e-63
Identity = 137/196 (69.90%), Postives = 152/196 (77.55%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY S H   S AKRRR  P  S PA + + DKP+ KPAPP ALVV+ LPS CS
Sbjct: 1   MSRKRDKPYFSRHVPASVAKRRRPHPHTS-PAVEVEEDKPIAKPAPPPALVVMGLPSDCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRD VGY+ YR+KDSA+AA+AA+LDPSFG TI S+KV+VLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDAVGYVAYRSKDSAEAAIAASLDPSFGITIHSQKVKVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRS-- 180
           A DP   WR+G  V    N   SSKLLRAEVPLSRHGRGNKLAST+VNPR    SS S  
Sbjct: 121 ATDPLALWREG--VASKDNGSSSSKLLRAEVPLSRHGRGNKLASTIVNPRSGEDSSASAL 180

Query: 181 DEPFRGREVVAYDDIL 195
           D PFRGRE++AYDDIL
Sbjct: 181 DVPFRGREIIAYDDIL 193

[Close]
BLAST of Cp4.1LG01g12720 vs. NCBI nr
Match: gi|641864037|gb|KDO82723.1| (hypothetical protein CISIN_1g029624mg [Citrus sinensis])

HSP 1 Score: 245.4 bits (625), Expect = 8.4e-62
Identity = 132/195 (67.69%), Postives = 152/195 (77.95%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPYPS H + S  KRRR   P   PA DDD  KP  KP PP A+VV+ LP +CS
Sbjct: 1   MSRKRDKPYPSRHDANSAPKRRR---PLPRPAADDD--KPYAKPLPPPAVVVMGLPPNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYG+ISRIRIDR+ +GYI YRTKDSA+AA+AAALD SFG T+DS+KVQVLW
Sbjct: 61  VLDLKSRFEIYGAISRIRIDRNRLGYITYRTKDSAEAAIAAALDASFGITVDSQKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKS-NSSSRSD 180
           A DP  QW++ +  G NK+   SSKLLRAEVPLSRHGRG KLAS +VNP+ S + SS  +
Sbjct: 121 ATDPLAQWKEAVKSGANKDIGSSSKLLRAEVPLSRHGRGIKLASAIVNPKTSGDGSSALE 180

Query: 181 EPFRGREVVAYDDIL 195
            PFRGRE+VAYDDIL
Sbjct: 181 VPFRGREIVAYDDIL 190

[Close]
BLAST of Cp4.1LG01g12720 vs. NCBI nr
Match: gi|255558244|ref|XP_002520149.1| (PREDICTED: uncharacterized protein At1g27050 [Ricinus communis])

HSP 1 Score: 244.6 bits (623), Expect = 1.4e-61
Identity = 128/196 (65.31%), Postives = 149/196 (76.02%), Query Frame = 1 

Query: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRD PY S H    F KRRR  PP   P+ +D++DKP P P  P A+VV+ LP +CS
Sbjct: 1   MSRKRDNPYFSRHDRVPFPKRRRPLPPHPPPSAEDEIDKPTPTPQSPPAVVVMGLPPNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYG ISR RIDRD V  I +RT+DSA+AA+AAALD SFG TI SK+VQVLW
Sbjct: 61  VLDLKSRFEIYGEISRTRIDRD-VALITFRTRDSAEAAIAAALDTSFGITIGSKRVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRS-- 180
           A DP  QWR+G+ VG NK    SSKLLR+E+PLSRHGRGNKLAS +VNP+ SNS + S  
Sbjct: 121 ATDPLAQWREGVGVGGNKESGSSSKLLRSEIPLSRHGRGNKLASAIVNPKSSNSDASSVL 180

