Cp4.1LG01g10530 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g10530
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA binding protein, putative
Location	Cp4.1LG01 : 6538968 .. 6542897 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGCTTCCCTCAACATGATGAATTGGCCAATGCATCACTTCTCTTTCTTTTTTACAACTTCCATTGCCTTCCTCTAAACTTCTATTCCATCTTCTTCCATTCATCATTGCATGCTTTGGAATCAAAACCAGAGGAAATACACACATACCCATCAATACCCATCATGTCTTTTTAACCCAAATACTTGAACCCCTCCTTTCCTTTTGAGTTATTGTTTCATAAATTTCGAATTTGAGCGTTTTTCTTTATGTGAATTCTATCGTATTCTTCGATTCTCTTCGTGGGTTCTTGTGGGTGTTTCTTCTTTTGCCTCATCTTTGCTTCTTTTTCGAGTTTCTAATGGGACCCATTAGAGGGTTCAAGAGGAAGAAGCAGAAGAAGGCACAGAAAAAGGTTGTCCAATATGTCTTCGCTGCTGCTTCACTGTCGTTTCAGCCACAGCCCTTGGATTGGTGGGATGAGTTCTCACAGAGGATTACTGGTAAACCACTTTTTGCTTCTCTTCTACTTGAATTTGTGCATTGTTATTGCTCTTAGTTGCTTTCTGTTTATTGGGTCTCTCCGTTGAATTCTTTTGCTGTTTGGTGAGCTTTTTGGACGGTGGTGGAATGTAGTGTTTAATAATCATATATCTTTGATGCCTGCAATTATAGAACCATGATATGTTCCTAATAACATTGAGAGGGTTAGAAGGGGCAGCCTGTTGAAGTGATCCTATGGGCATGGAGATGGATCAACCCTGTTTAGCAGCAGATATTAGCATAGATATGTTAGTTCATTTGATAATTGATGTGTACAAGTTGTGGCTACTCACTTAGCTGGTTTATAGAGTGTTAACTGTGTTGTGTTCTGATGTTCTTCTTCTTTTTCTCATTGAATTGTTGAAATATTAATTATTTCTTAGCTGCTCCTACTTTTTTGAGCTTTGGTCACTGTAACGGCCCCAATCCCACCGCTAGTAGATATTGTCCTCTTTCGGCTTTCCCTCAAAGTTTTTAAAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCCCCTCTCTAACCGATGTGGGATCTCACAATCCACCCCCTCTGGGGCCCAGTGTCCTTGCGGGCACTCGTTCCCCTCTCCAATCGATGTGCGATCTCACGGCAATAAACATCTTTAGAGAATTGAGTCTAATGTGATCCAAAATGCTCGTTTTATTCTTTATTGATTCGTATTAAAGATATCACTCTGAATATATAGTACCTCGAAGTTAGAATCAGTCATCTGTTGACATTTGTAAGAAGGCAGTGTCTGAGAAATCGAAGATGAAGAAGAAGGGCGGGGGATGAACAATATTCAACTTCAAGTATGTGTTTTTTATGGTCTGCTGTTGTTTATGCATAGAAATGGAAGGATGACTATAAATATCTTTATCTGGTTGTTTTAGAGGCATCTTGGAAACGGGTATGTTTAAGTTTCGATTCGAGTCAATGTAGTAATGCTACAATGCATAGAAGTTCATAGAAAATGGATCTCTTCTAGGTATTATAAGATTTGTTTCAACCTACTGATATGGCTAAGTGCTCAATATTTGATTTTGGTACTCCAGAGGACCTAACAACATGATCAAAGTGGGTAGGTTTTGTTAGATGTTAGTAAAGCAAGAAGACTAGATGAGCTTTTAACGCATGCTGGAGTCTAGTTTCACTAGATATCAGTTCTTATATTTTGATATTCCATGGTTCTGAAATGTTGGGTACACATTTAGCAGTTACTTTGTTCTGGCCATGATTTATGATGCAACAAGTAAATCTTTACTTTTAGCTTAAAACCAACGGATTTGACTAAATATGTGGACCTATGTGTAATAGCCCAAACTCACTACTAGTAGATACTGTCTTCTTTGGGATACCCTCTAGGTTTTAAAACGCGTATGTTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTTCCCTCTCCAATCAATGTGGGGTCTCACAATCCACTTCCCTTGGGGCCCAACATCTCGTTGGCACACCGTCCGGTGCATGACTCTAATACCATTTGTACCAGCTCAAGCCCACCACTAGTAGATATTATCTTCTTTGGGCTTTCCCTTTCGAGCTTCTCCTCAAGGTTTTAAAACGTATCTATTAGGGAGAGGTTTTTACACTCTTATAATGCTTCGTTCCCCTCTCTAACCAATGTGGAATCTCACAATTCACTCCTCTTGGGCGCCCAGTGTCCTCGTTCGCACACCGCTCGGTGCCTGACTCTGATACCATTTGTAATAGTCTAAGCTCACCGCTAGCAAATATTGTCTTCTTTGGACTTTTTCTTCCAGACTTCCTCTCAAAGTTTTAAAACGCGTATGTTCAGGAGAGATTTCACACCCTTGTAAAGAATGTTTTGTTCCCATCTCCAACCAATGTAGGATCTCATACAATGTGTTTGTCGAATTTTATCGTTGCATCGAGTATAAGTACAGCATTTCTTCTGGCGTTATGCTCACAAAATTTTACTTTATCTTTGTTCGGTGATCAATGAGTTGGATATATTGATCTGATATTGTCAGTTGTTCTTTCTGTCTGTCATATCTGAAAAAGTACAATGCCTTTTCTTAGTAGCAGAACATTTGCAGCAGGGACTGATTATGAGTTTTATCCTTGTTTTTGCCTCCAATCAGGACCATTATCTCAGTCCAAGAACACAAAATTTGAGTCAGTTTTCAAAATTTCAAGAAAAACATTCAGCTATATCTGTTCTCTTGTTAAGGAAGCTATGATGGCTAAAACCTCAAATTTTACCGATTTAAACGGCAAGCCTTTGTCTCTAAACGACCAAGTCGCCGTTGCTCTTAGGCGACTTTGCTCCGGTGAATCATTATCAAATATTGGTGACTCATTTGGAATGAATCAATCATCAGTTTCTCAAATAACATGGCGTTTTGTGGAGGCAATGGAAGAGAAAGGCATCCGCCATCTCTCGTGGCCTTCGACAGAAGAAGATATGGATCAGATAAAGTCCAAGTTCCAGAAAATCAGAGGTCTACCTAATTGTTGCGGTGTAATCGAAACGACGCACATTATGATGACTTTGCCAACGACAGAATCTGCAAATGGCGTCTGGCTTGATCGCGAGAAAAACTGCAGCATGATCTTGCAAGTGATTGTAGATCCAGAAATGAGATTCTGTGACATCATAACAGGTTGGCCAGGAAGCTTAAGCGATGCACTCGTGCTTGAAAGCTCAGGTTTTTTCAAACGTTCACAAGATGGCGAGCGGTTGAACGGAAAGAAGATGAAACTCTCAGAAAATTCAGAACTAGGAGAGTATATTATAGGAGACTCTGGCTTTCCACTGTTGCCATGGCTACTAACTCCTTACCAAGGGAAAGGCCTTGCAGATTACCAGACCGAGTTCAATAAGCGCCATTTCAGTACCAGGTTGGTGGCTCAAAGGGCATTGACAAGGTTGAAAGAGATGTGGAAGATCATTAAAGGGATAATGTGGAAGCCTGATAAACATAAGCTACCAAGGATCATTCTTGTTTGCTGCTTACTTCACAATATAATGATCGATATGGAGGACGAGATGCAAGACGAAATGCCGTTGTCTCATCATCACGATCCGAGTTACCGACAACAAAGTTGCAAATTCGTCGACAATACTGGTTCGATCACGAGGGAGAAACTTTCCATGTACTTATCTGAAAAGTTAACACCTTAAGAGAATCTCGTCGTGCACGAAAACATTCTTTTTTTTCTTTTCTTTTTGATAGATTGATCTGTGCTGCTGTTTATTCAAATTGCCCAAATTGTTGTTCACTCATTTAGATGCTATTGATAGTTCATTATAGATATCTCTGGTGATTATATGGTCTGCTAAATCTAAACAGATAGATACCCAGTTTCCTTCTCTACAAACATTATGCT

