CmaCh04G012040 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G012040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Putative nuclease HARBI1
Location	Cma_Chr04 : 6131017 .. 6134480 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTTTTGCCTCATCTTTGCTTCTTTTTCGAGTTTCGAATGGGACCCATTAGAGGGTTCAAGAGGAAGAAGCAGAAGAAGGCACAGAAAAAGGTTCAGCAATACGTCTTCGCTGCTGCTTCACTGTCGTTTCAGCCACAGCCCTTGGATTGGTGGGATGAGTTCTCACAGAGGATTACTGGTAAACCATTTTTCGCTTCTCTTCTACTGGAATTTGTGCATTGTTATTGCTCTTAGTTGCTTTCTGTTTATTGAGTCTCTCCATTGAATTCTTTTGGTGTTTGGTGAGCTTTTTGGACGGTGGTGGAATGTAGTGTTTTATAATCATATATCTTTGATGCCTGCAATTATAGACCCGTGATATGTTCCTAATAACATTGAGAGGGTTAGAAGGGGCAGCCTGTTGAAGTGATCCTATGGGCATGGAGATGGATCAAATCTGTTTAGCAGCAGATTTTAGCTTAGATATGTTAGTTCACTTGATAATTGATGTGTACAAGTTGTGGCTACTCACTTAGCTGGTTTATAGAGTGTGTAACTGTGTTGTGTTCTGATGTTCTTCTTTTTCTCATTGAATTGTTGAAATATTAATTATTTCTTAGCTGCTCCTACTTTTTGGTACTTTTTTGAGCCCAATCTCACCACTGGTAGATATTGTCCTCTTTAGACATTTCCTTTTGGGGTTCCCCTCAAAGTTTTTAAAACGTGTCTGCTAGGGTGTCTACACCCTTATAAAGAATACTTTAAACCCCTCTCCAACCGATATGGGATCTCACAATCCACCCCCTTCAGGGTCCAACGTCCTTGCTGACACTTGTTCCCCTCTCCCACCCCCTTTAGGGCCCAGTGTTCTCGCTGGCACTCGGTCCCCTCTCCAATCAATGTGAGATCTCACATTTTGTCTCAGCATTGTTGACAATAAACATCTTTAGAGAACCGAGTCCAATGTGATCCAAAACTCTCGTACTCTTCTTTGTTGATTCGTATTAAAGATATCACTCTGAATATTGTACATCGAAGTTAGAATCCTGTCATCTGTTGACATTTGTAAGAAGGCAGTGTCTGAGAAATGGAAGAATGACTATGAAAGTAATAAAGTACATAATACAGAGAAGAAGGGCGGGGGATGAACAGTATTCAACTTCAAGTACGTGTTTTTTATGGTCTGCTGTTGTTTATGCATAGAAATGGAAGGATGACTATAAATATCTTGATCTGGTTGTTTTAGAGGCATCTTGGAAACGGGTATGTTTAAGTTTCGATTCGAGTCAATGTAGTAATGCTACGATGCATAAAAGTTCATAGAAAATGGATCTCTTCTAGGTGTTAAGATTTGTTTCAACCTACTGATATGGCTAAGTGCTCAATATTTGATTTTGGTATTCCAGAGGACCTAACAACATGATCAAAGTGGATAGGTTTTGTTGGATATCAGTTCTATTTTCATATTCCATGGTTCTGAAATGTTGGGTACACATTTAGCAGTTTCTTTGTTCTGGCCATGATCATATATGATGCAACAAGTAAATATTTACTTTTGGCTTAAAATTAAAGGATTCGACTAAATGTGTGGATGAATGTGTAACTGCTCAAGCTCACTGTAGCATATATTGTCCTTTTTAAAACGTGTATGTTAGGGAGAGGTTTCCACATTCTTATAAAGAATGTTTCGTTTCCCTCTCCAATCAATGTGGGGTCTCACAATCCACTTCCCTTGGGAGCCCAACATCCTCGCTGACACACCATTCAGTGCTTGACACTGATACTATTTGTAACAGCTCAAGCCCACTAGCAGATATTATCTTCGTTGAGTTTTTCCTTTCGAGCTTCTCCTCAAAGTTTTAAAACGCGTCTATTAGAGAGAGGTTTTCACACCCTTATAAAGAATGTTTTGTTCCCCTCTCTAACCAATGTGGGATCTCACAATCCACCCCATTGGGAGCCCAACATCCTCGTTGGCACACCTCCCGGTGCCTGGCTCTGATACTATTTGTAATAGCCCAACCCCAATCCTCTTTGGGTTTTTCCTTCTGGGCTCCCCTCAAAGTTTTAAAACGTTTCTTTTAGGGAGAGGTTTCCACACCCTTGTAAAGTATGTTTTGTTCCCCTCTCCAACCAATGTAAGATCTCACACAACGAACTCGTCGAATTCTATCGTCGCATAGAGTATAAGTACAGAAGGAATTCTGGCTTTATGCTCACAAAATTTTAGTTTATCTTTGTTTGGTGATGAATGAGTTGGATATATTGATCTGATATTAGTGAGTCTAACTAATAATGTCACTTGTTATATCTTTACTGTGAGTTCTCTCTCTTTCTATCTGTCATATCTGAAAAGGTGCAATGCCTTTTCTTAGGAGCAGAACATTTGCAGCAGGGACTGATTATGAGTTTTATCCTTGTTTTTGCCTCCAATCAGGACCATTATCTCAGTCCAAGAACACAAAATTTGAGTCAGTTTTCAAAATTTCAAGAAAAACATTCAGCTATATCTGTTCTCTTGTTAAGGAAGCTATGATGGCTAAAACTTCAAATTTTACCGACTTAAACGGCAAGCCTTTGTCTCTAAACGACCAAGTCGCTGTTGCTCTTAGGCGACTTTGCTCCGGTGAATCATTATCAAATATCGGTGACTCGTTTGGAATGAATCAATCATCAGTTTCTCAAATAACATGGCGTTTTGTAGAGGCGATGGAAGAGAAAGGCATCCGCCATCTCTCGTGGCCTTCAACAGAAGAAGATATGGATCAGATAAAGTCCAAGTTCAAGAAAATCAGAGGTCTACCTAATTGTTGCGGTGTAATCGAAACGACGCACATTATGATGACTTTGCCAACGACAGAATCTGCAAATGGCGTCTGGCTTGATCGTGAGAAAAACTGCAGCATGATCTTGCAAGTGATTGTAGATCCAGAAATGAGATTCTGTGACATCATAACAGGTTGGCCAGGAAGCTTAAGCGACGCACTCGTGCTTGAAAGCTCAGGTTTTTTCAAACGTTCACAAGATGGCGAGCGGTTGAACGGCAAGAAGATGAAGCTCTCAGAAAGTTCAGAACTTGGAGAGTATATTATAGGAGACTCTGGCTTTCCACTGTTGCCATGGCTACTGACCCCTTACCAAGGGAAAGGCCTTGCAGATTACCAGACTGAGTTCAATAAGCGCCATTTCAGTACCCGGTTGGTGGCTCAAAGGGCATTGACAAGGTTGAAAGAGATGTGGAAGATCATTAAAGGGATAATGTGGAAGCCTGATAAACATAAGCTACCAAGGATCATTCTTGTTTGCTGCTTACTTCACAATATAATGATCGATATGGAGGACGAGATGCAAGACGAAATGCCGTTGTCTCATCATCACGATCCGAGTTACCGACAACAAAGTTGCAAATTCGTTGACAATACTGCTTCGATCACGAGGGAGAAACTTTCCATGTACTTATCTGAAAAGTTAACACCCTAA

