Cp4.1LG01g11860 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g11860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMADS-box transcription factor
LocationCp4.1LG01 : 5782719 .. 5785746 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGGGAATGAGGTGTAACCCTAGATGAGAGGGGATGAGAGGAGATGAGAGGAGATGAGATGAGAGCATAAAAGAAGGAAAAGAAAAGAAAGAAAGAAAAAAAAGGATGGGGGGGTTTTGTGTTGTTAGTTTAGTTTGTGGGAGAGAGAGAGAGAGAGGAGGTCGGAGAAAGCTGTGAAGAATATAAATAGAAAGGCACATAGGATAGGTTAAGCAAGTAAAGAGGAAAGAAGGAGAGGAAAAACAAAGATGGGAAGAGGGAGAGTAGAGCTGAAGAGAATAGAAAACAAGATCAATAGGCAAGTCACCTTCGCTAAACGGAGAAATGGGGTTTTGAAGAAAGCTTATGAGCTCTCCGTTCTGTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTCTACGAGTTTTGCAGTAGTTCAAGGTATGTCATCACTTTTAACAAACTTAACTTCAATCATTCTACTTTGTTTTGTTTTTTTTTTTTTTAAAGCAGTTTCAACCCAACCATTCCCTCAGATCTGCTCCTTCTCTTCTGTTTCTAAATTTTTGGTATCCCATTTTCCCCCATACTTTCCCTTTTCCTTTTTTTCTCTTTCTCCTCTTTCTTTTTAACCCTTTTCATGCTAACTTCTTTTCTTTTTCCTTTTCAAAATTTAAATTTAAATTAAATTAGGGTTTTCTTCTCAACCCCTTTTCTTTGCTTCTCCTTCTTTCTTTCTCTATGGGGCGATGGATGGATCAATTTAAAGCTCAACCTCACGCTTTCTTATACTTTGCATTTCTCAAATTAGGGTTCTTCTTTTTTTCTCCCACTAATTTAGAGTTTGGTTTCTTTCTTTTTCTCCCTTTATGGGATTTTTGTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTGCCTCCCATTGTATTTGTGAACCCAAACGAGAGTTAATTATAACTAGGTTTACTTTTTTCTTCTTTTTTTTTGGGAAAAAAAATTAGAATCTTATGTATATGTCAGAACCCAGAAATGGATTTATGCAATTAACCATCTTTGTTTTTTGTATTTTGAAGCTCACAAATGGTTTTCACCTTTACTCACACAAACATCCTTCATTATATGTAATTTATTTGTTCTAATAACTACTCATGTTTGTAAGGTTAGATTATAGAAAATGCCTCTAAAAGTTGAATTAATTGTTTTTAGTTTATATTATTATTATTACGTGTGAAATCCAGCATGCTGAAAACATTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGGCGAATGTGTCCACAAGAGAGGCCTTGGTAATCACTCTTACTTTTCAGTTATCCATTTTCATTTAATTATTTTATGTTTTCAATTTCTAATTTGAAAAATGTGTCCGAAAATGAAAATGAGTATATGGATGGGTTAAATATAGGAAGTGAGCAGCCAGCAGGAGTATTTGAAGCTTAAAGCTCGCTACGAAGCTCTGCAACGATCCCAAAGGCAATATAATAACCCCACCCTTTTATAGTCCTTTTACTTTCCATCTTTACTCATACGTAAATGGTAATTGAATTAAGCAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCCCTTGAAAGGCAACTTGATATGTCACTCAAGCACATAAGGTCAACAAGGGTAATTCTTCTTCAAACTTCAACTTCAAACCTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAATTCCTTTTCAATCCTTTTTCAGACTCAGTACATGTTAGATCAACTCACCGATCTTCAACGTAAGGTATTTCTATTCTATTTCCATCCTTCAACTTTCCTTATTCTTTCATGTTTCTTAACCAATTTAAATTAACCATCTTTTGTTTGTTTCAACTTTCACTTTCAGGAGCATCTTCTTAACGACGCAAACAGGACTCTGAAACAAAGGGTATATCTTTTTAAATTAAAAAAAAAAAAGAAAAAAAGAAAAAAAAGGAAAATGTTGGTGGTTTTGTAATTGGTGTTTAAGTTTTGGATTGCAGTTAGTAGAAGGGTATCAAGTAAATGCTCTCCAATTGAACCAAAGTGGTGATGATATGATGTATGGAAGACACCAAGCTCACCCTCCACCCGATGCCTTCTTCCATCTTTTAGATGCCGAACCCACCTTACAAATTGGGTAAATATTCTTCTATTCTGTCCACAATCTTTCATCCTATATTTCCTTTTCCATTCTTTTTATTTATTTATTAACTCAATTATGTATGTTTGAGAACTCAACATTTCCTTCCTACCTACATCACATATTTATGTACAATACTCTTGTTTCTTCTACTTTGTGTTTCTTCTACTTTGTGTTTCTTCTACTTTGTGTTTCTTCTACTTTGTGTTTCTTCTACTTTGTGTTTCTTCTACTTTGTGTTTCTTCTACTTCGTGTTTCTTCTACTTTGTGTTTCTTCTACTTCGTGTTTCTTCTACTTTGTGTTTCACAACTCTAAACTTAAGCTTATGTACTCTATATTTCAATTTCTAAACTAATTAGTTTCATGAGATTCAAGATTTGAAAGATTAAGCTGCAAAGCACAAGGGCAAGAATCATTAAATTGATATATAAAATGCTTAATTTGCTTTGCAGGTATCACCCAGATCCGCTAACAGTGGTCACCGCTGGGCCAAGCATGAATAATTTCCTCCCAGGGTGGTTGCCTTGAGAAACAAAAAGATGGGAGTTCTTCCATTCAAAAAATTATTTAAAAAAAAGGGGAAAAAAAAAACATTTTTCAATGCTTGAAACTTATATATCTAATTAATATAAACTCTGCACTTTAGTCTTTGTAAGCCAATTGTGTGTATGTTATGCCACATTCCTTTCTCTTACACCTCAAGACTCTGCTTTTCGAATGTAATTTCATTGTTTTCTTGTTTGTCATAAAGTTGTAAGTTTGTGTGTATTTTGATTCTCACATGCTAAAATCTTTCCAACTCTAATTCTAATTCT