mRNA sequence

TGTTGCTTCCCTCAACATGATGAATTGGCCAATGCATCACTTCTCTTTCTTTTTTACAACTTCCATTGCCTTCCTCTAAACTTCTATTCCATCTTCTTCCATTCATCATTGCATGCTTTGGAATCAAAACCAGAGGAAATACACACATACCCATCAATACCCATCATGTCTTTTTAACCCAAATACTTGAACCCCTCCTTTCCTTTTGAGTTATTGTTTCATAAATTTCGAATTTGAGCGTTTTTCTTTATGTGAATTCTATCGTATTCTTCGATTCTCTTCGTGGGTTCTTGTGGGTGTTTCTTCTTTTGCCTCATCTTTGCTTCTTTTTCGAGTTTCTAATGGGACCCATTAGAGGGTTCAAGAGGAAGAAGCAGAAGAAGGCACAGAAAAAGGTTGTCCAATATGTCTTCGCTGCTGCTTCACTGTCGTTTCAGCCACAGCCCTTGGATTGGTGGGATGAGTTCTCACAGAGGATTACTGGACCATTATCTCAGTCCAAGAACACAAAATTTGAGTCAGTTTTCAAAATTTCAAGAAAAACATTCAGCTATATCTGTTCTCTTGTTAAGGAAGCTATGATGGCTAAAACCTCAAATTTTACCGATTTAAACGGCAAGCCTTTGTCTCTAAACGACCAAGTCGCCGTTGCTCTTAGGCGACTTTGCTCCGGTGAATCATTATCAAATATTGGTGACTCATTTGGAATGAATCAATCATCAGTTTCTCAAATAACATGGCGTTTTGTGGAGGCAATGGAAGAGAAAGGCATCCGCCATCTCTCGTGGCCTTCGACAGAAGAAGATATGGATCAGATAAAGTCCAAGTTCCAGAAAATCAGAGGTCTACCTAATTGTTGCGGTGTAATCGAAACGACGCACATTATGATGACTTTGCCAACGACAGAATCTGCAAATGGCGTCTGGCTTGATCGCGAGAAAAACTGCAGCATGATCTTGCAAGTGATTGTAGATCCAGAAATGAGATTCTGTGACATCATAACAGGTTGGCCAGGAAGCTTAAGCGATGCACTCGTGCTTGAAAGCTCAGGTTTTTTCAAACGTTCACAAGATGGCGAGCGGTTGAACGGAAAGAAGATGAAACTCTCAGAAAATTCAGAACTAGGAGAGTATATTATAGGAGACTCTGGCTTTCCACTGTTGCCATGGCTACTAACTCCTTACCAAGGGAAAGGCCTTGCAGATTACCAGACCGAGTTCAATAAGCGCCATTTCAGTACCAGGTTGGTGGCTCAAAGGGCATTGACAAGGTTGAAAGAGATGTGGAAGATCATTAAAGGGATAATGTGGAAGCCTGATAAACATAAGCTACCAAGGATCATTCTTGTTTGCTGCTTACTTCACAATATAATGATCGATATGGAGGACGAGATGCAAGACGAAATGCCGTTGTCTCATCATCACGATCCGAGTTACCGACAACAAAGTTGCAAATTCGTCGACAATACTGGTTCGATCACGAGGGAGAAACTTTCCATGTACTTATCTGAAAAGTTAACACCTTAAGAGAATCTCGTCGTGCACGAAAACATTCTTTTTTTTCTTTTCTTTTTGATAGATTGATCTGTGCTGCTGTTTATTCAAATTGCCCAAATTGTTGTTCACTCATTTAGATGCTATTGATAGTTCATTATAGATATCTCTGGTGATTATATGGTCTGCTAAATCTAAACAGATAGATACCCAGTTTCCTTCTCTACAAACATTATGCT

Coding sequence (CDS)

ATGGGACCCATTAGAGGGTTCAAGAGGAAGAAGCAGAAGAAGGCACAGAAAAAGGTTGTCCAATATGTCTTCGCTGCTGCTTCACTGTCGTTTCAGCCACAGCCCTTGGATTGGTGGGATGAGTTCTCACAGAGGATTACTGGACCATTATCTCAGTCCAAGAACACAAAATTTGAGTCAGTTTTCAAAATTTCAAGAAAAACATTCAGCTATATCTGTTCTCTTGTTAAGGAAGCTATGATGGCTAAAACCTCAAATTTTACCGATTTAAACGGCAAGCCTTTGTCTCTAAACGACCAAGTCGCCGTTGCTCTTAGGCGACTTTGCTCCGGTGAATCATTATCAAATATTGGTGACTCATTTGGAATGAATCAATCATCAGTTTCTCAAATAACATGGCGTTTTGTGGAGGCAATGGAAGAGAAAGGCATCCGCCATCTCTCGTGGCCTTCGACAGAAGAAGATATGGATCAGATAAAGTCCAAGTTCCAGAAAATCAGAGGTCTACCTAATTGTTGCGGTGTAATCGAAACGACGCACATTATGATGACTTTGCCAACGACAGAATCTGCAAATGGCGTCTGGCTTGATCGCGAGAAAAACTGCAGCATGATCTTGCAAGTGATTGTAGATCCAGAAATGAGATTCTGTGACATCATAACAGGTTGGCCAGGAAGCTTAAGCGATGCACTCGTGCTTGAAAGCTCAGGTTTTTTCAAACGTTCACAAGATGGCGAGCGGTTGAACGGAAAGAAGATGAAACTCTCAGAAAATTCAGAACTAGGAGAGTATATTATAGGAGACTCTGGCTTTCCACTGTTGCCATGGCTACTAACTCCTTACCAAGGGAAAGGCCTTGCAGATTACCAGACCGAGTTCAATAAGCGCCATTTCAGTACCAGGTTGGTGGCTCAAAGGGCATTGACAAGGTTGAAAGAGATGTGGAAGATCATTAAAGGGATAATGTGGAAGCCTGATAAACATAAGCTACCAAGGATCATTCTTGTTTGCTGCTTACTTCACAATATAATGATCGATATGGAGGACGAGATGCAAGACGAAATGCCGTTGTCTCATCATCACGATCCGAGTTACCGACAACAAAGTTGCAAATTCGTCGACAATACTGGTTCGATCACGAGGGAGAAACTTTCCATGTACTTATCTGAAAAGTTAACACCTTAA

Protein sequence

MGPIRGFKRKKQKKAQKKVVQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHHHDPSYRQQSCKFVDNTGSITREKLSMYLSEKLTP

Homology

[Close]

BLAST of Cp4.1LG01g10530 vs. Swiss-Prot
Match: HARB1_DANRE (Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-27
Identity = 78/291 (26.80%), Postives = 145/291 (49.83%), Query Frame = 1


Query: 60  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 119
           + F   R+   Y+  L+K++++ +T        + +S + Q+  AL    SG   S +GD
Sbjct: 37  NTFGFPREFIYYLVELLKDSLLRRTQR-----SRAISPDVQILAALGFYTSGSFQSKMGD 96

Query: 120 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETT 179
           + G++Q+S+S+      +A+ EK    + +   E    Q K +F +I G+PN  GV++  
Sbjct: 97  AIGISQASMSRCVSNVTKALIEKAPEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCA 156

Query: 180 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 239
           HI +  P  + ++  +++++   S+  Q++ D         T WPGSL+D  V + S   
Sbjct: 157 HIAIKAPNADDSS--YVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVA 216