mRNA sequence

TTCTTCTTTTGCCTCATCTTTGCTTCTTTTTCGAGTTTCGAATGGGACCCATTAGAGGGTTCAAGAGGAAGAAGCAGAAGAAGGCACAGAAAAAGGTTCAGCAATACGTCTTCGCTGCTGCTTCACTGTCGTTTCAGCCACAGCCCTTGGATTGGTGGGATGAGTTCTCACAGAGGATTACTGGACCATTATCTCAGTCCAAGAACACAAAATTTGAGTCAGTTTTCAAAATTTCAAGAAAAACATTCAGCTATATCTGTTCTCTTGTTAAGGAAGCTATGATGGCTAAAACTTCAAATTTTACCGACTTAAACGGCAAGCCTTTGTCTCTAAACGACCAAGTCGCTGTTGCTCTTAGGCGACTTTGCTCCGGTGAATCATTATCAAATATCGGTGACTCGTTTGGAATGAATCAATCATCAGTTTCTCAAATAACATGGCGTTTTGTAGAGGCGATGGAAGAGAAAGGCATCCGCCATCTCTCGTGGCCTTCAACAGAAGAAGATATGGATCAGATAAAGTCCAAGTTCAAGAAAATCAGAGGTCTACCTAATTGTTGCGGTGTAATCGAAACGACGCACATTATGATGACTTTGCCAACGACAGAATCTGCAAATGGCGTCTGGCTTGATCGTGAGAAAAACTGCAGCATGATCTTGCAAGTGATTGTAGATCCAGAAATGAGATTCTGTGACATCATAACAGGTTGGCCAGGAAGCTTAAGCGACGCACTCGTGCTTGAAAGCTCAGGTTTTTTCAAACGTTCACAAGATGGCGAGCGGTTGAACGGCAAGAAGATGAAGCTCTCAGAAAGTTCAGAACTTGGAGAGTATATTATAGGAGACTCTGGCTTTCCACTGTTGCCATGGCTACTGACCCCTTACCAAGGGAAAGGCCTTGCAGATTACCAGACTGAGTTCAATAAGCGCCATTTCAGTACCCGGTTGGTGGCTCAAAGGGCATTGACAAGGTTGAAAGAGATGTGGAAGATCATTAAAGGGATAATGTGGAAGCCTGATAAACATAAGCTACCAAGGATCATTCTTGTTTGCTGCTTACTTCACAATATAATGATCGATATGGAGGACGAGATGCAAGACGAAATGCCGTTGTCTCATCATCACGATCCGAGTTACCGACAACAAAGTTGCAAATTCGTTGACAATACTGCTTCGATCACGAGGGAGAAACTTTCCATGTACTTATCTGAAAAGTTAACACCCTAA

Coding sequence (CDS)

ATGGGACCCATTAGAGGGTTCAAGAGGAAGAAGCAGAAGAAGGCACAGAAAAAGGTTCAGCAATACGTCTTCGCTGCTGCTTCACTGTCGTTTCAGCCACAGCCCTTGGATTGGTGGGATGAGTTCTCACAGAGGATTACTGGACCATTATCTCAGTCCAAGAACACAAAATTTGAGTCAGTTTTCAAAATTTCAAGAAAAACATTCAGCTATATCTGTTCTCTTGTTAAGGAAGCTATGATGGCTAAAACTTCAAATTTTACCGACTTAAACGGCAAGCCTTTGTCTCTAAACGACCAAGTCGCTGTTGCTCTTAGGCGACTTTGCTCCGGTGAATCATTATCAAATATCGGTGACTCGTTTGGAATGAATCAATCATCAGTTTCTCAAATAACATGGCGTTTTGTAGAGGCGATGGAAGAGAAAGGCATCCGCCATCTCTCGTGGCCTTCAACAGAAGAAGATATGGATCAGATAAAGTCCAAGTTCAAGAAAATCAGAGGTCTACCTAATTGTTGCGGTGTAATCGAAACGACGCACATTATGATGACTTTGCCAACGACAGAATCTGCAAATGGCGTCTGGCTTGATCGTGAGAAAAACTGCAGCATGATCTTGCAAGTGATTGTAGATCCAGAAATGAGATTCTGTGACATCATAACAGGTTGGCCAGGAAGCTTAAGCGACGCACTCGTGCTTGAAAGCTCAGGTTTTTTCAAACGTTCACAAGATGGCGAGCGGTTGAACGGCAAGAAGATGAAGCTCTCAGAAAGTTCAGAACTTGGAGAGTATATTATAGGAGACTCTGGCTTTCCACTGTTGCCATGGCTACTGACCCCTTACCAAGGGAAAGGCCTTGCAGATTACCAGACTGAGTTCAATAAGCGCCATTTCAGTACCCGGTTGGTGGCTCAAAGGGCATTGACAAGGTTGAAAGAGATGTGGAAGATCATTAAAGGGATAATGTGGAAGCCTGATAAACATAAGCTACCAAGGATCATTCTTGTTTGCTGCTTACTTCACAATATAATGATCGATATGGAGGACGAGATGCAAGACGAAATGCCGTTGTCTCATCATCACGATCCGAGTTACCGACAACAAAGTTGCAAATTCGTTGACAATACTGCTTCGATCACGAGGGAGAAACTTTCCATGTACTTATCTGAAAAGTTAACACCCTAA

Protein sequence

MGPIRGFKRKKQKKAQKKVQQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHHHDPSYRQQSCKFVDNTASITREKLSMYLSEKLTP

Homology

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BLAST of CmaCh04G012040 vs. Swiss-Prot
Match: HARB1_DANRE (Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-26
Identity = 77/291 (26.46%), Postives = 145/291 (49.83%), Query Frame = 1


Query: 60  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 119
           + F   R+   Y+  L+K++++ +T        + +S + Q+  AL    SG   S +GD
Sbjct: 37  NTFGFPREFIYYLVELLKDSLLRRTQR-----SRAISPDVQILAALGFYTSGSFQSKMGD 96

Query: 120 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETT 179
           + G++Q+S+S+      +A+ EK    + +   E    Q K +F +I G+PN  GV++  
Sbjct: 97  AIGISQASMSRCVSNVTKALIEKAPEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCA 156

