Cp4.1LG01g12200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g12200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEukaryotic translation initiation factor 5A
LocationCp4.1LG01 : 8905484 .. 8907924 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAAACCCTAGGATACTCGCTCCCCTTTGTTGCCGTCCATCCTATATTCTTCGTTTTTCTCGTGCATATATAAATTCGCTTCTTTCTTCAACCCACTCCGTCGCACGTCTCTGAGCCTTTTTACTTTTCCGTCATCACCCTCTCCTCTTTGCACTCTTTCTCCCTACAGAGCCATGTCTGACGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGCAAGAATGGTTACATTGTCATCAAGGGCAGGCCCTGCAAGGTTCTTATCGTTTTCGTTCATGTTTCCTCAATTAGCCCTCATCCTTCGCCCCATTTATCTACATAATTCTTGTTTAACATGATTGATAGTTTTGCGCTCAATCCCCTCTGCTTCAATTTTTCATGTAGCTTCTTCAACGGCTTTCCTTTTATCCCATCTTCTTCTGTGGTTTCGGTTGATTGTGTTTCTGTGATCTTCACTGATCTTCTCCGCTGTTCTATCCTTTATTTATGTACTTACCTATTTTTCTCTTCTGATTTTACTCCTAGATGCTGTCGTCCATCTATTTTAGTTTGTAAGTCAAATTTATTTTGGATGAAATTGAATTGACGCCCAACCTCGTAAAGCTTAAATGGAAGTAATGAATTGTATGGAGATATCATATGTCAAGTCTTTTTCTTTTAGGGTTTTCACCTTTGGTGGTTTCAGCATAATATTATATTTGTTTTCCTTTTAAAAAATCTTGACCTAAGGCACATGCATTATCGTTTGTAGGTTGTTGAAGTTTCAACCTCTAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGCCATTGACATTTTCACCTCTAAAAAGCTTGAAGATATCGTTCCTTCTTCTCACAACTGTGATGTATGATGATTTTTCTTTTCCTTTTCGATTTTATACTTTTCTTAGCAGGCTGTAAATTTGTTTGAGCAAGTTTTTTTTGTGATTACTGAGTCTTGTATTCTTGAAACACAGGTTCCCCATGTCAGTCGCACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTGTATGATTAAATTCTGTTTGTTTAGTTCTTATATCGATTTCCCCCCGGTTGTTCATGTAGAGCACCGTGGCTAACAACCCTAATTTCAATGTAAACTTATCAGATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAAACGATGAGAGTCTGATGACCCAGGTAATATTTTCTTATTGGCTGTCGACAGTTTCCTGTGTTGTGTTCAATTGGCCTTGATGGCTTGGTAGACCCCATTGCGACTATTTCTTCATTCCTTCACGTTTATTAGCTGGTCCTTTTTTTTATGGGACTTCGTTACTCTGGGATTAGGAGTTATGAGTGTATATATGACTTTCTGTTCACTAATATAGGCTTGAGATAGGTTTGAGTTTCTTGCTAAATGTGGACATGTGGTTTATTTAAGGAGGGTGTACCCTTGAAGAAGGGTTGAAATAGCTGTGTTTTTTTTTTTTTTTTTTGAAGTCTTAAATGCTAAAACGTTGTTTTCAAATGTAGAAATTTAGTTTTTGTATGATTAACTAACAACCATTTAATATTAGTAGATAGAAAAGGATCCCATGATTCCAAGCCAAGATTGTAATTTCTATAGCTTTTCTATAAAGGGTAAATCTTGGTTGATAAATATTGATATGTTGATCTAGAAGTGACTTCCTTTCTTGCGAGGTGGATTCTTATCGTGAGATCAATAGCTTTAGATGATATTACTTCCATATTTTTGGCTGCTTTCTGTTCTATGCGAGCTATGAGTGGCATTAGTTCTTAAGATTGGTCGTCTTGTTCCATGTGCTACATACAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAGTTTCCTCTGGGAAGACAAACGCAAAAAGATTTTAGAACGATATCCAGATCGTAATCCGTAGTCGTTTGACATGTTTTGAGAAAGCTTGGTTCGATGCTGCTCCTCGATTAGTTGTTTCTTTTACTATGGAGTCTTTACAATTAAGATTTATTTTTGTCCTGCCTATTGCTGTTTGAATTAAGAGTTTTTTCTTGGCTAGTCGTCCGTCATCAAATTATGTAAACTTCATAGTTGCTATGGTTGCTTAAGAGTCGTAGGATAGAATCATTCTAATATTTATTCACCGATGGGGATTTCTTCCTTAGTTATATACTTCTATTGCTTATCATATTGTGCAACTTTCTTTCTTATGAATCTTGGCTTTATGTGTTTTCTTGGTGCATTCATTTATATATACCTACCAATGTTTC