Query: 240 KRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQG-KGLADYQTEFNKRHF 299
           K  ++            EN + G +++GD+ +PL  WL+TP Q  +  ADY+  +N  H 
Sbjct: 217 KLFEE-----------QENDDEG-WLLGDNRYPLKKWLMTPVQSPESPADYR--YNLAHT 276

Query: 300 STRLVAQRALTRLKEMWKIIKG----IMWKPDKHKLPRIILVCCLLHNIMI 346
           +T  +  R    ++  ++ + G    + + P+  K   II  CC+LHNI +
Sbjct: 277 TTHEIVDRTFRAIQTRFRCLDGAKGYLQYSPE--KCSHIIQACCVLHNISL 304

[Close]

BLAST of Cp4.1LG01g10530 vs. Swiss-Prot
Match: HARB1_MOUSE (Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-24
Identity = 78/292 (26.71%), Postives = 142/292 (48.63%), Query Frame = 1


Query: 60  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 119
           S++   R+   ++  L+  ++   T        + +S   Q+  AL    SG   + +GD
Sbjct: 37  SMYGFPRQFIYFLVELLGASLSRPTQR-----SRAISPETQILAALGFYTSGSFQTRMGD 96

Query: 120 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETT 179
           + G++Q+S+S+      EA+ E+  + + +P  E  +  +K +F  + G+P   GV +  
Sbjct: 97  AIGISQASMSRCVANVTEALVERASQFIHFPVDEAAVQSLKDEFYGLAGMPGVIGVADCI 156

Query: 180 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 239
           H+ +  P  E  +  +++R+   S+   V+ D       + T WPGSL D  VL+ S   
Sbjct: 157 HVAIKAPNAEDLS--YVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLT 216

Query: 240 KRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQ-GKGLADYQTEFNKRHF 299
            + + G         + ++S    +++GDS F L  WLLTP    +  A+Y+  +N+ H 
Sbjct: 217 SQFETG---------MPKDS----WLLGDSSFFLRSWLLTPLPIPETAAEYR--YNRAHS 276

Query: 300 STRLVAQRALTRLKEMWKIIKG----IMWKPDKHKLPRIILVCCLLHNIMID 347
           +T  V +R L  L   ++ + G    + + P+K     IIL CC+LHNI +D
Sbjct: 277 ATHSVIERTLQTLCCRFRCLDGSKGALQYSPEK--CSHIILACCVLHNISLD 304

[Close]

BLAST of Cp4.1LG01g10530 vs. Swiss-Prot
Match: HARB1_RAT (Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-24
Identity = 76/292 (26.03%), Postives = 144/292 (49.32%), Query Frame = 1


Query: 60  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 119
           S++   R+   Y+  L+  ++   T        + +S   Q+  AL    SG   + +GD
Sbjct: 37  SMYGFPRQFIYYLVELLGASLSRPTQR-----SRAISPETQILAALGFYTSGSFQTRMGD 96

Query: 120 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETT 179
           + G++Q+S+S+      EA+ E+  + + +P+ E  +  +K +F  + G+P   G ++  
Sbjct: 97  AIGISQASMSRCVANVTEALVERASQFIHFPADEAAIQSLKDEFYGLAGMPGVIGAVDCI 156

Query: 180 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 239
           H+ +  P  E  +  +++R+   S+   V+ D       + T WPGSL D  VL+ S   
Sbjct: 157 HVAIKAPNAEDLS--YVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSLS 216

Query: 240 KRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTP-YQGKGLADYQTEFNKRHF 299
            + + G         + ++S    +++GDS F L  WLLTP +  +  A+Y+  +N+ H 
Sbjct: 217 SQFETG---------MPKDS----WLLGDSSFFLHTWLLTPLHIPETPAEYR--YNRAHS 276

Query: 300 STRLVAQRALTRLKEMWKIIKG----IMWKPDKHKLPRIILVCCLLHNIMID 347
           +T  V ++ L  L   ++ + G    + + P+K     IIL CC+LHNI ++
Sbjct: 277 ATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEKSS--HIILACCVLHNISLE 304

[Close]

BLAST of Cp4.1LG01g10530 vs. TrEMBL
Match: A0A0A0KS64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180900 PE=4 SV=1)

HSP 1 Score: 741.9 bits (1914), Expect = 4.1e-211
Identity = 360/394 (91.37%), Postives = 379/394 (96.19%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFES 60
           MGPIRGFKRKK  K +KKV Q VFA+ASLS Q QPLDWWDEFSQRITGPLSQSKNTKFES
Sbjct: 1   MGPIRGFKRKK--KVEKKVDQNVFASASLSSQLQPLDWWDEFSQRITGPLSQSKNTKFES 60

Query: 61  VFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120
           VFKISRKTFSYICSLVKE MMAKTS+FTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS
Sbjct: 61  VFKISRKTFSYICSLVKEVMMAKTSSFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120

Query: 121 FGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETTH 180
           FG+NQSSVSQITWRFVEAMEEKG+ HLSWPSTEEDMD+IKSKF+KIRGLPNCCGV+ETTH
Sbjct: 121 FGLNQSSVSQITWRFVEAMEEKGLHHLSWPSTEEDMDKIKSKFKKIRGLPNCCGVVETTH 180

Query: 181 IMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFK 240
           IMMTLPT+ESANG+WLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVL+SSGFFK
Sbjct: 181 IMMTLPTSESANGIWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLQSSGFFK 240

Query: 241 RSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFST 300
            SQDGERLNGKKMKLSE+SELGEYIIGDSGFPLLPWLLTPYQGKGL DYQ EFNKRHF+T
Sbjct: 241 LSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLPDYQAEFNKRHFAT 300

Query: 301 RLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHH 360
           RLVAQRALTRLKEMWKIIKG+MWKPDKH+LPRIILVCCLLHNI+IDMEDE+QDEMPLSHH
Sbjct: 301 RLVAQRALTRLKEMWKIIKGVMWKPDKHRLPRIILVCCLLHNIVIDMEDEVQDEMPLSHH 360

Query: 361 HDPSYRQQSCKFVDNTGSITREKLSMYLSEKLTP 395
           HDPSYRQQSC+FVDNT SI+REKLSMYLS KL P
Sbjct: 361 HDPSYRQQSCEFVDNTASISREKLSMYLSGKLPP 392

[Close]

BLAST of Cp4.1LG01g10530 vs. TrEMBL
Match: A0A061FMZ6_THECC (RNA binding protein, putative OS=Theobroma cacao GN=TCM_042838 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 1.5e-168
Identity = 288/401 (71.82%), Postives = 342/401 (85.29%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQY------VFAAASLSFQPQPLDWWDEFSQRITGPLSQSK 60
           MGPIRGFKR+K K A KKVV           A+SL  QPQPLDWWDEFS+RI+G LSQSK
Sbjct: 1   MGPIRGFKRRK-KAADKKVVDQNVLPSSAAVASSLGSQPQPLDWWDEFSKRISGTLSQSK 60

Query: 61  NTK-FESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGES 120
           ++K FESVF+ISRKTF YICSLVKE MMA+ S+FTDLNGKPLSLNDQVAVALRRL SGES
Sbjct: 61  DSKSFESVFRISRKTFDYICSLVKEDMMARQSSFTDLNGKPLSLNDQVAVALRRLSSGES 120

Query: 121 LSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCC 180
           LS IGD+FGMNQS+VSQITWRFVEAMEE+G+ HLSWPSTE +M+QIKSKF+KIRGLPNCC
Sbjct: 121 LSIIGDTFGMNQSTVSQITWRFVEAMEERGLHHLSWPSTEAEMEQIKSKFEKIRGLPNCC 180

Query: 181 GVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVL 240
           G I+ TH++MTLPT + +N VW DREKN SMILQ +VDPEMRF D+I GWPGSLSDA+VL
Sbjct: 181 GAIDITHVVMTLPTMDPSNNVWFDREKNYSMILQAVVDPEMRFRDVIAGWPGSLSDAIVL 240