Query: 180 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 239
           HI +  P  + ++  +++++   S+  Q++ D         T WPGSL+D  V + S   
Sbjct: 157 HIAIKAPNADDSS--YVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVA 216

Query: 240 KRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQG-KGLADYQTEFNKRHF 299
           K  ++            E+ + G +++GD+ +PL  WL+TP Q  +  ADY+  +N  H 
Sbjct: 217 KLFEE-----------QENDDEG-WLLGDNRYPLKKWLMTPVQSPESPADYR--YNLAHT 276

Query: 300 STRLVAQRALTRLKEMWKIIKG----IMWKPDKHKLPRIILVCCLLHNIMI 346
           +T  +  R    ++  ++ + G    + + P+  K   II  CC+LHNI +
Sbjct: 277 TTHEIVDRTFRAIQTRFRCLDGAKGYLQYSPE--KCSHIIQACCVLHNISL 304

[Close]

BLAST of CmaCh04G012040 vs. Swiss-Prot
Match: HARB1_RAT (Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-24
Identity = 75/292 (25.68%), Postives = 141/292 (48.29%), Query Frame = 1


Query: 60  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 119
           S++   R+   Y+  L+  ++   T        + +S   Q+  AL    SG   + +GD
Sbjct: 37  SMYGFPRQFIYYLVELLGASLSRPTQR-----SRAISPETQILAALGFYTSGSFQTRMGD 96

Query: 120 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETT 179
           + G++Q+S+S+      EA+ E+  + + +P+ E  +  +K +F  + G+P   G ++  
Sbjct: 97  AIGISQASMSRCVANVTEALVERASQFIHFPADEAAIQSLKDEFYGLAGMPGVIGAVDCI 156

Query: 180 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 239
           H+ +  P  E  +  +++R+   S+   V+ D       + T WPGSL D  VL+ S   
Sbjct: 157 HVAIKAPNAEDLS--YVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSLS 216

Query: 240 KRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTP-YQGKGLADYQTEFNKRHF 299
            + + G   +              +++GDS F L  WLLTP +  +  A+Y+  +N+ H 
Sbjct: 217 SQFETGMPKDS-------------WLLGDSSFFLHTWLLTPLHIPETPAEYR--YNRAHS 276

Query: 300 STRLVAQRALTRLKEMWKIIKG----IMWKPDKHKLPRIILVCCLLHNIMID 347
           +T  V ++ L  L   ++ + G    + + P+K     IIL CC+LHNI ++
Sbjct: 277 ATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEKSS--HIILACCVLHNISLE 304

[Close]

BLAST of CmaCh04G012040 vs. Swiss-Prot
Match: HARB1_MOUSE (Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.4e-24
Identity = 84/331 (25.38%), Postives = 152/331 (45.92%), Query Frame = 1


Query: 60  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 119
           S++   R+   ++  L+  ++   T        + +S   Q+  AL    SG   + +GD
Sbjct: 37  SMYGFPRQFIYFLVELLGASLSRPTQR-----SRAISPETQILAALGFYTSGSFQTRMGD 96

Query: 120 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETT 179
           + G++Q+S+S+      EA+ E+  + + +P  E  +  +K +F  + G+P   GV +  
Sbjct: 97  AIGISQASMSRCVANVTEALVERASQFIHFPVDEAAVQSLKDEFYGLAGMPGVIGVADCI 156

Query: 180 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 239
           H+ +  P  E  +  +++R+   S+   V+ D       + T WPGSL D  VL+ S   
Sbjct: 157 HVAIKAPNAEDLS--YVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLT 216

Query: 240 KRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQ-GKGLADYQTEFNKRHF 299
            + + G   +              +++GDS F L  WLLTP    +  A+Y+  +N+ H 
Sbjct: 217 SQFETGMPKDS-------------WLLGDSSFFLRSWLLTPLPIPETAAEYR--YNRAHS 276

Query: 300 STRLVAQRALTRLKEMWKIIKG----IMWKPDKHKLPRIILVCCLLHNIMIDM-EDEMQD 359
           +T  V +R L  L   ++ + G    + + P+K     IIL CC+LHNI +D   D    
Sbjct: 277 ATHSVIERTLQTLCCRFRCLDGSKGALQYSPEK--CSHIILACCVLHNISLDHGMDVWSS 336

Query: 360 EMPLSHHHDPSYRQQSCKFVDNTASITREKL 385
            +P      P    +  + +D  A   R++L
Sbjct: 337 PVPGPIDQPPEGEDEHMESLDLEADRIRQEL 343

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BLAST of CmaCh04G012040 vs. TrEMBL
Match: A0A0A0KS64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180900 PE=4 SV=1)

HSP 1 Score: 746.1 bits (1925), Expect = 2.2e-212
Identity = 363/394 (92.13%), Postives = 380/394 (96.45%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFES 60
           MGPIRGFKRKK  K +KKV Q VFA+ASLS Q QPLDWWDEFSQRITGPLSQSKNTKFES
Sbjct: 1   MGPIRGFKRKK--KVEKKVDQNVFASASLSSQLQPLDWWDEFSQRITGPLSQSKNTKFES 60

Query: 61  VFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120
           VFKISRKTFSYICSLVKE MMAKTS+FTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS
Sbjct: 61  VFKISRKTFSYICSLVKEVMMAKTSSFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120

Query: 121 FGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETTH 180
           FG+NQSSVSQITWRFVEAMEEKG+ HLSWPSTEEDMD+IKSKFKKIRGLPNCCGV+ETTH
Sbjct: 121 FGLNQSSVSQITWRFVEAMEEKGLHHLSWPSTEEDMDKIKSKFKKIRGLPNCCGVVETTH 180

Query: 181 IMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFK 240
           IMMTLPT+ESANG+WLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVL+SSGFFK
Sbjct: 181 IMMTLPTSESANGIWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLQSSGFFK 240

Query: 241 RSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFST 300
            SQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGL DYQ EFNKRHF+T
Sbjct: 241 LSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLPDYQAEFNKRHFAT 300

Query: 301 RLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHH 360
           RLVAQRALTRLKEMWKIIKG+MWKPDKH+LPRIILVCCLLHNI+IDMEDE+QDEMPLSHH
Sbjct: 301 RLVAQRALTRLKEMWKIIKGVMWKPDKHRLPRIILVCCLLHNIVIDMEDEVQDEMPLSHH 360

Query: 361 HDPSYRQQSCKFVDNTASITREKLSMYLSEKLTP 395
           HDPSYRQQSC+FVDNTASI+REKLSMYLS KL P
Sbjct: 361 HDPSYRQQSCEFVDNTASISREKLSMYLSGKLPP 392

[Close]

