Carg01732 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01732
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Homeobox transcription factor
Location	Cucurbita_argyrosperma_scaffold_003 : 168313 .. 169229 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTGCGTCCTTCGCTAAGAGGCGGCGTCATCAGCCGCCGGAATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCATTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTACCCTTTTATTTTTCTGCCCTTCTGAAGTAGAAAAGGCTCTCGGAGAAAATATAGAGTAAATTGGAAGCTCTCTTCTGATCATTCTTGTTGGGTGGAGATTTATGTAGCAGATTTTGTTTATCTTTTACTGTTTGCTGCATTTCTCGCATTCCTATATTAAAAATTTGAACTATTCCTTCATCTACTTTCGCAAATTTCTCAACGCCCATCTGAATTTAGGTCTTGATTTTGCGTGCAAAACTATAAATTGGCTAGGGCTTGAGACTCAATTGGATTTGCTGCTCTACTAGTTTTCATTGTGAATGGTGAAATTGAGGACATTTCCACAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAACAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

mRNA sequence

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTGCGTCCTTCGCTAAGAGGCGGCGTCATCAGCCGCCGGAATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCATTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAACAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

Coding sequence (CDS)

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTGCGTCCTTCGCTAAGAGGCGGCGTCATCAGCCGCCGGAATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCATTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAACAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

Protein sequence

MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

Homology

[Close]

BLAST of Carg01732 vs. NCBI nr
Match: XP_023537967.1 (uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.9 bits (982), Expect = 6.6e-103
Identity = 191/194 (98.45%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSPHHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLAST+VNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Carg01732 vs. NCBI nr
Match: XP_022957251.1 (uncharacterized protein At1g27050 [Cucurbita moschata])

HSP 1 Score: 380.9 bits (977), Expect = 2.5e-102
Identity = 190/194 (97.94%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSPHHS SFAKRRRHQPP SLP EDDDVDKPLPKPAPP+ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Carg01732 vs. NCBI nr
Match: XP_023000221.1 (uncharacterized protein At1g27050 [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 4.3e-102
Identity = 191/194 (98.45%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS HHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Carg01732 vs. NCBI nr
Match: XP_011655662.1 (PREDICTED: uncharacterized protein At1g27050 [Cucumis sativus] >KGN51877.1 hypothetical protein Csa_5G604220 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 7.6e-83
Identity = 164/194 (84.54%), Postives = 170/194 (87.63%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H   S  KR           E+DD++KP+ KPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSSHLPTSAPKR----XXXXXXTENDDLEKPVSKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLAS IVNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]

BLAST of Carg01732 vs. NCBI nr
Match: XP_008446301.1 (PREDICTED: uncharacterized protein At1g27050 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 2.5e-78
Identity = 159/194 (81.96%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H   S                   ++KP+ KPAPPLALVVVDLPS CS
Sbjct: 1   MGRKRDKPYPSSHLPTS----XXXXXXXXXXXXXXXLEKPVSKPAPPLALVVVDLPSQCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]

BLAST of Carg01732 vs. TAIR10
Match: AT1G27050.1 (homeobox protein 54)

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-47
Identity = 102/206 (49.51%), Postives = 136/206 (66.02%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY + H  A  +KRRR   P S    D+ +DKP+ K       VV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSS-SEHDEIIDKPITKXXXXXXXVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDEPFRGREVVAYDDIL 195
                SS  +    + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

[Close]

BLAST of Carg01732 vs. Swiss-Prot
Match: sp|P0CJ66|Y1705_ARATH (Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46
Identity = 102/206 (49.51%), Postives = 136/206 (66.02%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY + H  A  +KRRR   P S    D+ +DKP+ K       VV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSS-SEHDEIIDKPITKXXXXXXXVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDEPFRGREVVAYDDIL 195
                SS  +    + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

[Close]

BLAST of Carg01732 vs. TrEMBL
Match: tr|A0A0A0KTW9|A0A0A0KTW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604220 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 5.0e-83
Identity = 164/194 (84.54%), Postives = 170/194 (87.63%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H   S  KR           E+DD++KP+ KPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSSHLPTSAPKR----XXXXXXTENDDLEKPVSKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLAS IVNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASAIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]