Query: 241 ESSGFFKRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEF 300
            SSGFF+ S++G+RLNGKK+ +SE +++ EYIIGD+GFPLLPWL TPYQGKGL+D Q EF
Sbjct: 241 RSSGFFRLSEEGKRLNGKKLNISEGTDIREYIIGDAGFPLLPWLFTPYQGKGLSDLQVEF 300

Query: 301 NKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQD 360
           NKRH +TR+VAQ AL RLKEMW+II G+MW PDK++LPRI+LVCCLLHNI+ID+EDE+ D
Sbjct: 301 NKRHAATRMVAQMALARLKEMWRIIHGVMWMPDKNRLPRIVLVCCLLHNILIDLEDEVLD 360

Query: 361 EMPLSHHHDPSYRQQSCKFVDNTGSITREKLSMYLSEKLTP 395
           +M LSHHHD  YR+Q+C+ +D +  I R+KLS+YL+ KL P
Sbjct: 361 DMSLSHHHDTGYRRQNCESLDKSALIMRDKLSLYLTGKLPP 400

[Close]

BLAST of Cp4.1LG01g10530 vs. TrEMBL
Match: A0A0B0NEP8_GOSAR (Putative nuclease HARBI1 OS=Gossypium arboreum GN=F383_15215 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 1.2e-165
Identity = 279/395 (70.63%), Postives = 340/395 (86.08%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTK-FE 60
           MGPI+GFKR+K K A KKVV +    +SL  QPQPLDWWDEFS RI+GPLSQSK ++ FE
Sbjct: 1   MGPIKGFKRRK-KTADKKVVDHNVLPSSLGSQPQPLDWWDEFSNRISGPLSQSKGSQSFE 60

Query: 61  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 120
           SVF+ISRKTF+YICSLVK+ +MA+ S++TD+ GKPLSLNDQVAVALRRL SGESLS IGD
Sbjct: 61  SVFRISRKTFNYICSLVKDDLMARQSSYTDIYGKPLSLNDQVAVALRRLSSGESLSIIGD 120

Query: 121 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETT 180
           +FGMNQS+VSQITWRFVE+MEE+G+ HLSWPSTEE+M+QIKSKF+KIRGLPNCCG I+ T
Sbjct: 121 TFGMNQSTVSQITWRFVESMEERGLHHLSWPSTEEEMEQIKSKFEKIRGLPNCCGAIDIT 180

Query: 181 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 240
           HI+MTLPT + +N VW DREKN SM+LQ +VDPEMRF D+I GWPGSLSDA+VL+SSG F
Sbjct: 181 HIVMTLPTMDPSNHVWFDREKNYSMVLQAVVDPEMRFRDVIVGWPGSLSDAVVLQSSGLF 240

Query: 241 KRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFS 300
           + S++G+RLNGKK+ +SE +E+ EYIIGD+GFPLLPWL TPYQGK L+D Q EFNKRH +
Sbjct: 241 RLSEEGKRLNGKKLNISEGTEIREYIIGDAGFPLLPWLFTPYQGKSLSDLQIEFNKRHAA 300

Query: 301 TRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSH 360
           TR+VA+ AL RLKEMW+II G+MW PD+++LPRIILVCCLLHNI+ID+EDE+ D+M LSH
Sbjct: 301 TRMVAEMALARLKEMWRIIHGVMWMPDRNRLPRIILVCCLLHNILIDLEDEVLDDMSLSH 360

Query: 361 HHDPSYRQQSCKFVDNTGSITREKLSMYLSEKLTP 395
            HD  Y +Q+C+  D + SITR+KLS+YL+ KL P
Sbjct: 361 QHDIDYHRQNCESFDQSASITRDKLSLYLTGKLPP 394

[Close]

BLAST of Cp4.1LG01g10530 vs. TrEMBL
Match: A0A067FX22_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015432mg PE=4 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 4.4e-157
Identity = 275/409 (67.24%), Postives = 327/409 (79.95%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQYVFAAA--------------SLSFQPQPLDWWDEFSQRI 60
           MGPIRG KR+K  KA+KKV Q V AAA              SL  QPQPLDWWD FS+RI
Sbjct: 1   MGPIRGLKRRK--KAEKKVDQNVLAAAAASDGDGDGDADADSLVAQPQPLDWWDNFSRRI 60

Query: 61  TGPLSQSKNTK-FESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVAL 120
           +GPL  SK +K FESVFKISRKTF YICSLVKE + A+ SNF+  NGKPLS ND VA+AL
Sbjct: 61  SGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIAL 120

Query: 121 RRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQK 180
           RRL SGESL  IGD FG+NQS+VSQ+TWRFVE+MEE+G+ HL WPS E +M+ IKSKF+K
Sbjct: 121 RRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEK 180

Query: 181 IRGLPNCCGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPG 240
           IRG  NCCG I+ THI+M +P  + AN VW DREKN SMILQ IVDPEMRF DII GWPG
Sbjct: 181 IRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPG 240

Query: 241 SLSDALVLESSGFFKRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKG 300
           SL+DALVL +SGFFK +++G+RL+GK ++LSE  EL EYIIGD+GFPLLPWLLTPYQGKG
Sbjct: 241 SLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKG 300

Query: 301 LADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMI 360
           L+D + E+NKRH +TR+VAQ AL RLK++W+II G+MW PDK++LPRI+LVCCLLHNI+I
Sbjct: 301 LSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVI 360

Query: 361 DMEDEMQDEMPLSHHHDPSYRQQSCKFVDNTGSITREKLSMYLSEKLTP 395
           DMEDEM DE+PLS+HHD  Y QQ+C+ VD T S+ R+ LS+YLS KL P
Sbjct: 361 DMEDEMLDELPLSYHHDSGYHQQTCESVDKTASVMRDNLSLYLSGKLPP 407

[Close]

BLAST of Cp4.1LG01g10530 vs. TrEMBL
Match: A0A067K0W6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18441 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 7.5e-157
Identity = 270/398 (67.84%), Postives = 330/398 (82.91%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQYVFAAASLSFQPQ---PLDWWDEFSQRITGPLSQSKNT- 60
           MGPIRGFKR+K  KA+KKV Q V AAA  S  PQ   PLDWWD+FS+RITGPLS+S+N+ 
Sbjct: 1   MGPIRGFKRRK--KAEKKVDQNVLAAALSSLHPQSQQPLDWWDDFSKRITGPLSESRNSM 60

Query: 61  KFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSN 120
           KFESVFKISRKTF+YICSLV + + A+ SNF+  NGKPLSLNDQVA+ALRRL SGESLSN
Sbjct: 61  KFESVFKISRKTFNYICSLVNDVLTARQSNFSSTNGKPLSLNDQVAIALRRLSSGESLSN 120

Query: 121 IGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVI 180
           IGD+FG+NQS+VS +TWRFVEAMEE+G+ HL WPS++ +M+++KSKF+K+ GLPNCCGVI
Sbjct: 121 IGDAFGINQSTVSHLTWRFVEAMEERGLDHLRWPSSQTEMEEVKSKFEKLHGLPNCCGVI 180

Query: 181 ETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESS 240
           +TTHI+MTL   + +N VW+DREKN SM+LQ IVDP+MR  D+I G+PGSLSDALVL++S
Sbjct: 181 DTTHIVMTLSAVDHSNDVWIDREKNHSMVLQAIVDPDMRIRDVIVGYPGSLSDALVLQNS 240

Query: 241 GFFKRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKR 300
            F+K S++G+RLNGKK+KL E +ELGEYIIGD+GFPLLPWLLTP+Q   L  +Q EFNK 
Sbjct: 241 SFYKLSEEGKRLNGKKIKLMEGAELGEYIIGDAGFPLLPWLLTPFQ-HALPGHQAEFNKL 300