BLAST of CmaCh04G012040 vs. TrEMBL
Match: A0A061FMZ6_THECC (RNA binding protein, putative OS=Theobroma cacao GN=TCM_042838 PE=4 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 8.6e-169
Identity = 287/400 (71.75%), Postives = 343/400 (85.75%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVF-----AAASLSFQPQPLDWWDEFSQRITGPLSQSKN 60
           MGPIRGFKR+K+   +K V Q V       A+SL  QPQPLDWWDEFS+RI+G LSQSK+
Sbjct: 1   MGPIRGFKRRKKAADKKVVDQNVLPSSAAVASSLGSQPQPLDWWDEFSKRISGTLSQSKD 60

Query: 61  TK-FESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESL 120
           +K FESVF+ISRKTF YICSLVKE MMA+ S+FTDLNGKPLSLNDQVAVALRRL SGESL
Sbjct: 61  SKSFESVFRISRKTFDYICSLVKEDMMARQSSFTDLNGKPLSLNDQVAVALRRLSSGESL 120

Query: 121 SNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCG 180
           S IGD+FGMNQS+VSQITWRFVEAMEE+G+ HLSWPSTE +M+QIKSKF+KIRGLPNCCG
Sbjct: 121 SIIGDTFGMNQSTVSQITWRFVEAMEERGLHHLSWPSTEAEMEQIKSKFEKIRGLPNCCG 180

Query: 181 VIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLE 240
            I+ TH++MTLPT + +N VW DREKN SMILQ +VDPEMRF D+I GWPGSLSDA+VL 
Sbjct: 181 AIDITHVVMTLPTMDPSNNVWFDREKNYSMILQAVVDPEMRFRDVIAGWPGSLSDAIVLR 240

Query: 241 SSGFFKRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFN 300
           SSGFF+ S++G+RLNGKK+ +SE +++ EYIIGD+GFPLLPWL TPYQGKGL+D Q EFN
Sbjct: 241 SSGFFRLSEEGKRLNGKKLNISEGTDIREYIIGDAGFPLLPWLFTPYQGKGLSDLQVEFN 300

Query: 301 KRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDE 360
           KRH +TR+VAQ AL RLKEMW+II G+MW PDK++LPRI+LVCCLLHNI+ID+EDE+ D+
Sbjct: 301 KRHAATRMVAQMALARLKEMWRIIHGVMWMPDKNRLPRIVLVCCLLHNILIDLEDEVLDD 360

Query: 361 MPLSHHHDPSYRQQSCKFVDNTASITREKLSMYLSEKLTP 395
           M LSHHHD  YR+Q+C+ +D +A I R+KLS+YL+ KL P
Sbjct: 361 MSLSHHHDTGYRRQNCESLDKSALIMRDKLSLYLTGKLPP 400

[Close]

BLAST of CmaCh04G012040 vs. TrEMBL
Match: A0A0B0NEP8_GOSAR (Putative nuclease HARBI1 OS=Gossypium arboreum GN=F383_15215 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 5.7e-165
Identity = 279/395 (70.63%), Postives = 340/395 (86.08%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTK-FE 60
           MGPI+GFKR+K K A KKV  +    +SL  QPQPLDWWDEFS RI+GPLSQSK ++ FE
Sbjct: 1   MGPIKGFKRRK-KTADKKVVDHNVLPSSLGSQPQPLDWWDEFSNRISGPLSQSKGSQSFE 60

Query: 61  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 120
           SVF+ISRKTF+YICSLVK+ +MA+ S++TD+ GKPLSLNDQVAVALRRL SGESLS IGD
Sbjct: 61  SVFRISRKTFNYICSLVKDDLMARQSSYTDIYGKPLSLNDQVAVALRRLSSGESLSIIGD 120

Query: 121 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETT 180
           +FGMNQS+VSQITWRFVE+MEE+G+ HLSWPSTEE+M+QIKSKF+KIRGLPNCCG I+ T
Sbjct: 121 TFGMNQSTVSQITWRFVESMEERGLHHLSWPSTEEEMEQIKSKFEKIRGLPNCCGAIDIT 180

Query: 181 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 240
           HI+MTLPT + +N VW DREKN SM+LQ +VDPEMRF D+I GWPGSLSDA+VL+SSG F
Sbjct: 181 HIVMTLPTMDPSNHVWFDREKNYSMVLQAVVDPEMRFRDVIVGWPGSLSDAVVLQSSGLF 240

Query: 241 KRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFS 300
           + S++G+RLNGKK+ +SE +E+ EYIIGD+GFPLLPWL TPYQGK L+D Q EFNKRH +
Sbjct: 241 RLSEEGKRLNGKKLNISEGTEIREYIIGDAGFPLLPWLFTPYQGKSLSDLQIEFNKRHAA 300

Query: 301 TRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSH 360
           TR+VA+ AL RLKEMW+II G+MW PD+++LPRIILVCCLLHNI+ID+EDE+ D+M LSH
Sbjct: 301 TRMVAEMALARLKEMWRIIHGVMWMPDRNRLPRIILVCCLLHNILIDLEDEVLDDMSLSH 360

Query: 361 HHDPSYRQQSCKFVDNTASITREKLSMYLSEKLTP 395
            HD  Y +Q+C+  D +ASITR+KLS+YL+ KL P
Sbjct: 361 QHDIDYHRQNCESFDQSASITRDKLSLYLTGKLPP 394

[Close]

BLAST of CmaCh04G012040 vs. TrEMBL
Match: A0A067FX22_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015432mg PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 2.0e-157
Identity = 276/409 (67.48%), Postives = 328/409 (80.20%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVFAAA--------------SLSFQPQPLDWWDEFSQRI 60
           MGPIRG KR+K  KA+KKV Q V AAA              SL  QPQPLDWWD FS+RI
Sbjct: 1   MGPIRGLKRRK--KAEKKVDQNVLAAAAASDGDGDGDADADSLVAQPQPLDWWDNFSRRI 60

Query: 61  TGPLSQSKNTK-FESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVAL 120
           +GPL  SK +K FESVFKISRKTF YICSLVKE + A+ SNF+  NGKPLS ND VA+AL
Sbjct: 61  SGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIAL 120

Query: 121 RRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKK 180
           RRL SGESL  IGD FG+NQS+VSQ+TWRFVE+MEE+G+ HL WPS E +M+ IKSKF+K
Sbjct: 121 RRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFEK 180

Query: 181 IRGLPNCCGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPG 240
           IRG  NCCG I+ THI+M +P  + AN VW DREKN SMILQ IVDPEMRF DII GWPG
Sbjct: 181 IRGFRNCCGAIDITHIVMNIPAVDPANNVWYDREKNYSMILQGIVDPEMRFRDIIAGWPG 240

Query: 241 SLSDALVLESSGFFKRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKG 300
           SL+DALVL +SGFFK +++G+RL+GK ++LSE  EL EYIIGD+GFPLLPWLLTPYQGKG
Sbjct: 241 SLTDALVLRNSGFFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGKG 300