BLAST of Carg01732 vs. TrEMBL
Match: tr|A0A1S3BE88|A0A1S3BE88_CUCME (uncharacterized protein At1g27050 OS=Cucumis melo OX=3656 GN=LOC103489077 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.7e-78
Identity = 159/194 (81.96%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS H   S                   ++KP+ KPAPPLALVVVDLPS CS
Sbjct: 1   MGRKRDKPYPSSHLPTS----XXXXXXXXXXXXXXXLEKPVSKPAPPLALVVVDLPSQCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]

BLAST of Carg01732 vs. TrEMBL
Match: tr|A0A2I4DMM4|A0A2I4DMM4_9ROSI (uncharacterized protein At1g27050-like OS=Juglans regia OX=51240 GN=LOC108981626 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.5e-63
Identity = 138/196 (70.41%), Postives = 154/196 (78.57%), Query Frame = 0


Query: 3   RKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDD-VDKPLPKPAPPLALVVVDLPSHCSV 62
           RKRDKPY S H  AS +KRRRH P   L  +D D VD P+ KPAP  ALVV+ LP  CSV
Sbjct: 5   RKRDKPYFSRHVPASLSKRRRHMPSHPLLGDDGDVVDTPIAKPAPAPALVVMGLPVDCSV 64

Query: 63  LDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLWA 122
           LD+KSRFEIYGSISRIRIDRD   YIMYRTKDSA+AA+AAALDPSFG T+DS +V+V+WA
Sbjct: 65  LDVKSRFEIYGSISRIRIDRDGSAYIMYRTKDSAEAAIAAALDPSFGITVDSTEVKVMWA 124

Query: 123 NDPQVQWRQGINVGVNK-NKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN--SSSRS 182
            DP   WRQG+ +G +K N   SSKLLRAEVPLSRHGRGNKLAS IV PR SN  SSS S
Sbjct: 125 TDPLALWRQGVGLGASKGNGSSSSKLLRAEVPLSRHGRGNKLASAIVKPRSSNYGSSSVS 184

Query: 183 DEPFRGREVVAYDDIL 195
           + PFRGRE+VAYDDIL
Sbjct: 185 EVPFRGREIVAYDDIL 200

[Close]

BLAST of Carg01732 vs. TrEMBL
Match: tr|A0A2N9EBV5|A0A2N9EBV5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 9.8e-63
Identity = 142/200 (71.00%), Postives = 156/200 (78.00%), Query Frame = 0


Query: 3   RKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDV--DKPLPKPAPPLALVVVDLPSHCS 62
           RKRDKPY S H   S  KRRR QP E     DDDV  DKP+ KPAPP ALVV  L + CS
Sbjct: 5   RKRDKPYFSRHVPTSLIKRRR-QPHE----VDDDVIEDKPIQKPAPPPALVVTGLGTGCS 64

Query: 63  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 122
           VLDLKSRFEIYGS SRIRIDRD V Y+MYRTKDSA+AA+AA+LDPSFG  +DS+KVQVLW
Sbjct: 65  VLDLKSRFEIYGSTSRIRIDRDGVAYVMYRTKDSAEAAIAASLDPSFGDNLDSEKVQVLW 124

Query: 123 ANDPQVQWRQGINVGVNKNKEM--SSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----S 182
           A DP  QWR+G+ VGVNK+  +  SSKLLRAEVPLSRHGRGNKLAS IVNPR +N    S
Sbjct: 125 ATDPLAQWREGVGVGVNKDNALSSSSKLLRAEVPLSRHGRGNKLASAIVNPRSNNNDGSS 184

Query: 183 SSRSDEPFRGREVVAYDDIL 195
           SS  D PFRGRE+VAYDDIL
Sbjct: 185 SSVIDVPFRGREIVAYDDIL 199

[Close]

BLAST of Carg01732 vs. TrEMBL
Match: tr|A0A067GSQ4|A0A067GSQ4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029624mg PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.4e-61
Identity = 133/195 (68.21%), Postives = 152/195 (77.95%), Query Frame = 0


Query: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPYPS H + S  KRRR   P   PA DD  DKP  KP PP A+VV+ LP +CS
Sbjct: 1   MSRKRDKPYPSRHDANSAPKRRR---PLPRPAADD--DKPYAKPLPPPAVVVMGLPPNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYG+ISRIRIDR+ +GYI YRTKDSA+AA+AAALD SFG T+DS+KVQVLW
Sbjct: 61  VLDLKSRFEIYGAISRIRIDRNRLGYITYRTKDSAEAAIAAALDASFGITVDSQKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKS-NSSSRSD 180
           A DP  QW++ +  G NK+   SSKLLRAEVPLSRHGRG KLAS IVNP+ S + SS  +
Sbjct: 121 ATDPLAQWKEAVKSGANKDIGSSSKLLRAEVPLSRHGRGIKLASAIVNPKTSGDGSSALE 180