mRNA sequence

TGAGGGAATGAGGTGTAACCCTAGATGAGAGGGGATGAGAGGAGATGAGAGGAGATGAGATGAGAGCATAAAAGAAGGAAAAGAAAAGAAAGAAAGAAAAAAAAGGATGGGGGGGTTTTGTGTTGTTAGTTTAGTTTGTGGGAGAGAGAGAGAGAGAGGAGGTCGGAGAAAGCTGTGAAGAATATAAATAGAAAGGCACATAGGATAGGTTAAGCAAGTAAAGAGGAAAGAAGGAGAGGAAAAACAAAGATGGGAAGAGGGAGAGTAGAGCTGAAGAGAATAGAAAACAAGATCAATAGGCAAGTCACCTTCGCTAAACGGAGAAATGGGGTTTTGAAGAAAGCTTATGAGCTCTCCGTTCTGTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTCTACGAGTTTTGCAGTAGTTCAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCCCTTGAAAGGCAACTTGATATGTCACTCAAGCACATAAGGTCAACAAGGACTCAGTACATGTTAGATCAACTCACCGATCTTCAACGTAAGGAGCATCTTCTTAACGACGCAAACAGGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTCCAATTGAACCAAAGTGGTGATGATATGATGTATGGAAGACACCAAGCTCACCCTCCACCCGATGCCTTCTTCCATCTTTTAGATGCCGAACCCACCTTACAAATTGGGTATCACCCAGATCCGCTAACAGTGGTCACCGCTGGGCCAAGCATGAATAATTTCCTCCCAGGGTGGTTGCCTTGAGAAACAAAAAGATGGGAGTTCTTCCATTCAAAAAATTATTTAAAAAAAAGGGGAAAAAAAAAACATTTTTCAATGCTTGAAACTTATATATCTAATTAATATAAACTCTGCACTTTAGTCTTTGTAAGCCAATTGTGTGTATGTTATGCCACATTCCTTTCTCTTACACCTCAAGACTCTGCTTTTCGAATGTAATTTCATTGTTTTCTTGTTTGTCATAAAGTTGTAAGTTTGTGTGTATTTTGATTCTCACATGCTAAAATCTTTCCAACTCTAATTCTAATTCT

Coding sequence (CDS)