Query: 301 LADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMI 360
           L+D + E+NKRH +TR+VAQ AL RLK++W+II G+MW PDK++LPRI+LVCCLLHNI+I
Sbjct: 301 LSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHGVMWMPDKNRLPRIVLVCCLLHNIVI 360

Query: 361 DMEDEMQDEMPLSHHHDPSYRQQSCKFVDNTASITREKLSMYLSEKLTP 395
           DMEDEM DE+PLS+HHD  Y QQ+C+ VD TAS+ R+ LS+YLS KL P
Sbjct: 361 DMEDEMLDELPLSYHHDSGYHQQTCESVDKTASVMRDNLSLYLSGKLPP 407

[Close]

BLAST of CmaCh04G012040 vs. TrEMBL
Match: A0A067K0W6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18441 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 4.9e-156
Identity = 269/398 (67.59%), Postives = 329/398 (82.66%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVFAAASLSFQPQ---PLDWWDEFSQRITGPLSQSKNT- 60
           MGPIRGFKR+K  KA+KKV Q V AAA  S  PQ   PLDWWD+FS+RITGPLS+S+N+ 
Sbjct: 1   MGPIRGFKRRK--KAEKKVDQNVLAAALSSLHPQSQQPLDWWDDFSKRITGPLSESRNSM 60

Query: 61  KFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSN 120
           KFESVFKISRKTF+YICSLV + + A+ SNF+  NGKPLSLNDQVA+ALRRL SGESLSN
Sbjct: 61  KFESVFKISRKTFNYICSLVNDVLTARQSNFSSTNGKPLSLNDQVAIALRRLSSGESLSN 120

Query: 121 IGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVI 180
           IGD+FG+NQS+VS +TWRFVEAMEE+G+ HL WPS++ +M+++KSKF+K+ GLPNCCGVI
Sbjct: 121 IGDAFGINQSTVSHLTWRFVEAMEERGLDHLRWPSSQTEMEEVKSKFEKLHGLPNCCGVI 180

Query: 181 ETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESS 240
           +TTHI+MTL   + +N VW+DREKN SM+LQ IVDP+MR  D+I G+PGSLSDALVL++S
Sbjct: 181 DTTHIVMTLSAVDHSNDVWIDREKNHSMVLQAIVDPDMRIRDVIVGYPGSLSDALVLQNS 240

Query: 241 GFFKRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKR 300
            F+K S++G+RLNGKK+KL E +ELGEYIIGD+GFPLLPWLLTP+Q   L  +Q EFNK 
Sbjct: 241 SFYKLSEEGKRLNGKKIKLMEGAELGEYIIGDAGFPLLPWLLTPFQ-HALPGHQAEFNKL 300

Query: 301 HFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMP 360
           H + R+VAQ AL RLKEMW+I+ G+MW PDK+KLPRII VCCLLHNI+IDMED+  +EMP
Sbjct: 301 HSAARVVAQIALARLKEMWRIMHGVMWLPDKNKLPRIIFVCCLLHNIVIDMEDKALEEMP 360

Query: 361 LSHHHDPSYRQQSCKFVDNTASITREKLSMYLSEKLTP 395
           +SHHHD  YRQQ C+    T +  REK S Y+S KL P
Sbjct: 361 MSHHHDKDYRQQICESASKTGTDMREKFSYYISNKLPP 395

[Close]

BLAST of CmaCh04G012040 vs. TAIR10
Match: AT3G55350.1 (AT3G55350.1 PIF / Ping-Pong family of plant transposases)

HSP 1 Score: 489.6 bits (1259), Expect = 1.8e-138
Identity = 247/409 (60.39%), Postives = 302/409 (73.84%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVFAAASLSF------------------QPQPLDWWDEF 60
           MGPI+  K+KK  +A+KKV + V  AA+ +                     Q LDWWD F
Sbjct: 1   MGPIKTIKKKK--RAEKKVDRNVLLAATAAATSASAAAALNNNDDDDDSSSQSLDWWDGF 60

Query: 61  SQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVA 120
           S+RI G  +  K   FESVFKISRKTF YICSLVK    AK +NF+D NG PLSLND+VA
Sbjct: 61  SRRIYGGSTDPKT--FESVFKISRKTFDYICSLVKADFTAKPANFSDSNGNPLSLNDRVA 120

Query: 121 VALRRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSK 180
           VALRRL SGESLS IG++FGMNQS+VSQITWRFVE+MEE+ I HLSWPS    +D+IKSK
Sbjct: 121 VALRRLGSGESLSVIGETFGMNQSTVSQITWRFVESMEERAIHHLSWPSK---LDEIKSK 180

Query: 181 FKKIRGLPNCCGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITG 240
           F+KI GLPNCCG I+ THI+M LP  E +N VWLD EKN SM LQ +VDP+MRF D+I G
Sbjct: 181 FEKISGLPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAG 240

Query: 241 WPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQ 300
           WPGSL+D +VL++SGF+K  + G+RLNG+K+ LSE +EL EYI+GDSGFPLLPWLLTPYQ
Sbjct: 241 WPGSLNDDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDSGFPLLPWLLTPYQ 300

Query: 301 GKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHN 360
           GK  +  QTEFNKRH      AQ AL++LK+ W+II G+MW PD+++LPRII VCCLLHN
Sbjct: 301 GKPTSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWMPDRNRLPRIIFVCCLLHN 360

Query: 361 IMIDMEDEMQDEMPLSHHHDPSYRQQSCKFVDNTASITREKLSMYLSEK 392
           I+IDMED+  D+ PLS  HD +YRQ+SCK  D  +S+ R++LS  L  K
Sbjct: 361 IIIDMEDQTLDDQPLSQQHDMNYRQRSCKLADEASSVLRDELSDQLCGK 402

[Close]

BLAST of CmaCh04G012040 vs. TAIR10
Match: AT3G63270.1 (AT3G63270.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 351.7 bits (901), Expect = 6.0e-97
Identity = 173/396 (43.69%), Postives = 261/396 (65.91%), Query Frame = 1


Query: 1   MGPIRGFKRKKQK------KAQKKVQQYVFAAASLSFQPQPLDWWDEFSQRITGP-LSQS 60
           M P++  K+ K+K      K  K  ++    A  L  +    DWWD F  R + P +   
Sbjct: 1   MAPVKQKKKNKKKPLDKAKKLAKNKEKKRVNAVPLDPEAIDCDWWDTFWLRNSSPSVPSD 60

Query: 61  KNTKFESVFKISRKTFSYICSLVKEAMMAKT-SNFTDLNGKPLSLNDQVAVALRRLCSGE 120
           ++  F+  F+ S+ TFSYICSLV+E ++++  S   ++ G+ LS+  QVA+ALRRL SG+
Sbjct: 61  EDYAFKHFFRASKTTFSYICSLVREDLISRPPSGLINIEGRLLSVEKQVAIALRRLASGD 120