mRNA sequence

TTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAAACCCTAGGATACTCGCTCCCCTTTGTTGCCGTCCATCCTATATTCTTCGTTTTTCTCGTGCATATATAAATTCGCTTCTTTCTTCAACCCACTCCGTCGCACGTCTCTGAGCCTTTTTACTTTTCCGTCATCACCCTCTCCTCTTTGCACTCTTTCTCCCTACAGAGCCATGTCTGACGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGCAAGAATGGTTACATTGTCATCAAGGGCAGGCCCTGCAAGGTTGTTGAAGTTTCAACCTCTAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGCCATTGACATTTTCACCTCTAAAAAGCTTGAAGATATCGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTCAGTCGCACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAAACGATGAGAGTCTGATGACCCAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAGTTTCCTCTGGGAAGACAAACGCAAAAAGATTTTAGAACGATATCCAGATCGTAATCCGTAGTCGTTTGACATGTTTTGAGAAAGCTTGGTTCGATGCTGCTCCTCGATTAGTTGTTTCTTTTACTATGGAGTCTTTACAATTAAGATTTATTTTTGTCCTGCCTATTGCTGTTTGAATTAAGAGTTTTTTCTTGGCTAGTCGTCCGTCATCAAATTATGTAAACTTCATAGTTGCTATGGTTGCTTAAGAGTCGTAGGATAGAATCATTCTAATATTTATTCACCGATGGGGATTTCTTCCTTAGTTATATACTTCTATTGCTTATCATATTGTGCAACTTTCTTTCTTATGAATCTTGGCTTTATGTGTTTTCTTGGTGCATTCATTTATATATACCTACCAATGTTTC

Coding sequence (CDS)

ATGTCTGACGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGCAAGAATGGTTACATTGTCATCAAGGGCAGGCCCTGCAAGGTTGTTGAAGTTTCAACCTCTAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGCCATTGACATTTTCACCTCTAAAAAGCTTGAAGATATCGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTCAGTCGCACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAAACGATGAGAGTCTGATGACCCAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAG

Protein sequence

MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPNDESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Homology
[Close]
BLAST of Cp4.1LG01g12200 vs. Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 4.6e-82
Identity = 145/159 (91.19%), Postives = 156/159 (98.11%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFT KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLT++GNTKDDLRLP D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ++L+TQIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 5.1e-81
Identity = 145/159 (91.19%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFT KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTD+GNTKDDLRLP D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           +SL++QIKDGFAEGKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 DSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 8.7e-81
Identity = 145/159 (91.19%), Postives = 154/159 (96.86%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFT KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTD+GNTKDDLRLP D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+L++ IKDGFAEGKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 ENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.5e-80
Identity = 142/159 (89.31%), Postives = 153/159 (96.23%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFE  ADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIF  KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTD+G+TKDDL+LP D
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           +SL+TQIKDGFA+GKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 298.5 bits (763), Expect = 4.3e-80
Identity = 140/159 (88.05%), Postives = 154/159 (96.86%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           V IDIF  KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLT++GNTKDDLRLP D
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+L++QIKDGFAEGKDL+V+VMS+MGEE+IC+LKDIGPK
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. TrEMBL
Match: A0A0A0KU59_CUCSA (Eukaryotic translation initiation factor 5A OS=Cucumis sativus GN=Csa_5G606480 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.1e-82
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           V IDIFT+KKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLP D
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           + L+TQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 DGLLTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. TrEMBL
Match: A0A097HTR8_9LAMI (Eukaryotic translation initiation factor 5A OS=Lindernia brevidens PE=2 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-82
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFT KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTD+GNTKDDLRLP D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ESL+TQIKDGF EGKDL+V+VMSSMGEEQICALKDIGPK
Sbjct: 121 ESLLTQIKDGFGEGKDLVVSVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. TrEMBL
Match: T1W2Z4_9LAMI (Eukaryotic translation initiation factor 5A OS=Picrorhiza kurrooa GN=eIF5A PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.9e-82
Identity = 149/159 (93.71%), Postives = 158/159 (99.37%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFTSKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTD+GNTKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           +SL+TQIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. TrEMBL
Match: A0A097HTP7_9LAMI (Eukaryotic translation initiation factor 5A OS=Lindernia subracemosa PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.2e-82
Identity = 149/159 (93.71%), Postives = 156/159 (98.11%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFT KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTD+GNTKDDLRLP D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+L+ QIKDGFAEGKDL+V+VMSSMGEEQICALKDIGPK
Sbjct: 121 ENLLAQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. TrEMBL
Match: B3TLM2_ELAGV (Eukaryotic translation initiation factor 5A OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.2e-82
Identity = 148/159 (93.08%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAID+FT+KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTDSGNTKDDLRLP D
Sbjct: 61  VAIDVFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDSGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+L+ QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 121 ETLLAQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. TAIR10
Match: AT1G13950.1 (AT1G13950.1 eukaryotic elongation factor 5A-1)

HSP 1 Score: 288.5 bits (737), Expect = 2.5e-78
Identity = 139/159 (87.42%), Postives = 153/159 (96.23%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES +DAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFTSKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDG++SLLTD+G+TKDDL+LPND
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ++L+ QIK GF +GKDL+V+VMS+MGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]
BLAST of Cp4.1LG01g12200 vs. TAIR10
Match: AT1G69410.1 (AT1G69410.1 eukaryotic elongation factor 5A-3)

HSP 1 Score: 285.8 bits (730), Expect = 1.6e-77
Identity = 134/159 (84.28%), Postives = 153/159 (96.23%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFES +DAGASKTYPQQAG IRK G+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFTSKKLEDIVPSSHNCDVPHV+R DYQLIDISEDGF+SLLTD+G+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+L+TQ+K+GF EGKD++V+VMS+MGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]
BLAST of Cp4.1LG01g12200 vs. TAIR10
Match: AT1G26630.1 (AT1G26630.1 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein)

HSP 1 Score: 264.2 bits (674), Expect = 5.1e-71
Identity = 124/157 (78.98%), Postives = 144/157 (91.72%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFT+KKLEDIVPSSHNCDVPHV+R DYQLIDI+EDGF+SLLTDSG TKDDL+LP D
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIG 158
           + L  Q++ GF EGKD++V+VMSSMGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]
BLAST of Cp4.1LG01g12200 vs. NCBI nr
Match: gi|449434746|ref|XP_004135157.1| (PREDICTED: eukaryotic translation initiation factor 5A-2-like [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 1.6e-82
Identity = 152/159 (95.60%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           V IDIFT+KKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLP D
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           + L+TQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 DGLLTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. NCBI nr
Match: gi|696586042|gb|AIT51844.1| (eukaryotic translation initiation factor 5A [Lindernia brevidens])

HSP 1 Score: 313.5 bits (802), Expect = 2.1e-82
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFT KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTD+GNTKDDLRLP D
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ESL+TQIKDGF EGKDL+V+VMSSMGEEQICALKDIGPK
Sbjct: 121 ESLLTQIKDGFGEGKDLVVSVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. NCBI nr
Match: gi|532759673|gb|AGU01536.1| (eukaryotic translation initiation factor 5A [Picrorhiza kurrooa])