Query: 301 HFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMP 360
           H + R+VAQ AL RLKEMW+I+ G+MW PDK+KLPRII VCCLLHNI+IDMED+  +EMP
Sbjct: 301 HSAARVVAQIALARLKEMWRIMHGVMWLPDKNKLPRIIFVCCLLHNIVIDMEDKALEEMP 360

Query: 361 LSHHHDPSYRQQSCKFVDNTGSITREKLSMYLSEKLTP 395
           +SHHHD  YRQQ C+    TG+  REK S Y+S KL P
Sbjct: 361 MSHHHDKDYRQQICESASKTGTDMREKFSYYISNKLPP 395

[Close]

BLAST of Cp4.1LG01g10530 vs. TAIR10
Match: AT3G55350.1 (AT3G55350.1 PIF / Ping-Pong family of plant transposases)

HSP 1 Score: 490.3 bits (1261), Expect = 1.1e-138
Identity = 247/409 (60.39%), Postives = 301/409 (73.59%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQYVFAAASLSF------------------QPQPLDWWDEF 60
           MGPI+  K+KK  +A+KKV + V  AA+ +                     Q LDWWD F
Sbjct: 1   MGPIKTIKKKK--RAEKKVDRNVLLAATAAATSASAAAALNNNDDDDDSSSQSLDWWDGF 60

Query: 61  SQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVA 120
           S+RI G  +  K   FESVFKISRKTF YICSLVK    AK +NF+D NG PLSLND+VA
Sbjct: 61  SRRIYGGSTDPKT--FESVFKISRKTFDYICSLVKADFTAKPANFSDSNGNPLSLNDRVA 120

Query: 121 VALRRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSK 180
           VALRRL SGESLS IG++FGMNQS+VSQITWRFVE+MEE+ I HLSWPS    +D+IKSK
Sbjct: 121 VALRRLGSGESLSVIGETFGMNQSTVSQITWRFVESMEERAIHHLSWPSK---LDEIKSK 180

Query: 181 FQKIRGLPNCCGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITG 240
           F+KI GLPNCCG I+ THI+M LP  E +N VWLD EKN SM LQ +VDP+MRF D+I G
Sbjct: 181 FEKISGLPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAG 240

Query: 241 WPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQ 300
           WPGSL+D +VL++SGF+K  + G+RLNG+K+ LSE +EL EYI+GDSGFPLLPWLLTPYQ
Sbjct: 241 WPGSLNDDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDSGFPLLPWLLTPYQ 300

Query: 301 GKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHN 360
           GK  +  QTEFNKRH      AQ AL++LK+ W+II G+MW PD+++LPRII VCCLLHN
Sbjct: 301 GKPTSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWMPDRNRLPRIIFVCCLLHN 360

Query: 361 IMIDMEDEMQDEMPLSHHHDPSYRQQSCKFVDNTGSITREKLSMYLSEK 392
           I+IDMED+  D+ PLS  HD +YRQ+SCK  D   S+ R++LS  L  K
Sbjct: 361 IIIDMEDQTLDDQPLSQQHDMNYRQRSCKLADEASSVLRDELSDQLCGK 402

[Close]

BLAST of Cp4.1LG01g10530 vs. TAIR10
Match: AT3G63270.1 (AT3G63270.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 354.0 bits (907), Expect = 1.2e-97
Identity = 174/396 (43.94%), Postives = 261/396 (65.91%), Query Frame = 1


Query: 1   MGPIRGFKRKKQK------KAQKKVVQYVFAAASLSFQPQPLDWWDEFSQRITGP-LSQS 60
           M P++  K+ K+K      K  K   +    A  L  +    DWWD F  R + P +   
Sbjct: 1   MAPVKQKKKNKKKPLDKAKKLAKNKEKKRVNAVPLDPEAIDCDWWDTFWLRNSSPSVPSD 60

Query: 61  KNTKFESVFKISRKTFSYICSLVKEAMMAKT-SNFTDLNGKPLSLNDQVAVALRRLCSGE 120
           ++  F+  F+ S+ TFSYICSLV+E ++++  S   ++ G+ LS+  QVA+ALRRL SG+
Sbjct: 61  EDYAFKHFFRASKTTFSYICSLVREDLISRPPSGLINIEGRLLSVEKQVAIALRRLASGD 120

Query: 121 SLSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNC 180
           S  ++G +FG+ QS+VSQ+TWRF+EA+EE+   HL WP ++  +++IKSKF+++ GLPNC
Sbjct: 121 SQVSVGAAFGVGQSTVSQVTWRFIEALEERAKHHLRWPDSDR-IEEIKSKFEEMYGLPNC 180

Query: 181 CGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALV 240
           CG I+TTHI+MTLP  ++++  W D+EKN SM LQ + D EMRF +++TGWPG ++ + +
Sbjct: 181 CGAIDTTHIIMTLPAVQASDD-WCDQEKNYSMFLQGVFDHEMRFLNMVTGWPGGMTVSKL 240

Query: 241 LESSGFFKRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTE 300
           L+ SGFFK  ++ + L+G    LS+ +++ EY++G   +PLLPWL+TP+     +D    
Sbjct: 241 LKFSGFFKLCENAQILDGNPKTLSQGAQIREYVVGGISYPLLPWLITPHDSDHPSDSMVA 300

Query: 301 FNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQ 360
           FN+RH   R VA  A  +LK  W+I+  +MW+PD+ KLP IILVCCLLHNI+ID  D +Q
Sbjct: 301 FNERHEKVRSVAATAFQQLKGSWRILSKVMWRPDRRKLPSIILVCCLLHNIIIDCGDYLQ 360

Query: 361 DEMPLSHHHDPSYRQQSCKFVDNTGSITREKLSMYL 389
           +++PLS HHD  Y  + CK  +  GS  R  L+ +L
Sbjct: 361 EDVPLSGHHDSGYADRYCKQTEPLGSELRGCLTEHL 394

[Close]

BLAST of Cp4.1LG01g10530 vs. TAIR10
Match: AT5G12010.1 (AT5G12010.1 unknown protein)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-36
Identity = 93/324 (28.70%), Postives = 164/324 (50.62%), Query Frame = 1


Query: 38  WWDEFSQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSL 97
           WW+E S R+  P        F+  F++S+ TF  IC  +  A+  + +   +     + +
Sbjct: 161 WWEECS-RLDYP-----EEDFKKAFRMSKSTFELICDELNSAVAKEDTALRNA----IPV 220

Query: 98  NDQVAVALRRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGI-RHLSWPSTEEDM 157
             +VAV + RL +GE L  +   FG+  S+  ++     +A+++  + ++L WP  +E +
Sbjct: 221 RQRVAVCIWRLATGEPLRLVSKKFGLGISTCHKLVLEVCKAIKDVLMPKYLQWPD-DESL 280

Query: 158 DQIKSKFQKIRGLPNCCGVIETTHIMMTLPTTESAN-----GVWLDREKNCSMILQVIVD 217
             I+ +F+ + G+PN  G + TTHI +  P    A+         +++ + S+ +Q +V+
Sbjct: 281 RNIRERFESVSGIPNVVGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITIQAVVN 340

Query: 218 PEMRFCDIITGWPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSENSELGEYIIGDSGF 277
           P+  F D+  GWPGS+ D  VLE S  ++R+ +G  L G             ++ G  G 
Sbjct: 341 PKGVFTDLCIGWPGSMPDDKVLEKSLLYQRANNGGLLKGM------------WVAGGPGH 400

Query: 278 PLLPWLLTPYQGKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLP 337
           PLL W+L PY  + L   Q  FN++    + VA+ A  RLK  W  ++    +     LP
Sbjct: 401 PLLDWVLVPYTQQNLTWTQHAFNEKMSEVQGVAKEAFGRLKGRWACLQK-RTEVKLQDLP 460

Query: 338 RIILVCCLLHNIMIDMEDEMQDEM 356
            ++  CC+LHNI    E++M+ E+
Sbjct: 461 TVLGACCVLHNICEMREEKMEPEL 460

[Close]

BLAST of Cp4.1LG01g10530 vs. TAIR10
Match: AT4G29780.1 (AT4G29780.1 unknown protein)