Query: 121 SLSNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNC 180
           S  ++G +FG+ QS+VSQ+TWRF+EA+EE+   HL WP ++  +++IKSKF+++ GLPNC
Sbjct: 121 SQVSVGAAFGVGQSTVSQVTWRFIEALEERAKHHLRWPDSDR-IEEIKSKFEEMYGLPNC 180

Query: 181 CGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALV 240
           CG I+TTHI+MTLP  ++++  W D+EKN SM LQ + D EMRF +++TGWPG ++ + +
Sbjct: 181 CGAIDTTHIIMTLPAVQASDD-WCDQEKNYSMFLQGVFDHEMRFLNMVTGWPGGMTVSKL 240

Query: 241 LESSGFFKRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTE 300
           L+ SGFFK  ++ + L+G    LS+ +++ EY++G   +PLLPWL+TP+     +D    
Sbjct: 241 LKFSGFFKLCENAQILDGNPKTLSQGAQIREYVVGGISYPLLPWLITPHDSDHPSDSMVA 300

Query: 301 FNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQ 360
           FN+RH   R VA  A  +LK  W+I+  +MW+PD+ KLP IILVCCLLHNI+ID  D +Q
Sbjct: 301 FNERHEKVRSVAATAFQQLKGSWRILSKVMWRPDRRKLPSIILVCCLLHNIIIDCGDYLQ 360

Query: 361 DEMPLSHHHDPSYRQQSCKFVDNTASITREKLSMYL 389
           +++PLS HHD  Y  + CK  +   S  R  L+ +L
Sbjct: 361 EDVPLSGHHDSGYADRYCKQTEPLGSELRGCLTEHL 394

[Close]

BLAST of CmaCh04G012040 vs. TAIR10
Match: AT5G12010.1 (AT5G12010.1 unknown protein)

HSP 1 Score: 148.7 bits (374), Expect = 7.7e-36
Identity = 93/324 (28.70%), Postives = 164/324 (50.62%), Query Frame = 1


Query: 38  WWDEFSQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSL 97
           WW+E S R+  P        F+  F++S+ TF  IC  +  A+  + +   +     + +
Sbjct: 161 WWEECS-RLDYP-----EEDFKKAFRMSKSTFELICDELNSAVAKEDTALRNA----IPV 220

Query: 98  NDQVAVALRRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGI-RHLSWPSTEEDM 157
             +VAV + RL +GE L  +   FG+  S+  ++     +A+++  + ++L WP  +E +
Sbjct: 221 RQRVAVCIWRLATGEPLRLVSKKFGLGISTCHKLVLEVCKAIKDVLMPKYLQWPD-DESL 280

Query: 158 DQIKSKFKKIRGLPNCCGVIETTHIMMTLPTTESAN-----GVWLDREKNCSMILQVIVD 217
             I+ +F+ + G+PN  G + TTHI +  P    A+         +++ + S+ +Q +V+
Sbjct: 281 RNIRERFESVSGIPNVVGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITIQAVVN 340

Query: 218 PEMRFCDIITGWPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSESSELGEYIIGDSGF 277
           P+  F D+  GWPGS+ D  VLE S  ++R+ +G  L G             ++ G  G 
Sbjct: 341 PKGVFTDLCIGWPGSMPDDKVLEKSLLYQRANNGGLLKGM------------WVAGGPGH 400

Query: 278 PLLPWLLTPYQGKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLP 337
           PLL W+L PY  + L   Q  FN++    + VA+ A  RLK  W  ++    +     LP
Sbjct: 401 PLLDWVLVPYTQQNLTWTQHAFNEKMSEVQGVAKEAFGRLKGRWACLQK-RTEVKLQDLP 460

Query: 338 RIILVCCLLHNIMIDMEDEMQDEM 356
            ++  CC+LHNI    E++M+ E+
Sbjct: 461 TVLGACCVLHNICEMREEKMEPEL 460

[Close]

BLAST of CmaCh04G012040 vs. TAIR10
Match: AT4G29780.1 (AT4G29780.1 unknown protein)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-29
Identity = 97/355 (27.32%), Postives = 166/355 (46.76%), Query Frame = 1


Query: 37  DWWDEFSQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLS 96
           DWWD  S+            +F   F++S+ TF+ IC  +   +  K +   D    P  
Sbjct: 198 DWWDRVSR------PDFPEDEFRREFRMSKSTFNLICEELDTTVTKKNTMLRDAIPAP-- 257

Query: 97  LNDQVAVALRRLCSGESLSNIGDSFGMNQSSVSQITWRFVEAMEEKGI-RHLSWPSTEED 156
              +V V + RL +G  L ++ + FG+  S+  ++      A+ +  + ++L WPS  E 
Sbjct: 258 --KRVGVCVWRLATGAPLRHVSERFGLGISTCHKLVIEVCRAIYDVLMPKYLLWPSDSE- 317

Query: 157 MDQIKSKFKKIRGLPNCCGVIETTHIMMTLPTTESA-----NGVWLDREKNCSMILQVIV 216
           ++  K+KF+ +  +PN  G I TTHI +  P    A          +++ + S+ +Q +V
Sbjct: 318 INSTKAKFESVHKIPNVVGSIYTTHIPIIAPKVHVAAYFNKRHTERNQKTSYSITVQGVV 377

Query: 217 DPEMRFCDIITGWPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSESSELGEYIIGDSG 276
           + +  F D+  G PGSL+D  +LE S          R    +  L +S     +I+G+SG
Sbjct: 378 NADGIFTDVCIGNPGSLTDDQILEKSSL-------SRQRAARGMLRDS-----WIVGNSG 437

Query: 277 FPLLPWLLTPYQGKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKL 336
           FPL  +LL PY  + L   Q  FN+     + +A  A  RLK  W  ++    +     L
Sbjct: 438 FPLTDYLLVPYTRQNLTWTQHAFNESIGEIQGIATAAFERLKGRWACLQK-RTEVKLQDL 497

Query: 337 PRIILVCCLLHNIMIDMEDEMQDEMPLSHHHDPSYRQQSCKFVDNTASITREKLS 386
           P ++  CC+LHNI    ++EM  E+      D +  + + +    +A  TR+ +S
Sbjct: 498 PYVLGACCVLHNICEMRKEEMLPELKFEVFDDVAVPENNIR--SASAVNTRDHIS 526

[Close]

BLAST of CmaCh04G012040 vs. TAIR10
Match: AT1G72270.1 (AT1G72270.1 Ribosome 60S biogenesis N-terminal (InterPro:IPR021714))

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-19
Identity = 77/312 (24.68%), Postives = 134/312 (42.95%), Query Frame = 1


Query: 42  FSQRITGPLSQSKNTKFESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQV 101
           F++ +T       + ++   F++S+ TF  + S++  + +                    
Sbjct: 81  FNRFLTSATEDEDDPRWCLYFRMSKSTFFSLYSILSHSSLPS-----------------F 140