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-82
Identity = 149/159 (93.71%), Postives = 158/159 (99.37%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAIDIFTSKKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTD+GNTKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           +SL+TQIKDGFAEGKDL+V+VMS+MGEEQICALKDIGPK
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. NCBI nr
Match: gi|659091170|ref|XP_008446407.1| (PREDICTED: eukaryotic translation initiation factor 5A-2-like [Cucumis melo])

HSP 1 Score: 312.8 bits (800), Expect = 3.5e-82
Identity = 151/159 (94.97%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           V IDIFT+KKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSG+TKDDLRLP D
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGSTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           ++L++QIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK
Sbjct: 121 DNLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159

[Close]
BLAST of Cp4.1LG01g12200 vs. NCBI nr
Match: gi|743878693|ref|XP_010908239.1| (PREDICTED: eukaryotic translation initiation factor 5A-2-like [Elaeis guineensis])

HSP 1 Score: 312.0 bits (798), Expect = 6.0e-82
Identity = 148/159 (93.08%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPND 120
           VAID+FT+KKLEDIVPSSHNCDVPHV+RTDYQLIDISEDGF+SLLTDSGNTKDDLRLP D
Sbjct: 61  VAIDVFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDSGNTKDDLRLPTD 120

Query: 121 ESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 160
           E+L+ QIKDGFAEGKDL+VTVMS+MGEEQICALKDIGPK
Sbjct: 121 ETLLAQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g12200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF5A2_NICPL4.6e-8291.19Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EI... [more]
IF5A4_SOLTU5.1e-8191.19Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=... [more]
IF5A3_SOLLC8.7e-8191.19Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1[more]
IF5A2_MEDSA1.5e-8089.31Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1[more]
IF5A_MANES4.3e-8088.05Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2[more]
BLAST of Cp4.1LG01g12200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU59_CUCSA1.1e-8295.60Eukaryotic translation initiation factor 5A OS=Cucumis sativus GN=Csa_5G606480 P... [more]
A0A097HTR8_9LAMI1.4e-8294.34Eukaryotic translation initiation factor 5A OS=Lindernia brevidens PE=2 SV=1[more]
T1W2Z4_9LAMI1.9e-8293.71Eukaryotic translation initiation factor 5A OS=Picrorhiza kurrooa GN=eIF5A PE=2 ... [more]
A0A097HTP7_9LAMI4.2e-8293.71Eukaryotic translation initiation factor 5A OS=Lindernia subracemosa PE=2 SV=1[more]
B3TLM2_ELAGV4.2e-8293.08Eukaryotic translation initiation factor 5A OS=Elaeis guineensis var. tenera PE=... [more]
BLAST of Cp4.1LG01g12200 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13950.12.5e-7887.42 eukaryotic elongation factor 5A-1[more]
AT1G69410.11.6e-7784.28 eukaryotic elongation factor 5A-3[more]
AT1G26630.15.1e-7178.98 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein[more]
BLAST of Cp4.1LG01g12200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434746|ref|XP_004135157.1|1.6e-8295.60PREDICTED: eukaryotic translation initiation factor 5A-2-like [Cucumis sativus][more]
gi|696586042|gb|AIT51844.1|2.1e-8294.34eukaryotic translation initiation factor 5A [Lindernia brevidens][more]
gi|532759673|gb|AGU01536.1|2.7e-8293.71eukaryotic translation initiation factor 5A [Picrorhiza kurrooa][more]
gi|659091170|ref|XP_008446407.1|3.5e-8294.97PREDICTED: eukaryotic translation initiation factor 5A-2-like [Cucumis melo][more]
gi|743878693|ref|XP_010908239.1|6.0e-8293.08PREDICTED: eukaryotic translation initiation factor 5A-2-like [Elaeis guineensis... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006452translational frameshifting