HSP 1 Score: 129.4 bits (324), Expect = 4.8e-30
Identity = 89/325 (27.38%), Postives = 152/325 (46.77%), Query Frame = 1


Query: 37  DWWDEFSQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLS 96
           DWWD  S+            +F   F++S+ TF+ IC  +   +  K +   D    P  
Sbjct: 198 DWWDRVSR------PDFPEDEFRREFRMSKSTFNLICEELDTTVTKKNTMLRDAIPAP-- 257

Query: 97  LNDQVAVALRRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGI-RHLSWPSTEED 156
              +V V + RL +G  L ++ + FG+  S+  ++      A+ +  + ++L WPS  E 
Sbjct: 258 --KRVGVCVWRLATGAPLRHVSERFGLGISTCHKLVIEVCRAIYDVLMPKYLLWPSDSE- 317

Query: 157 MDQIKSKFQKIRGLPNCCGVIETTHIMMTLPTTESA-----NGVWLDREKNCSMILQVIV 216
           ++  K+KF+ +  +PN  G I TTHI +  P    A          +++ + S+ +Q +V
Sbjct: 318 INSTKAKFESVHKIPNVVGSIYTTHIPIIAPKVHVAAYFNKRHTERNQKTSYSITVQGVV 377

Query: 217 DPEMRFCDIITGWPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSENSELGEYIIGDSG 276
           + +  F D+  G PGSL+D  +LE S               + + +       +I+G+SG
Sbjct: 378 NADGIFTDVCIGNPGSLTDDQILEKSSL------------SRQRAARGMLRDSWIVGNSG 437

Query: 277 FPLLPWLLTPYQGKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKL 336
           FPL  +LL PY  + L   Q  FN+     + +A  A  RLK  W  ++    +     L
Sbjct: 438 FPLTDYLLVPYTRQNLTWTQHAFNESIGEIQGIATAAFERLKGRWACLQK-RTEVKLQDL 497

Query: 337 PRIILVCCLLHNIMIDMEDEMQDEM 356
           P ++  CC+LHNI    ++EM  E+
Sbjct: 498 PYVLGACCVLHNICEMRKEEMLPEL 498

[Close]

BLAST of Cp4.1LG01g10530 vs. TAIR10
Match: AT1G72270.1 (AT1G72270.1 Ribosome 60S biogenesis N-terminal (InterPro:IPR021714))

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-19
Identity = 77/312 (24.68%), Postives = 134/312 (42.95%), Query Frame = 1


Query: 42  FSQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQV 101
           F++ +T       + ++   F++S+ TF  + S++  + +                    
Sbjct: 81  FNRFLTSATEDEDDPRWCLYFRMSKSTFFSLYSILSHSSLPS-----------------F 140

Query: 102 AVALRRLCSGESLSNIGDSFGMNQSS-VSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIK 161
           A  + RL  G S   +   FG + +S  S+  +   + + EK           + +D  K
Sbjct: 141 AATIFRLAHGASYECLVHRFGFDSTSQASRSFFTVCKLINEK---------LSQQLDDPK 200

Query: 162 SKFQKIRGLPNCCGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDII 221
             F     LPNC GV+                G  L  +   S+++Q +VD   RF DI 
Sbjct: 201 PDFSP-NLLPNCYGVVGFGRF--------EVKGKLLGAKG--SILVQALVDSNGRFVDIS 260

Query: 222 TGWPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTP 281
            GWP ++    +   +  F  ++  E L+G   KL     +  YI+GDS  PLLPWL+TP
Sbjct: 261 AGWPSTMKPEAIFRQTKLFSIAE--EVLSGAPTKLGNGVLVPRYILGDSCLPLLPWLVTP 320

Query: 282 YQ-GKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHK-LPRIILVCC 341
           Y        ++ EFN    +     + A  +++  W+I+    WKP+  + +P +I   C
Sbjct: 321 YDLTSDEESFREEFNNVVHTGLHSVEIAFAKVRARWRILDK-KWKPETIEFMPFVITTGC 352

Query: 342 LLHNIMIDMEDE 351
           LLHN +++  D+
Sbjct: 381 LLHNFLVNSGDD 352

[Close]

BLAST of Cp4.1LG01g10530 vs. NCBI nr
Match: gi|449459932|ref|XP_004147700.1| (PREDICTED: putative nuclease HARBI1 [Cucumis sativus])

HSP 1 Score: 741.9 bits (1914), Expect = 5.8e-211
Identity = 360/394 (91.37%), Postives = 379/394 (96.19%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFES 60
           MGPIRGFKRKK  K +KKV Q VFA+ASLS Q QPLDWWDEFSQRITGPLSQSKNTKFES
Sbjct: 1   MGPIRGFKRKK--KVEKKVDQNVFASASLSSQLQPLDWWDEFSQRITGPLSQSKNTKFES 60

Query: 61  VFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120
           VFKISRKTFSYICSLVKE MMAKTS+FTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS
Sbjct: 61  VFKISRKTFSYICSLVKEVMMAKTSSFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120

Query: 121 FGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETTH 180
           FG+NQSSVSQITWRFVEAMEEKG+ HLSWPSTEEDMD+IKSKF+KIRGLPNCCGV+ETTH
Sbjct: 121 FGLNQSSVSQITWRFVEAMEEKGLHHLSWPSTEEDMDKIKSKFKKIRGLPNCCGVVETTH 180

Query: 181 IMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFK 240
           IMMTLPT+ESANG+WLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVL+SSGFFK
Sbjct: 181 IMMTLPTSESANGIWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLQSSGFFK 240

Query: 241 RSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFST 300
            SQDGERLNGKKMKLSE+SELGEYIIGDSGFPLLPWLLTPYQGKGL DYQ EFNKRHF+T
Sbjct: 241 LSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLPDYQAEFNKRHFAT 300

Query: 301 RLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHH 360
           RLVAQRALTRLKEMWKIIKG+MWKPDKH+LPRIILVCCLLHNI+IDMEDE+QDEMPLSHH
Sbjct: 301 RLVAQRALTRLKEMWKIIKGVMWKPDKHRLPRIILVCCLLHNIVIDMEDEVQDEMPLSHH 360

Query: 361 HDPSYRQQSCKFVDNTGSITREKLSMYLSEKLTP 395
           HDPSYRQQSC+FVDNT SI+REKLSMYLS KL P
Sbjct: 361 HDPSYRQQSCEFVDNTASISREKLSMYLSGKLPP 392

[Close]

BLAST of Cp4.1LG01g10530 vs. NCBI nr
Match: gi|659123396|ref|XP_008461643.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 739.6 bits (1908), Expect = 2.9e-210
Identity = 359/394 (91.12%), Postives = 378/394 (95.94%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFES 60
           MGPIRGFKRKK  K +KKV Q VFA+ASLS Q QPLDWWDEFSQRITGPLSQSKNTKFES
Sbjct: 1   MGPIRGFKRKK--KVEKKVDQNVFASASLSSQLQPLDWWDEFSQRITGPLSQSKNTKFES 60

Query: 61  VFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120
           VFKISRKTFSYICSLVKE MMAKTS+FTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS
Sbjct: 61  VFKISRKTFSYICSLVKEVMMAKTSSFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120

Query: 121 FGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETTH 180
           FG+NQSSVSQITWRFVEAMEEKG+ HLSWPSTEEDMD+IKSKF+KIRGLPNCCGVIETTH
Sbjct: 121 FGLNQSSVSQITWRFVEAMEEKGLHHLSWPSTEEDMDKIKSKFKKIRGLPNCCGVIETTH 180

Query: 181 IMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFK 240
           IMMTLPT+ESANG+WLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSD+LVL+SSGFFK
Sbjct: 181 IMMTLPTSESANGIWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDSLVLQSSGFFK 240