Query: 102 AVALRRLCSGESLSNIGDSFGMNQSS-VSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIK 161
           A  + RL  G S   +   FG + +S  S+  +   + + EK           + +D  K
Sbjct: 141 AATIFRLAHGASYECLVHRFGFDSTSQASRSFFTVCKLINEK---------LSQQLDDPK 200

Query: 162 SKFKKIRGLPNCCGVIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDII 221
             F     LPNC GV+                G  L  +   S+++Q +VD   RF DI 
Sbjct: 201 PDFSP-NLLPNCYGVVGFGRF--------EVKGKLLGAKG--SILVQALVDSNGRFVDIS 260

Query: 222 TGWPGSLSDALVLESSGFFKRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTP 281
            GWP ++    +   +  F  ++  E L+G   KL     +  YI+GDS  PLLPWL+TP
Sbjct: 261 AGWPSTMKPEAIFRQTKLFSIAE--EVLSGAPTKLGNGVLVPRYILGDSCLPLLPWLVTP 320

Query: 282 YQ-GKGLADYQTEFNKRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHK-LPRIILVCC 341
           Y        ++ EFN    +     + A  +++  W+I+    WKP+  + +P +I   C
Sbjct: 321 YDLTSDEESFREEFNNVVHTGLHSVEIAFAKVRARWRILDK-KWKPETIEFMPFVITTGC 352

Query: 342 LLHNIMIDMEDE 351
           LLHN +++  D+
Sbjct: 381 LLHNFLVNSGDD 352

[Close]

BLAST of CmaCh04G012040 vs. NCBI nr
Match: gi|449459932|ref|XP_004147700.1| (PREDICTED: putative nuclease HARBI1 [Cucumis sativus])

HSP 1 Score: 746.1 bits (1925), Expect = 3.1e-212
Identity = 363/394 (92.13%), Postives = 380/394 (96.45%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFES 60
           MGPIRGFKRKK  K +KKV Q VFA+ASLS Q QPLDWWDEFSQRITGPLSQSKNTKFES
Sbjct: 1   MGPIRGFKRKK--KVEKKVDQNVFASASLSSQLQPLDWWDEFSQRITGPLSQSKNTKFES 60

Query: 61  VFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120
           VFKISRKTFSYICSLVKE MMAKTS+FTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS
Sbjct: 61  VFKISRKTFSYICSLVKEVMMAKTSSFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120

Query: 121 FGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETTH 180
           FG+NQSSVSQITWRFVEAMEEKG+ HLSWPSTEEDMD+IKSKFKKIRGLPNCCGV+ETTH
Sbjct: 121 FGLNQSSVSQITWRFVEAMEEKGLHHLSWPSTEEDMDKIKSKFKKIRGLPNCCGVVETTH 180

Query: 181 IMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFK 240
           IMMTLPT+ESANG+WLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVL+SSGFFK
Sbjct: 181 IMMTLPTSESANGIWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLQSSGFFK 240

Query: 241 RSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFST 300
            SQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGL DYQ EFNKRHF+T
Sbjct: 241 LSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLPDYQAEFNKRHFAT 300

Query: 301 RLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHH 360
           RLVAQRALTRLKEMWKIIKG+MWKPDKH+LPRIILVCCLLHNI+IDMEDE+QDEMPLSHH
Sbjct: 301 RLVAQRALTRLKEMWKIIKGVMWKPDKHRLPRIILVCCLLHNIVIDMEDEVQDEMPLSHH 360

Query: 361 HDPSYRQQSCKFVDNTASITREKLSMYLSEKLTP 395
           HDPSYRQQSC+FVDNTASI+REKLSMYLS KL P
Sbjct: 361 HDPSYRQQSCEFVDNTASISREKLSMYLSGKLPP 392

[Close]

BLAST of CmaCh04G012040 vs. NCBI nr
Match: gi|659123396|ref|XP_008461643.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 743.8 bits (1919), Expect = 1.5e-211
Identity = 362/394 (91.88%), Postives = 379/394 (96.19%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFES 60
           MGPIRGFKRKK  K +KKV Q VFA+ASLS Q QPLDWWDEFSQRITGPLSQSKNTKFES
Sbjct: 1   MGPIRGFKRKK--KVEKKVDQNVFASASLSSQLQPLDWWDEFSQRITGPLSQSKNTKFES 60

Query: 61  VFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120
           VFKISRKTFSYICSLVKE MMAKTS+FTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS
Sbjct: 61  VFKISRKTFSYICSLVKEVMMAKTSSFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120

Query: 121 FGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETTH 180
           FG+NQSSVSQITWRFVEAMEEKG+ HLSWPSTEEDMD+IKSKFKKIRGLPNCCGVIETTH
Sbjct: 121 FGLNQSSVSQITWRFVEAMEEKGLHHLSWPSTEEDMDKIKSKFKKIRGLPNCCGVIETTH 180

Query: 181 IMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFK 240
           IMMTLPT+ESANG+WLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSD+LVL+SSGFFK
Sbjct: 181 IMMTLPTSESANGIWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDSLVLQSSGFFK 240

Query: 241 RSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFST 300
            SQDGERLNGKKM+LSESSELGEYIIGDSGFPLLPWLLTPYQGKGL DYQ EFNKRHF+T
Sbjct: 241 LSQDGERLNGKKMRLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLPDYQAEFNKRHFAT 300

Query: 301 RLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHH 360
           RLVAQRALTRLKEMWKIIKG+MWKPDKH+LPRIILVCCLLHNI+IDMEDE+QDEMPLSHH
Sbjct: 301 RLVAQRALTRLKEMWKIIKGVMWKPDKHRLPRIILVCCLLHNIVIDMEDEVQDEMPLSHH 360

Query: 361 HDPSYRQQSCKFVDNTASITREKLSMYLSEKLTP 395
           HDPSYRQQSC+FVDNTASI REKLSMYLS KL P
Sbjct: 361 HDPSYRQQSCEFVDNTASIAREKLSMYLSGKLPP 392

[Close]

BLAST of CmaCh04G012040 vs. NCBI nr
Match: gi|1009120469|ref|XP_015876938.1| (PREDICTED: putative nuclease HARBI1 [Ziziphus jujuba])

HSP 1 Score: 606.3 bits (1562), Expect = 3.8e-170
Identity = 294/392 (75.00%), Postives = 337/392 (85.97%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTKFES 60
           MGP+RG K  K+KK +KKV Q V AA SL  +P+PLDWWD FSQRITGPL QSK  KFES
Sbjct: 1   MGPVRGLK--KRKKVEKKVDQNVLAA-SLGPEPEPLDWWDGFSQRITGPLLQSKKMKFES 60