ATGGGAAGAGGGAGAGTAGAGCTGAAGAGAATAGAAAACAAGATCAATAGGCAAGTCACCTTCGCTAAACGGAGAAATGGGGTTTTGAAGAAAGCTTATGAGCTCTCCGTTCTGTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTCTACGAGTTTTGCAGTAGTTCAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCCCTTGAAAGGCAACTTGATATGTCACTCAAGCACATAAGGTCAACAAGGACTCAGTACATGTTAGATCAACTCACCGATCTTCAACGTAAGGAGCATCTTCTTAACGACGCAAACAGGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTCCAATTGAACCAAAGTGGTGATGATATGATGTATGGAAGACACCAAGCTCACCCTCCACCCGATGCCTTCTTCCATCTTTTAGATGCCGAACCCACCTTACAAATTGGGTATCACCCAGATCCGCTAACAGTGGTCACCGCTGGGCCAAGCATGAATAATTTCCTCCCAGGGTGGTTGCCTTGA

Protein sequence

MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNFLPGWLP
Homology
[Close]
BLAST of Cp4.1LG01g11860 vs. Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 218.4 bits (555), Expect = 6.9e-56
Identity = 137/242 (56.61%), Postives = 151/242 (62.40%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAY--------------------------E 60
           MGRGRVELKRIENKINRQVTFAKRRNG+LKKAY                           
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  LSVLCDAE-----------------VALIIFSNRGKL-----YEFCS-SSRNLLGEDLGP 120
            S+L   E                  AL I S +  L     YE    S RNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVN 180
           L+SKELESLERQLDMSLK IRSTRTQ MLDQL DLQRKEH LN+ANRTLKQRL+EG  +N
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN 180

Query: 181 ALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNFLPGW 194
            LQ  Q+  D+ YGR       D FFH L+ EPTLQIGY  DP+TV  AGPS+NN++ GW
Sbjct: 181 -LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQNDPITVGGAGPSVNNYMAGW 240

[Close]
BLAST of Cp4.1LG01g11860 vs. Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.3e-45
Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 1 

Query: 60  SSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRT 119
           S RNL+GEDLGPLSSK+LE+LERQLD SLK IRSTRTQ+MLDQL DLQRKEHLL +ANR 
Sbjct: 111 SQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRA 170

Query: 120 LKQRLVEGYQVNALQLNQSGDDMMYGR-HQAHPPPDAFFHL--LDAEPTLQIGYHP-DPL 179
           L+QR+ EGYQ+N+LQLN S +DM YGR HQ H   D  F +  ++ EPTLQIGYH  DP 
Sbjct: 171 LRQRM-EGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPG 230

Query: 180 TVVTAGPSMNNFLPGWLP 194
           +VVTAGPSMNN++ GWLP
Sbjct: 231 SVVTAGPSMNNYMGGWLP 247

[Close]
BLAST of Cp4.1LG01g11860 vs. Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.2e-41
Identity = 108/242 (44.63%), Postives = 130/242 (53.72%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKK----------------------------- 60
           MGRGRVELK IENKINRQVTFAKRR  +LKK                             
Sbjct: 1   MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  --------AYELSVLCDAEVALIIFSNRGKLYEFCS----------SSRNLLGEDLGPLS 120
                    Y+       E  +I    +    E+            S RNLLGEDLGPL 
Sbjct: 61  TSMLKTLEKYQKCNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLG 120

Query: 121 SKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVNAL 180
           SKELE LERQLD SL+ IRSTRTQ+MLDQL DLQR+E +L +AN+TLK+R  E  Q N  
Sbjct: 121 SKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQ 180

Query: 181 QLNQSGDD--MMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNFL-PG 193
           Q+    +   + YGR  A    +AF+H L+ EPTLQIGYH D         ++NN++ PG
Sbjct: 181 QVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATASTVNNYMPPG 240

[Close]
BLAST of Cp4.1LG01g11860 vs. Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 114/249 (45.78%), Postives = 137/249 (55.02%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNG+LKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SRNLLGED------LGP---------LSSKELESLERQLDMSLKHIRSTRTQYML--DQL 120
           S  +   +       GP           + EL S +  L +  ++    RTQ  L  + L
Sbjct: 61  SSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 TDLQRKEH----------------------------------LLNDANRTLKQRLVEGYQ 180
             L  KE                                   +LN+ N+TL+ RL +GYQ
Sbjct: 121 GPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQ 180