Query: 181 DEPFRGREVVAYDDIL 195
           D PF+GRE+VAYDDIL
Sbjct: 181 DVPFKGREIVAYDDIL 195

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g12720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y1705_ARATH1.3e-4950.97Uncharacterized protein At1g27050 OS=Arabidopsis thaliana GN=At1g27050 PE=2 SV=1[more]
BLAST of Cp4.1LG01g12720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTW9_CUCSA2.6e-8687.11Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604220 PE=4 SV=1[more]
A0A067GSQ4_CITSI5.9e-6267.69Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029624mg PE=4 SV=1[more]
B9S2D0_RICCO1.0e-6165.31Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0698730 PE=4 SV=1[more]
V4TJM6_9ROSI8.5e-6167.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032837mg PE=4 SV=1[more]
A0A061E795_THECC8.8e-5863.96Homeobox-leucine zipper protein ATHB-54 OS=Theobroma cacao GN=TCM_009958 PE=4 SV... [more]
BLAST of Cp4.1LG01g12720 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G27050.17.1e-5150.97 homeobox protein 54[more]
BLAST of Cp4.1LG01g12720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090973|ref|XP_008446301.1|2.2e-8687.11PREDICTED: uncharacterized protein At1g27050 [Cucumis melo][more]
gi|778705273|ref|XP_011655662.1|3.8e-8687.11PREDICTED: uncharacterized protein At1g27050 [Cucumis sativus][more]
gi|1009153907|ref|XP_015894879.1|3.4e-6369.90PREDICTED: uncharacterized protein At1g27050 [Ziziphus jujuba][more]
gi|641864037|gb|KDO82723.1|8.4e-6267.69hypothetical protein CISIN_1g029624mg [Citrus sinensis][more]
gi|255558244|ref|XP_002520149.1|1.4e-6165.31PREDICTED: uncharacterized protein At1g27050 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g12720.1Cp4.1LG01g12720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 50..101
score: 4.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 49..119
score: 1.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 48..123
score: 10
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 25..127
score: 1.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 31..133
score: 2.85

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g12720Cucsa.285420Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g12720CmaCh04G016260Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g12720CmoCh04G017040Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g12720Cla010150Watermelon (97103) v1cpewmB432
Cp4.1LG01g12720Csa5G604220Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g12720MELO3C012060Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g12720ClCG05G024650Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g12720CSPI05G23360Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g12720Lsi04G004700Bottle gourd (USVL1VR-Ls)cpelsiB360
Cp4.1LG01g12720MELO3C012060.2Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g12720CsaV3_5G032280Cucumber (Chinese Long) v3cpecucB0518
Cp4.1LG01g12720Bhi07G001316Wax gourdcpewgoB0568
Cp4.1LG01g12720CsGy5G022860Cucumber (Gy14) v2cgybcpeB626
Cp4.1LG01g12720Carg01732Silver-seed gourdcarcpeB1177
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g12720Cucurbita pepo (Zucchini)cpecpeB034
Cp4.1LG01g12720Cucurbita pepo (Zucchini)cpecpeB203
Cp4.1LG01g12720Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG01g12720Cucurbita maxima (Rimu)cmacpeB432
Cp4.1LG01g12720Cucurbita moschata (Rifu)cmocpeB395
Cp4.1LG01g12720Watermelon (97103) v1cpewmB444
Cp4.1LG01g12720Cucumber (Gy14) v2cgybcpeB061
Cp4.1LG01g12720Cucumber (Gy14) v2cgybcpeB645
Cp4.1LG01g12720Melon (DHL92) v3.6.1cpemedB421
Cp4.1LG01g12720Melon (DHL92) v3.6.1cpemedB459
Cp4.1LG01g12720Silver-seed gourdcarcpeB0148
Cp4.1LG01g12720Cucumber (Chinese Long) v3cpecucB0470
Cp4.1LG01g12720Cucumber (Chinese Long) v3cpecucB0537
Cp4.1LG01g12720Wax gourdcpewgoB0507
Cp4.1LG01g12720Wax gourdcpewgoB0551
Cp4.1LG01g12720Wax gourdcpewgoB0581