Query: 241 RSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFST 300
            SQDGERLNGKKM+LSE+SELGEYIIGDSGFPLLPWLLTPYQGKGL DYQ EFNKRHF+T
Sbjct: 241 LSQDGERLNGKKMRLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLPDYQAEFNKRHFAT 300

Query: 301 RLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHH 360
           RLVAQRALTRLKEMWKIIKG+MWKPDKH+LPRIILVCCLLHNI+IDMEDE+QDEMPLSHH
Sbjct: 301 RLVAQRALTRLKEMWKIIKGVMWKPDKHRLPRIILVCCLLHNIVIDMEDEVQDEMPLSHH 360

Query: 361 HDPSYRQQSCKFVDNTGSITREKLSMYLSEKLTP 395
           HDPSYRQQSC+FVDNT SI REKLSMYLS KL P
Sbjct: 361 HDPSYRQQSCEFVDNTASIAREKLSMYLSGKLPP 392

[Close]

BLAST of Cp4.1LG01g10530 vs. NCBI nr
Match: gi|1009120469|ref|XP_015876938.1| (PREDICTED: putative nuclease HARBI1 [Ziziphus jujuba])

HSP 1 Score: 605.1 bits (1559), Expect = 8.5e-170
Identity = 293/392 (74.74%), Postives = 336/392 (85.71%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFES 60
           MGP+RG K  K+KK +KKV Q V AA SL  +P+PLDWWD FSQRITGPL QSK  KFES
Sbjct: 1   MGPVRGLK--KRKKVEKKVDQNVLAA-SLGPEPEPLDWWDGFSQRITGPLLQSKKMKFES 60

Query: 61  VFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120
           VFKISRKTFSYICSLVKE MMAK SNF DLNGKPLSLNDQVAVALRRL +GESLS+IGDS
Sbjct: 61  VFKISRKTFSYICSLVKEDMMAKASNFVDLNGKPLSLNDQVAVALRRLSAGESLSSIGDS 120

Query: 121 FGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETTH 180
           F MNQS+VSQ+TWRFVE+MEE+G+ HL WPSTE +M++IKSKF+KIRGLPNCCG I+TTH
Sbjct: 121 FKMNQSTVSQLTWRFVESMEERGLHHLHWPSTETEMEEIKSKFEKIRGLPNCCGAIDTTH 180

Query: 181 IMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFK 240
           IMMTLPT + ++ VWLD EKNCSMILQ IVDPEMRF ++ITGWPGSL+D +VL SSGFFK
Sbjct: 181 IMMTLPTMDPSSDVWLDHEKNCSMILQAIVDPEMRFRNVITGWPGSLNDDIVLRSSGFFK 240

Query: 241 RSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFST 300
              +G+ LNGKKM L E +ELGEYI+GD+GFPLLPWLLTPY+GK L D+Q E+NKR F+T
Sbjct: 241 LCGEGKMLNGKKMVLPEGTELGEYIVGDAGFPLLPWLLTPYRGKHLPDFQAEYNKRLFAT 300

Query: 301 RLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHH 360
           ++VAQRAL RLKEMWKII G+MWKPDKHKLPRIILVCC+LHNI+IDMEDEMQDE+PLSHH
Sbjct: 301 KMVAQRALARLKEMWKIIHGVMWKPDKHKLPRIILVCCILHNIVIDMEDEMQDELPLSHH 360

Query: 361 HDPSYRQQSCKFVDNTGSITREKLSMYLSEKL 393
           HD  Y Q + + VD +  I REKLS+ LS KL
Sbjct: 361 HDTGYHQLNSESVDKSALILREKLSLQLSGKL 389

[Close]

BLAST of Cp4.1LG01g10530 vs. NCBI nr
Match: gi|590563694|ref|XP_007009443.1| (RNA binding protein, putative [Theobroma cacao])

HSP 1 Score: 600.5 bits (1547), Expect = 2.1e-168
Identity = 288/401 (71.82%), Postives = 342/401 (85.29%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQY------VFAAASLSFQPQPLDWWDEFSQRITGPLSQSK 60
           MGPIRGFKR+K K A KKVV           A+SL  QPQPLDWWDEFS+RI+G LSQSK
Sbjct: 1   MGPIRGFKRRK-KAADKKVVDQNVLPSSAAVASSLGSQPQPLDWWDEFSKRISGTLSQSK 60

Query: 61  NTK-FESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGES 120
           ++K FESVF+ISRKTF YICSLVKE MMA+ S+FTDLNGKPLSLNDQVAVALRRL SGES
Sbjct: 61  DSKSFESVFRISRKTFDYICSLVKEDMMARQSSFTDLNGKPLSLNDQVAVALRRLSSGES 120

Query: 121 LSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCC 180
           LS IGD+FGMNQS+VSQITWRFVEAMEE+G+ HLSWPSTE +M+QIKSKF+KIRGLPNCC
Sbjct: 121 LSIIGDTFGMNQSTVSQITWRFVEAMEERGLHHLSWPSTEAEMEQIKSKFEKIRGLPNCC 180

Query: 181 GVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVL 240
           G I+ TH++MTLPT + +N VW DREKN SMILQ +VDPEMRF D+I GWPGSLSDA+VL
Sbjct: 181 GAIDITHVVMTLPTMDPSNNVWFDREKNYSMILQAVVDPEMRFRDVIAGWPGSLSDAIVL 240

Query: 241 ESSGFFKRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEF 300
            SSGFF+ S++G+RLNGKK+ +SE +++ EYIIGD+GFPLLPWL TPYQGKGL+D Q EF
Sbjct: 241 RSSGFFRLSEEGKRLNGKKLNISEGTDIREYIIGDAGFPLLPWLFTPYQGKGLSDLQVEF 300

Query: 301 NKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQD 360
           NKRH +TR+VAQ AL RLKEMW+II G+MW PDK++LPRI+LVCCLLHNI+ID+EDE+ D
Sbjct: 301 NKRHAATRMVAQMALARLKEMWRIIHGVMWMPDKNRLPRIVLVCCLLHNILIDLEDEVLD 360

Query: 361 EMPLSHHHDPSYRQQSCKFVDNTGSITREKLSMYLSEKLTP 395
           +M LSHHHD  YR+Q+C+ +D +  I R+KLS+YL+ KL P
Sbjct: 361 DMSLSHHHDTGYRRQNCESLDKSALIMRDKLSLYLTGKLPP 400

[Close]

BLAST of Cp4.1LG01g10530 vs. NCBI nr
Match: gi|823255971|ref|XP_012460644.1| (PREDICTED: putative nuclease HARBI1 isoform X1 [Gossypium raimondii])

HSP 1 Score: 595.5 bits (1534), Expect = 6.7e-167
Identity = 280/393 (71.25%), Postives = 340/393 (86.51%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVVQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTK-FE 60
           MGPIRGFKR+K K A KKVV +   ++SL  Q QPLDWWD+FS+RI+GPLSQSK ++ FE
Sbjct: 1   MGPIRGFKRRK-KTADKKVVDHNVFSSSLESQLQPLDWWDDFSKRISGPLSQSKGSRSFE 60

Query: 61  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 120
           S+F+IS+KTF+YICSLVKE MMA+ S++TD+NGKPLSLNDQVAVALRRL SGESLS IGD
Sbjct: 61  SIFRISKKTFNYICSLVKEDMMARQSSYTDINGKPLSLNDQVAVALRRLSSGESLSVIGD 120

Query: 121 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFQKIRGLPNCCGVIETT 180
           +FGMNQS+VSQITWRFVEAMEEKG+ HL+WP TE +M+QIKSKF+KIRGLPNCCG I+ T
Sbjct: 121 TFGMNQSTVSQITWRFVEAMEEKGLHHLTWPLTEAEMEQIKSKFEKIRGLPNCCGAIDIT 180

Query: 181 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 240
           H++MTLPT + +N VW DREKN SMILQ +VDPEMR  D+I GWPGSLSDA+VL SSGFF
Sbjct: 181 HVVMTLPTMDPSNNVWFDREKNYSMILQAVVDPEMRLRDVIAGWPGSLSDAVVLRSSGFF 240