Query: 181 EPFRGREVVAYDDIL 195
            PFRGRE+VAYDDIL
Sbjct: 181 VPFRGREIVAYDDIL 190

The following BLAST results are available for this feature:

BLAST of Carg01732 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537967.1	6.6e-103	98.45	uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]	[more]
XP_022957251.1	2.5e-102	97.94	uncharacterized protein At1g27050 [Cucurbita moschata]	[more]
XP_023000221.1	4.3e-102	98.45	uncharacterized protein At1g27050 [Cucurbita maxima]	[more]
XP_011655662.1	7.6e-83	84.54	PREDICTED: uncharacterized protein At1g27050 [Cucumis sativus] >KGN51877.1 hypot...	[more]
XP_008446301.1	2.5e-78	81.96	PREDICTED: uncharacterized protein At1g27050 [Cucumis melo]	[more]

BLAST of Carg01732 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27050.1	1.6e-47	49.51	homeobox protein 54	[more]

BLAST of Carg01732 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0CJ66\|Y1705_ARATH	3.0e-46	49.51	Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 P...	[more]

BLAST of Carg01732 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTW9\|A0A0A0KTW9_CUCSA	5.0e-83	84.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604220 PE=4 SV=1	[more]
tr\|A0A1S3BE88\|A0A1S3BE88_CUCME	1.7e-78	81.96	uncharacterized protein At1g27050 OS=Cucumis melo OX=3656 GN=LOC103489077 PE=4 S...	[more]
tr\|A0A2I4DMM4\|A0A2I4DMM4_9ROSI	1.5e-63	70.41	uncharacterized protein At1g27050-like OS=Juglans regia OX=51240 GN=LOC108981626...	[more]
tr\|A0A2N9EBV5\|A0A2N9EBV5_FAGSY	9.8e-63	71.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33 PE=4 SV=1	[more]
tr\|A0A067GSQ4\|A0A067GSQ4_CITSI	2.4e-61	68.21	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029624mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01732-RA	Carg01732-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 49..119 e-value: 1.0E-4 score: 31.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 50..101 e-value: 4.5E-6 score: 26.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 48..123 score: 10.428
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..129 e-value: 4.1E-10 score: 41.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..181
None	No IPR available	CDD	cd00590	RRM_SF	coord: 52..94 e-value: 2.34643E-4 score: 36.5141
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 35..133

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01732	Cla010150	Watermelon (97103) v1	carwmB0839
Carg01732	Csa5G604220	Cucumber (Chinese Long) v2	carcuB0860
Carg01732	MELO3C012060	Melon (DHL92) v3.5.1	carmeB0831
Carg01732	ClCG05G024650	Watermelon (Charleston Gray)	carwcgB0813
Carg01732	CSPI05G23360	Wild cucumber (PI 183967)	carcpiB0880
Carg01732	Cucsa.285420	Cucumber (Gy14) v1	carcgyB0966
Carg01732	CmaCh04G016260	Cucurbita maxima (Rimu)	carcmaB1170
Carg01732	CmoCh04G017040	Cucurbita moschata (Rifu)	carcmoB1138
Carg01732	Lsi04G004700	Bottle gourd (USVL1VR-Ls)	carlsiB764
Carg01732	Cp4.1LG01g12720	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01732	CsGy5G022860	Cucumber (Gy14) v2	carcgybB0833
Carg01732	MELO3C012060.2	Melon (DHL92) v3.6.1	carmedB0843
Carg01732	CsaV3_5G032280	Cucumber (Chinese Long) v3	carcucB0884
Carg01732	Cla97C05G106760	Watermelon (97103) v2	carwmbB0875
Carg01732	Bhi07G001316	Wax gourd	carwgoB0980

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01732	Silver-seed gourd	carcarB117
Carg01732	Cucurbita maxima (Rimu)	carcmaB1164
Carg01732	Cucurbita moschata (Rifu)	carcmoB1132
Carg01732	Cucurbita pepo (Zucchini)	carcpeB1170
Carg01732	Watermelon (97103) v2	carwmbB0871
Carg01732	Watermelon (97103) v2	carwmbB0872
Carg01732	Watermelon (97103) v2	carwmbB0879
Carg01732	Watermelon (97103) v2	carwmbB0882
Carg01732	Wax gourd	carwgoB0978