Query: 181 VNALQLNQSGDD--MMYGRH---QAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSM 194
           +  LQLN + +D  + YGRH   Q      AFF  L+ EP LQ+GY       + AGPS 
Sbjct: 181 M-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHGMEAGPSE 240

[Close]
BLAST of Cp4.1LG01g11860 vs. Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.7e-35
Identity = 101/186 (54.30%), Postives = 110/186 (59.14%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKK----------------------------- 60
           MGRGRVELKRIE KINRQVTFAKRRNG+LKK                             
Sbjct: 1   MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  -----AYELSVLCD---------AEVALIIFSN------RGKLYEFCSSSRNLLGEDLGP 120
                  E    C+            AL I S       +G+      S RNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVN 138
           L+SKELESLERQLDMSLK IRSTRTQ MLDQLTD QRKEH LN+ANRTLKQRL+EG Q+N
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQLN 180

[Close]
BLAST of Cp4.1LG01g11860 vs. TrEMBL
Match: A0A0A0K9N5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095270 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.4e-62
Identity = 122/134 (91.04%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 60  SSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRT 119
           S RNLLGEDLGPLSSKELESLERQLDMSLK IRSTRTQYMLDQLTDLQRKEHLLN+AN+T
Sbjct: 47  SQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKT 106

Query: 120 LKQRLVEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVT 179
           LKQRLVEGYQVNALQLNQS DDMMYGR QA PP DAFFH LD EPTLQIGY PDP+TVVT
Sbjct: 107 LKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVT 166

Query: 180 AGPSMNNFLPGWLP 194
           AGPSMNNFLPGWLP
Sbjct: 167 AGPSMNNFLPGWLP 180

[Close]
BLAST of Cp4.1LG01g11860 vs. TrEMBL
Match: V9PDT1_CUCME (Sepallata 3-like MADS-box protein OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.6e-62
Identity = 121/134 (90.30%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 60  SSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRT 119
           S RNLLGEDLGPLSSKELE+LERQLDMSLK IRSTRTQYMLDQLTDLQRKEHLLN+AN+T
Sbjct: 109 SQRNLLGEDLGPLSSKELENLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKT 168

Query: 120 LKQRLVEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVT 179
           LKQRLVEGYQVNALQLNQS DDMMYGR QA PP DAFFH LD EPTLQIGY PDP+TVVT
Sbjct: 169 LKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVT 228

Query: 180 AGPSMNNFLPGWLP 194
           AGPSMNNFLPGWLP
Sbjct: 229 AGPSMNNFLPGWLP 242

[Close]
BLAST of Cp4.1LG01g11860 vs. TrEMBL
Match: A0A0D2S4V4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G180300 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.2e-61
Identity = 146/246 (59.35%), Postives = 164/246 (66.67%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAY-------------------ELSVLCDA 60
           MGRGRVELKRIENKINRQVTFAKRRNG+LKKAY                   +L   C +
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  -------------------------EVALIIFSNRGKL-----YEFCS-SSRNLLGEDLG 120
                                    E AL + S +  L     Y+    S RNLLGEDLG
Sbjct: 61  SSMIKTLERYQKCNYGAPEPNVSSREAALELSSRQEYLKLKARYDALQRSQRNLLGEDLG 120

Query: 121 PLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQV 180
           PLSSKELESLE+QLD SLK IRSTRTQYMLDQL DLQRKEHLLN+AN+TLKQRLVEGYQV
Sbjct: 121 PLSSKELESLEKQLDSSLKLIRSTRTQYMLDQLNDLQRKEHLLNEANKTLKQRLVEGYQV 180

Query: 181 NALQLNQSG-DDMMYGRHQAHPPP--DAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNF 194
           N+LQLN +  +D+ YGR Q H  P  DAFFH LD EPTLQIGY  DP++VVTAGPS+NN+
Sbjct: 181 NSLQLNPNATEDVGYGRQQVHHQPHGDAFFHPLDCEPTLQIGYQHDPMSVVTAGPSVNNY 240