Query: 241 KRSQDGERLNGKKMKLSENSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFS 300
           + S++G+RL GKK+ +SE  E+GEYIIGD+GFPLLPWLLTPYQGKGL+D Q EFNKRH +
Sbjct: 241 RLSEEGKRLTGKKLNISEGMEIGEYIIGDAGFPLLPWLLTPYQGKGLSDLQIEFNKRHAA 300

Query: 301 TRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSH 360
           TR+VAQ AL RLKEMW+II G+MW PDK++LPRI+LVCCLLHNI+IDMEDE+ D+M LSH
Sbjct: 301 TRMVAQMALARLKEMWRIIHGVMWMPDKNRLPRIVLVCCLLHNILIDMEDEVFDDMSLSH 360

Query: 361 HHDPSYRQQSCKFVDNTGSITREKLSMYLSEKL 393
           HHD  YR+Q+C++ D +  I R+KLS+Y++ KL
Sbjct: 361 HHDTGYRRQNCEYFDQSAMIMRDKLSLYITGKL 392

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g10530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HARB1_DANRE	1.6e-27	26.80	Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1	[more]
HARB1_MOUSE	1.3e-24	26.71	Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1	[more]
HARB1_RAT	1.3e-24	26.03	Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g10530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS64_CUCSA	4.1e-211	91.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180900 PE=4 SV=1	[more]
A0A061FMZ6_THECC	1.5e-168	71.82	RNA binding protein, putative OS=Theobroma cacao GN=TCM_042838 PE=4 SV=1	[more]
A0A0B0NEP8_GOSAR	1.2e-165	70.63	Putative nuclease HARBI1 OS=Gossypium arboreum GN=F383_15215 PE=4 SV=1	[more]
A0A067FX22_CITSI	4.4e-157	67.24	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015432mg PE=4 SV=1	[more]
A0A067K0W6_JATCU	7.5e-157	67.84	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18441 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g10530 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55350.1	1.1e-138	60.39	PIF / Ping-Pong family of plant transposases	[more]
AT3G63270.1	1.2e-97	43.94	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]
AT5G12010.1	4.5e-36	28.70	unknown protein	[more]
AT4G29780.1	4.8e-30	27.38	unknown protein	[more]
AT1G72270.1	1.0e-19	24.68	Ribosome 60S biogenesis N-terminal (InterPro:IPR021714)	[more]

BLAST of Cp4.1LG01g10530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459932\|ref\|XP_004147700.1\|	5.8e-211	91.37	PREDICTED: putative nuclease HARBI1 [Cucumis sativus]	[more]
gi\|659123396\|ref\|XP_008461643.1\|	2.9e-210	91.12	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
gi\|1009120469\|ref\|XP_015876938.1\|	8.5e-170	74.74	PREDICTED: putative nuclease HARBI1 [Ziziphus jujuba]	[more]
gi\|590563694\|ref\|XP_007009443.1\|	2.1e-168	71.82	RNA binding protein, putative [Theobroma cacao]	[more]
gi\|823255971\|ref\|XP_012460644.1\|	6.7e-167	71.25	PREDICTED: putative nuclease HARBI1 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027806	HARBI1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g10530.1	Cp4.1LG01g10530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 176..342 score: 1.5
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 13..390 score: 1.2E
None	No IPR available	PANTHER	PTHR22930:SF45	SUBFAMILY NOT NAMED	coord: 13..390 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g10530	CmaCh04G012040	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g10530	CmaCh04G002290	Cucurbita maxima (Rimu)	cmacpeB722
Cp4.1LG01g10530	CmoCh04G002330	Cucurbita moschata (Rifu)	cmocpeB674
Cp4.1LG01g10530	CmoCh04G012760	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g10530	Cla004027	Watermelon (97103) v1	cpewmB404
Cp4.1LG01g10530	Csa5G180900	Cucumber (Chinese Long) v2	cpecuB437
Cp4.1LG01g10530	ClCG07G003160	Watermelon (Charleston Gray)	cpewcgB409
Cp4.1LG01g10530	CSPI05G09500	Wild cucumber (PI 183967)	cpecpiB437
Cp4.1LG01g10530	Lsi04G008700	Bottle gourd (USVL1VR-Ls)	cpelsiB358
Cp4.1LG01g10530	MELO3C034253.2	Melon (DHL92) v3.6.1	cpemedB436
Cp4.1LG01g10530	CsaV3_5G006910	Cucumber (Chinese Long) v3	cpecucB0541
Cp4.1LG01g10530	Bhi07G000794	Wax gourd	cpewgoB0556
Cp4.1LG01g10530	CsGy5G006820	Cucumber (Gy14) v2	cgybcpeB646
Cp4.1LG01g10530	Carg00282	Silver-seed gourd	carcpeB0938
Cp4.1LG01g10530	Carg23794	Silver-seed gourd	carcpeB1208
Cp4.1LG01g10530	Carg12340	Silver-seed gourd	carcpeB0619

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g10530	Cp4.1LG01g04540	Cucurbita pepo (Zucchini)	cpecpeB374

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g10530	Cucumber (Gy14) v2	cgybcpeB363
Cp4.1LG01g10530	Cucumber (Gy14) v2	cgybcpeB517
Cp4.1LG01g10530	Cucumber (Gy14) v2	cgybcpeB662
Cp4.1LG01g10530	Cucumber (Gy14) v2	cgybcpeB809
Cp4.1LG01g10530	Melon (DHL92) v3.6.1	cpemedB417
Cp4.1LG01g10530	Melon (DHL92) v3.6.1	cpemedB475
Cp4.1LG01g10530	Melon (DHL92) v3.6.1	cpemedB508
Cp4.1LG01g10530	Silver-seed gourd	carcpeB0372
Cp4.1LG01g10530	Silver-seed gourd	carcpeB0964
Cp4.1LG01g10530	Cucumber (Chinese Long) v3	cpecucB0486
Cp4.1LG01g10530	Cucumber (Chinese Long) v3	cpecucB0510
Cp4.1LG01g10530	Cucumber (Chinese Long) v3	cpecucB0551
Cp4.1LG01g10530	Cucumber (Chinese Long) v3	cpecucB0578
Cp4.1LG01g10530	Wax gourd	cpewgoB0488
Cp4.1LG01g10530	Wax gourd	cpewgoB0542
Cp4.1LG01g10530	Wax gourd	cpewgoB0545
Cp4.1LG01g10530	Cucurbita pepo (Zucchini)	cpecpeB071
Cp4.1LG01g10530	Cucurbita pepo (Zucchini)	cpecpeB212
Cp4.1LG01g10530	Cucurbita pepo (Zucchini)	cpecpeB289
Cp4.1LG01g10530	Cucurbita pepo (Zucchini)	cpecpeB383
Cp4.1LG01g10530	Cucurbita pepo (Zucchini)	cpecpeB388
Cp4.1LG01g10530	Cucurbita pepo (Zucchini)	cpecpeB402
Cp4.1LG01g10530	Cucumber (Gy14) v1	cgycpeB0458
Cp4.1LG01g10530	Cucurbita maxima (Rimu)	cmacpeB314
Cp4.1LG01g10530	Cucurbita moschata (Rifu)	cmocpeB277
Cp4.1LG01g10530	Wild cucumber (PI 183967)	cpecpiB450
Cp4.1LG01g10530	Cucumber (Chinese Long) v2	cpecuB451
Cp4.1LG01g10530	Bottle gourd (USVL1VR-Ls)	cpelsiB333
Cp4.1LG01g10530	Watermelon (Charleston Gray)	cpewcgB343
Cp4.1LG01g10530	Watermelon (97103) v1	cpewmB380
Cp4.1LG01g10530	Melon (DHL92) v3.5.1	cpemeB356
Cp4.1LG01g10530	Melon (DHL92) v3.5.1	cpemeB376
Cp4.1LG01g10530	Melon (DHL92) v3.5.1	cpemeB407