GO:0045905positive regulation of translational termination
GO:0045901positive regulation of translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
GO:0003746translation elongation factor activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020189Transl_elong_IF5A_C
IPR019769Trans_elong_IF5A_hypusine_site
IPR014722Rib_L2_dom2
IPR012340NA-bd_OB-fold
IPR008991Translation_prot_SH3-like_sf
IPR001884IF5A-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006452 translational frameshifting
biological_process GO:0032955 regulation of barrier septum assembly
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g12200.1Cp4.1LG01g12200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001884Translation elongation factor IF5APIRPIRSF003025Transl_init_eIF5Acoord: 1..157
score: 2.7
IPR001884Translation elongation factor IF5APANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A-RELATEDcoord: 2..159
score: 1.4E
IPR001884Translation elongation factor IF5ATIGRFAMsTIGR00037TIGR00037coord: 17..153
score: 5.9
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 15..93
score: 9.53
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 86..157
score: 1.0
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 86..156
score: 4.28
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 15..84
score: 3.7
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
scor
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 85..154
score: 6.5
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 85..154
score: 1.6
NoneNo IPR availablePANTHERPTHR11673:SF8SUBFAMILY NOT NAMEDcoord: 2..159
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g12200Cucsa.284720Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g12200CmaCh18G011220Cucurbita maxima (Rimu)cmacpeB432
Cp4.1LG01g12200CmaCh04G016850Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g12200CmoCh04G017670Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g12200CmoCh18G011440Cucurbita moschata (Rifu)cmocpeB395
Cp4.1LG01g12200Cla010217Watermelon (97103) v1cpewmB432
Cp4.1LG01g12200Csa5G606480Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g12200MELO3C012131Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g12200ClCG05G023950Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g12200CSPI05G24100Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g12200Lsi04G003850Bottle gourd (USVL1VR-Ls)cpelsiB360
Cp4.1LG01g12200MELO3C012131.2Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g12200CsaV3_5G033100Cucumber (Chinese Long) v3cpecucB0518
Cp4.1LG01g12200Bhi07G001241Wax gourdcpewgoB0568
Cp4.1LG01g12200CsGy5G023650Cucumber (Gy14) v2cgybcpeB626
Cp4.1LG01g12200Carg14381Silver-seed gourdcarcpeB0344
Cp4.1LG01g12200Carg17296Silver-seed gourdcarcpeB0148
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g12200Cp4.1LG09g02210Cucurbita pepo (Zucchini)cpecpeB034
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g12200Melon (DHL92) v3.5.1cpemeB392
Cp4.1LG01g12200Cucumber (Gy14) v2cgybcpeB060
Cp4.1LG01g12200Cucumber (Gy14) v2cgybcpeB061
Cp4.1LG01g12200Melon (DHL92) v3.6.1cpemedB454
Cp4.1LG01g12200Melon (DHL92) v3.6.1cpemedB459
Cp4.1LG01g12200Silver-seed gourdcarcpeB0069
Cp4.1LG01g12200Cucumber (Chinese Long) v3cpecucB0470
Cp4.1LG01g12200Cucumber (Chinese Long) v3cpecucB0471
Cp4.1LG01g12200Wax gourdcpewgoB0507
Cp4.1LG01g12200Wax gourdcpewgoB0550
Cp4.1LG01g12200Wax gourdcpewgoB0581
Cp4.1LG01g12200Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG01g12200Cucurbita pepo (Zucchini)cpecpeB390
Cp4.1LG01g12200Cucumber (Gy14) v1cgycpeB0256
Cp4.1LG01g12200Cucurbita maxima (Rimu)cmacpeB478
Cp4.1LG01g12200Cucurbita moschata (Rifu)cmocpeB436
Cp4.1LG01g12200Wild cucumber (PI 183967)cpecpiB379
Cp4.1LG01g12200Cucumber (Chinese Long) v2cpecuB379
Cp4.1LG01g12200Bottle gourd (USVL1VR-Ls)cpelsiB331
Cp4.1LG01g12200Watermelon (Charleston Gray)cpewcgB385
Cp4.1LG01g12200Watermelon (97103) v1cpewmB448