[Close]
BLAST of Cp4.1LG01g11860 vs. TrEMBL
Match: A0A0B0PLJ9_GOSAR (Agamous-like MADS-box protein AGL9 OS=Gossypium arboreum GN=F383_02942 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.2e-61
Identity = 146/246 (59.35%), Postives = 164/246 (66.67%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAY-------------------ELSVLCDA 60
           MGRGRVELKRIENKINRQVTFAKRRNG+LKKAY                   +L   C +
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  -------------------------EVALIIFSNRGKL-----YEFCS-SSRNLLGEDLG 120
                                    E AL + S +  L     Y+    S RNLLGEDLG
Sbjct: 61  SSMIKTLERYQKCNYGAPEPNVSSREAALELSSRQEYLKLKARYDALQRSQRNLLGEDLG 120

Query: 121 PLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQV 180
           PLSSKELESLE+QLD SLK IRSTRTQYMLDQL DLQRKEHLLN+AN+TLKQRLVEGYQV
Sbjct: 121 PLSSKELESLEKQLDSSLKLIRSTRTQYMLDQLNDLQRKEHLLNEANKTLKQRLVEGYQV 180

Query: 181 NALQLNQSG-DDMMYGRHQAHPPP--DAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNF 194
           N+LQLN +  +D+ YGR Q H  P  DAFFH LD EPTLQIGY  DP++VVTAGPS+NN+
Sbjct: 181 NSLQLNPNATEDVGYGRQQVHHQPHGDAFFHPLDCEPTLQIGYQHDPMSVVTAGPSVNNY 240

[Close]
BLAST of Cp4.1LG01g11860 vs. TrEMBL
Match: V4TI03_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032507mg PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.7e-59
Identity = 140/243 (57.61%), Postives = 157/243 (64.61%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYEL------------------------- 60
           MGRGRVELKRIENKINRQVTFAKRRNG+LKKAYEL                         
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  ------------------SVLCDAEVALIIFSNRGKL-----YEFCS-SSRNLLGEDLGP 120
                                  A  AL + S +  L     YE    S RNLLGE+LGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP 120

Query: 121 LSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVN 180
           L+SKELESLERQLDMSLK IRSTRTQYMLD LT+LQ KE LL++AN+TLKQRL+EGYQVN
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 180

Query: 181 ALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHP-DPLTVVTAGPSMNNFLPG 194
            LQLN S +D  YG   A P  D FFH L+ EPTLQIGY P DP++VVTAGPS+NN++ G
Sbjct: 181 TLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQG 240

[Close]
BLAST of Cp4.1LG01g11860 vs. TAIR10
Match: AT1G24260.2 (AT1G24260.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 142.1 bits (357), Expect = 3.5e-34
Identity = 80/137 (58.39%), Postives = 99/137 (72.26%), Query Frame = 1 

Query: 60  SSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRT 119
           + RNLLGEDLGPLS+KELESLERQLD SLK IR+ RTQ+MLDQL DLQ KE +L + N+T
Sbjct: 111 TQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKT 170

Query: 120 LKQRLVEGYQVNALQLNQSGDDM-MYGR--HQAHPPPDAFFHLLDAEPTLQIGYHPDPLT 179
           L+ RL +GYQ+  LQLN + +++  YGR  HQ      AFF  L+ EP LQIGY      
Sbjct: 171 LRLRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ-D 230

Query: 180 VVTAGPSMNNFLPGWLP 194
            + AGPS+NN++ GWLP
Sbjct: 231 GMGAGPSVNNYMLGWLP 245

[Close]
BLAST of Cp4.1LG01g11860 vs. TAIR10
Match: AT3G02310.1 (AT3G02310.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-28
Identity = 73/153 (47.71%), Postives = 94/153 (61.44%), Query Frame = 1 

Query: 51  RGKLYEFCSSSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKE 110
           +G+        RNLLGEDLGPL+SKELE LERQLD SLK +R  +TQYMLDQL+DLQ KE
Sbjct: 99  KGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKE 158

Query: 111 HLLNDANRTLKQRLVEGYQVNALQLN---QSGD--DMMYGRHQAHPPPDAFFHLLDAEPT 170
           H+L DANR L  +L +   V    +    + GD  ++ YG  QAH      +  L+ +PT
Sbjct: 159 HILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQNIAYGHPQAH--SQGLYQSLECDPT 218

Query: 171 LQIGY-HP---DPLTVVTAGPSM--NNFLPGWL 193
           LQIGY HP   + + V   G S   N ++PGW+
Sbjct: 219 LQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249

[Close]
BLAST of Cp4.1LG01g11860 vs. TAIR10
Match: AT5G15800.2 (AT5G15800.2 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-26
Identity = 81/167 (48.50%), Postives = 103/167 (61.68%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNG+LKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SRNLLGED-----------LGPLSSKELESLERQ---LDMSLKHIRSTRTQYMLDQLTDL 120
           S  L   D           +    +KELE+  R+   L    ++++  +   + + L  L
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 QRK--EHLLNDANRTLKQ--RLVEGYQVNALQLNQSGDDMMYGRHQA 150
             K  E L    + +LKQ   +   Y ++ L   Q+ + M+   ++A
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRA 167

[Close]
BLAST of Cp4.1LG01g11860 vs. TAIR10
Match: AT2G03710.1 (AT2G03710.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-26
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
          MGRG+VELKRIENKINRQVTFAKRRNG+LKKAYELSVLCDAE+AL+IFSNRGKLYEFCSS
Sbjct: 1  MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

[Close]
BLAST of Cp4.1LG01g11860 vs. TAIR10
Match: AT5G60910.1 (AT5G60910.1 AGAMOUS-like 8)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-23
Identity = 69/174 (39.66%), Postives = 102/174 (58.62%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCS- 60
           MGRGRV+LKRIENKINRQVTF+KRR+G+LKKA+E+SVLCDAEVALI+FS++GKL+E+ + 
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query: 61  ---------------SSRNLLGEDLGPLSS------------------------KELESL 120
                          S + L+G D+    +                        ++L+SL
Sbjct: 61  SCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSL 120

Query: 121 E-RQL-------DMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVE 127
             ++L       D ++K IRS + Q M + ++ LQ+K+  L D N +L +++ E
Sbjct: 121 SLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKE 174

[Close]
BLAST of Cp4.1LG01g11860 vs. NCBI nr
Match: gi|802724393|ref|XP_012085713.1| (PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas])

HSP 1 Score: 258.8 bits (660), Expect = 7.3e-66
Identity = 147/243 (60.49%), Postives = 162/243 (66.67%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYEL------------------------- 60
           MGRGRVELKRIENKINRQVTFAKRRNG+LKKAYEL                         
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  -SVL--------CDAEVALIIFSNRGKLYEFCS----------------SSRNLLGEDLG 120
            S+L        C+        S R  L E  S                S RNLLGEDLG
Sbjct: 61  SSMLKTLERYQKCNYGAPETNVSTREALQELSSQQEYLKLKARYEALQRSQRNLLGEDLG 120

Query: 121 PLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQV 180
           PLSSKELESLERQLDMSLK IRSTRTQYMLDQLTDLQRKEH+LN+AN+TLKQRLVEGY V
Sbjct: 121 PLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHMLNEANKTLKQRLVEGYHV 180

Query: 181 NALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNFLPG 194
           N +QLN   +D+ +GR  A P  D FFH L+ EPTLQIGY PDP+TVVTAGPS+NN++PG
Sbjct: 181 NTMQLNLGAEDVGFGRQAAQPQGDGFFHPLECEPTLQIGYQPDPITVVTAGPSVNNYMPG 240

[Close]
BLAST of Cp4.1LG01g11860 vs. NCBI nr
Match: gi|1000975713|ref|XP_002514893.2| (PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X2 [Ricinus communis])

HSP 1 Score: 252.3 bits (643), Expect = 6.9e-64
Identity = 147/242 (60.74%), Postives = 162/242 (66.94%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYEL------------------------- 60
           MGRGRVELKRIENKINRQVTFAKRRNG+LKKAYEL                         
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  ------------------SVLCDAEVALIIFSNRGKL-----YEFCS-SSRNLLGEDLGP 120
                                  A  AL + S +  L     YE    S RNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVN 180
           LSSK+LESLERQLDMSLK IRSTRTQYMLDQLTDLQRKEH+LN+AN+TLKQRLVEGYQVN
Sbjct: 121 LSSKDLESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHMLNEANKTLKQRLVEGYQVN 180

Query: 181 ALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNFLPGW 194
           A+QLN S +D+ +GR  A P  D FFH LD EPTLQIGYHPD + VVTAGPS+NN++ GW
Sbjct: 181 AMQLNPSAEDVGFGRQAAQPQGDGFFHPLDCEPTLQIGYHPDQI-VVTAGPSVNNYMSGW 240

[Close]
BLAST of Cp4.1LG01g11860 vs. NCBI nr
Match: gi|449445548|ref|XP_004140534.1| (PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 4.9e-62
Identity = 122/134 (91.04%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 60  SSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRT 119
           S RNLLGEDLGPLSSKELESLERQLDMSLK IRSTRTQYMLDQLTDLQRKEHLLN+AN+T
Sbjct: 109 SQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKT 168

Query: 120 LKQRLVEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVT 179
           LKQRLVEGYQVNALQLNQS DDMMYGR QA PP DAFFH LD EPTLQIGY PDP+TVVT
Sbjct: 169 LKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVT 228

Query: 180 AGPSMNNFLPGWLP 194
           AGPSMNNFLPGWLP
Sbjct: 229 AGPSMNNFLPGWLP 242

[Close]
BLAST of Cp4.1LG01g11860 vs. NCBI nr
Match: gi|700191256|gb|KGN46460.1| (hypothetical protein Csa_6G095270 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 4.9e-62
Identity = 122/134 (91.04%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 60  SSRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRT 119
           S RNLLGEDLGPLSSKELESLERQLDMSLK IRSTRTQYMLDQLTDLQRKEHLLN+AN+T
Sbjct: 47  SQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKT 106

Query: 120 LKQRLVEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVT 179
           LKQRLVEGYQVNALQLNQS DDMMYGR QA PP DAFFH LD EPTLQIGY PDP+TVVT
Sbjct: 107 LKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVT 166

Query: 180 AGPSMNNFLPGWLP 194
           AGPSMNNFLPGWLP
Sbjct: 167 AGPSMNNFLPGWLP 180

[Close]
BLAST of Cp4.1LG01g11860 vs. NCBI nr
Match: gi|1000975711|ref|XP_015572264.1| (PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X1 [Ricinus communis])

HSP 1 Score: 245.4 bits (625), Expect = 8.4e-62
Identity = 147/249 (59.04%), Postives = 162/249 (65.06%), Query Frame = 1 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYEL------------------------- 60
           MGRGRVELKRIENKINRQVTFAKRRNG+LKKAYEL                         
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  ------------------SVLCDAEVALIIFSNRGKL-----YEFCS-SSRNLLGEDLGP 120
                                  A  AL + S +  L     YE    S RNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQR-------L 180
           LSSK+LESLERQLDMSLK IRSTRTQYMLDQLTDLQRKEH+LN+AN+TLKQR       L
Sbjct: 121 LSSKDLESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHMLNEANKTLKQRVGYSPNYL 180

Query: 181 VEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSM 194
           VEGYQVNA+QLN S +D+ +GR  A P  D FFH LD EPTLQIGYHPD + VVTAGPS+
Sbjct: 181 VEGYQVNAMQLNPSAEDVGFGRQAAQPQGDGFFHPLDCEPTLQIGYHPDQI-VVTAGPSV 240

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g11860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL9_PETHY6.9e-5656.61Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2[more]
MTF1_PEA9.3e-4570.29MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1[more]
AGL9_ARADE8.2e-4144.63Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1[more]
AGL9_SINAL1.0e-3845.78Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1[more]
AGL9_SOLLC8.7e-3554.30Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 ... [more]
BLAST of Cp4.1LG01g11860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9N5_CUCSA3.4e-6291.04Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095270 PE=4 SV=1[more]
V9PDT1_CUCME7.6e-6290.30Sepallata 3-like MADS-box protein OS=Cucumis melo PE=2 SV=1[more]
A0A0D2S4V4_GOSRA2.2e-6159.35Uncharacterized protein OS=Gossypium raimondii GN=B456_012G180300 PE=4 SV=1[more]
A0A0B0PLJ9_GOSAR2.2e-6159.35Agamous-like MADS-box protein AGL9 OS=Gossypium arboreum GN=F383_02942 PE=4 SV=1[more]
V4TI03_9ROSI2.7e-5957.61Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032507mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g11860 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24260.23.5e-3458.39 K-box region and MADS-box transcription factor family protein [more]
AT3G02310.14.9e-2847.71 K-box region and MADS-box transcription factor family protein [more]
AT5G15800.21.6e-2648.50 K-box region and MADS-box transcription factor family protein [more]
AT2G03710.12.7e-2693.33 K-box region and MADS-box transcription factor family protein [more]
AT5G60910.11.3e-2339.66 AGAMOUS-like 8[more]
BLAST of Cp4.1LG01g11860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|802724393|ref|XP_012085713.1|7.3e-6660.49PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curca... [more]
gi|1000975713|ref|XP_002514893.2|6.9e-6460.74PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X2 [Ricinus commun... [more]
gi|449445548|ref|XP_004140534.1|4.9e-6291.04PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X1 [Cucumis sativu... [more]
gi|700191256|gb|KGN46460.1|4.9e-6291.04hypothetical protein Csa_6G095270 [Cucumis sativus][more]
gi|1000975711|ref|XP_015572264.1|8.4e-6259.04PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X1 [Ricinus commun... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002487TF_Kbox
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001708 cell fate specification
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048481 plant ovule development
biological_process GO:0010093 specification of floral organ identity
biological_process GO:0048833 specification of floral organ number
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g11860.1Cp4.1LG01g11860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 1.6E-32coord: 3..23
score: 1.6E-32coord: 23..38
score: 1.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
score: 1.6
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 7.4
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
scor
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..61
score: 33
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 2..63
score: 8.63
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 59..124
score: 1.1
IPR002487Transcription factor, K-boxPROFILEPS51297K_BOXcoord: 40..136
score: 10
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..193
score: 5.4
NoneNo IPR availablePANTHERPTHR11945:SF231SUBFAMILY NOT NAMEDcoord: 2..193
score: 5.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g11860Cucsa.349640Cucumber (Gy14) v1cgycpeB0913
Cp4.1LG01g11860CmaCh17G014380Cucurbita maxima (Rimu)cmacpeB398
Cp4.1LG01g11860CmaCh08G001720Cucurbita maxima (Rimu)cmacpeB920
Cp4.1LG01g11860CmoCh17G013770Cucurbita moschata (Rifu)cmocpeB360
Cp4.1LG01g11860CmoCh08G001750Cucurbita moschata (Rifu)cmocpeB856
Cp4.1LG01g11860Csa6G095270Cucumber (Chinese Long) v2cpecuB464
Cp4.1LG01g11860MELO3C022316Melon (DHL92) v3.5.1cpemeB389
Cp4.1LG01g11860ClCG06G002130Watermelon (Charleston Gray)cpewcgB402
Cp4.1LG01g11860CSPI06G07820Wild cucumber (PI 183967)cpecpiB465
Cp4.1LG01g11860MELO3C022316.2Melon (DHL92) v3.6.1cpemedB449
Cp4.1LG01g11860Carg11597Silver-seed gourdcarcpeB0024
Cp4.1LG01g11860Carg05001Silver-seed gourdcarcpeB0127
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g11860Wax gourdcpewgoB0495
Cp4.1LG01g11860Wax gourdcpewgoB0553
Cp4.1LG01g11860Cucurbita pepo (Zucchini)cpecpeB331
Cp4.1LG01g11860Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g11860Cucumber (Gy14) v1cgycpeB0387
Cp4.1LG01g11860Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g11860Cucurbita maxima (Rimu)cmacpeB722
Cp4.1LG01g11860Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g11860Cucurbita moschata (Rifu)cmocpeB674
Cp4.1LG01g11860Wild cucumber (PI 183967)cpecpiB437
Cp4.1LG01g11860Cucumber (Chinese Long) v2cpecuB437
Cp4.1LG01g11860Bottle gourd (USVL1VR-Ls)cpelsiB312
Cp4.1LG01g11860Bottle gourd (USVL1VR-Ls)cpelsiB354
Cp4.1LG01g11860Watermelon (Charleston Gray)cpewcgB409
Cp4.1LG01g11860Watermelon (97103) v1cpewmB417
Cp4.1LG01g11860Watermelon (97103) v1cpewmB471
Cp4.1LG01g11860Melon (DHL92) v3.5.1cpemeB365
Cp4.1LG01g11860Cucumber (Gy14) v2cgybcpeB646
Cp4.1LG01g11860Cucumber (Gy14) v2cgybcpeB802
Cp4.1LG01g11860Melon (DHL92) v3.6.1cpemedB441
Cp4.1LG01g11860Silver-seed gourdcarcpeB0938
Cp4.1LG01g11860Silver-seed gourdcarcpeB1259
Cp4.1LG01g11860Cucumber (Chinese Long) v3cpecucB0541
Cp4.1LG01g11860Cucumber (Chinese Long) v3cpecucB0573