Query: 61  VFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGDS 120
           VFKISRKTFSYICSLVKE MMAK SNF DLNGKPLSLNDQVAVALRRL +GESLS+IGDS
Sbjct: 61  VFKISRKTFSYICSLVKEDMMAKASNFVDLNGKPLSLNDQVAVALRRLSAGESLSSIGDS 120

Query: 121 FGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETTH 180
           F MNQS+VSQ+TWRFVE+MEE+G+ HL WPSTE +M++IKSKF+KIRGLPNCCG I+TTH
Sbjct: 121 FKMNQSTVSQLTWRFVESMEERGLHHLHWPSTETEMEEIKSKFEKIRGLPNCCGAIDTTH 180

Query: 181 IMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFFK 240
           IMMTLPT + ++ VWLD EKNCSMILQ IVDPEMRF ++ITGWPGSL+D +VL SSGFFK
Sbjct: 181 IMMTLPTMDPSSDVWLDHEKNCSMILQAIVDPEMRFRNVITGWPGSLNDDIVLRSSGFFK 240

Query: 241 RSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFST 300
              +G+ LNGKKM L E +ELGEYI+GD+GFPLLPWLLTPY+GK L D+Q E+NKR F+T
Sbjct: 241 LCGEGKMLNGKKMVLPEGTELGEYIVGDAGFPLLPWLLTPYRGKHLPDFQAEYNKRLFAT 300

Query: 301 RLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSHH 360
           ++VAQRAL RLKEMWKII G+MWKPDKHKLPRIILVCC+LHNI+IDMEDEMQDE+PLSHH
Sbjct: 301 KMVAQRALARLKEMWKIIHGVMWKPDKHKLPRIILVCCILHNIVIDMEDEMQDELPLSHH 360

Query: 361 HDPSYRQQSCKFVDNTASITREKLSMYLSEKL 393
           HD  Y Q + + VD +A I REKLS+ LS KL
Sbjct: 361 HDTGYHQLNSESVDKSALILREKLSLQLSGKL 389

[Close]

BLAST of CmaCh04G012040 vs. NCBI nr
Match: gi|590563694|ref|XP_007009443.1| (RNA binding protein, putative [Theobroma cacao])

HSP 1 Score: 601.3 bits (1549), Expect = 1.2e-168
Identity = 287/400 (71.75%), Postives = 343/400 (85.75%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVF-----AAASLSFQPQPLDWWDEFSQRITGPLSQSKN 60
           MGPIRGFKR+K+   +K V Q V       A+SL  QPQPLDWWDEFS+RI+G LSQSK+
Sbjct: 1   MGPIRGFKRRKKAADKKVVDQNVLPSSAAVASSLGSQPQPLDWWDEFSKRISGTLSQSKD 60

Query: 61  TK-FESVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESL 120
           +K FESVF+ISRKTF YICSLVKE MMA+ S+FTDLNGKPLSLNDQVAVALRRL SGESL
Sbjct: 61  SKSFESVFRISRKTFDYICSLVKEDMMARQSSFTDLNGKPLSLNDQVAVALRRLSSGESL 120

Query: 121 SNIGDSFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCG 180
           S IGD+FGMNQS+VSQITWRFVEAMEE+G+ HLSWPSTE +M+QIKSKF+KIRGLPNCCG
Sbjct: 121 SIIGDTFGMNQSTVSQITWRFVEAMEERGLHHLSWPSTEAEMEQIKSKFEKIRGLPNCCG 180

Query: 181 VIETTHIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLE 240
            I+ TH++MTLPT + +N VW DREKN SMILQ +VDPEMRF D+I GWPGSLSDA+VL 
Sbjct: 181 AIDITHVVMTLPTMDPSNNVWFDREKNYSMILQAVVDPEMRFRDVIAGWPGSLSDAIVLR 240

Query: 241 SSGFFKRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFN 300
           SSGFF+ S++G+RLNGKK+ +SE +++ EYIIGD+GFPLLPWL TPYQGKGL+D Q EFN
Sbjct: 241 SSGFFRLSEEGKRLNGKKLNISEGTDIREYIIGDAGFPLLPWLFTPYQGKGLSDLQVEFN 300

Query: 301 KRHFSTRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDE 360
           KRH +TR+VAQ AL RLKEMW+II G+MW PDK++LPRI+LVCCLLHNI+ID+EDE+ D+
Sbjct: 301 KRHAATRMVAQMALARLKEMWRIIHGVMWMPDKNRLPRIVLVCCLLHNILIDLEDEVLDD 360

Query: 361 MPLSHHHDPSYRQQSCKFVDNTASITREKLSMYLSEKLTP 395
           M LSHHHD  YR+Q+C+ +D +A I R+KLS+YL+ KL P
Sbjct: 361 MSLSHHHDTGYRRQNCESLDKSALIMRDKLSLYLTGKLPP 400

[Close]

BLAST of CmaCh04G012040 vs. NCBI nr
Match: gi|823255971|ref|XP_012460644.1| (PREDICTED: putative nuclease HARBI1 isoform X1 [Gossypium raimondii])

HSP 1 Score: 593.2 bits (1528), Expect = 3.3e-166
Identity = 280/393 (71.25%), Postives = 340/393 (86.51%), Query Frame = 1


Query: 1   MGPIRGFKRKKQKKAQKKVQQYVFAAASLSFQPQPLDWWDEFSQRITGPLSQSKNTK-FE 60
           MGPIRGFKR+K K A KKV  +   ++SL  Q QPLDWWD+FS+RI+GPLSQSK ++ FE
Sbjct: 1   MGPIRGFKRRK-KTADKKVVDHNVFSSSLESQLQPLDWWDDFSKRISGPLSQSKGSRSFE 60

Query: 61  SVFKISRKTFSYICSLVKEAMMAKTSNFTDLNGKPLSLNDQVAVALRRLCSGESLSNIGD 120
           S+F+IS+KTF+YICSLVKE MMA+ S++TD+NGKPLSLNDQVAVALRRL SGESLS IGD
Sbjct: 61  SIFRISKKTFNYICSLVKEDMMARQSSYTDINGKPLSLNDQVAVALRRLSSGESLSVIGD 120

Query: 121 SFGMNQSSVSQITWRFVEAMEEKGIRHLSWPSTEEDMDQIKSKFKKIRGLPNCCGVIETT 180
           +FGMNQS+VSQITWRFVEAMEEKG+ HL+WP TE +M+QIKSKF+KIRGLPNCCG I+ T
Sbjct: 121 TFGMNQSTVSQITWRFVEAMEEKGLHHLTWPLTEAEMEQIKSKFEKIRGLPNCCGAIDIT 180

Query: 181 HIMMTLPTTESANGVWLDREKNCSMILQVIVDPEMRFCDIITGWPGSLSDALVLESSGFF 240
           H++MTLPT + +N VW DREKN SMILQ +VDPEMR  D+I GWPGSLSDA+VL SSGFF
Sbjct: 181 HVVMTLPTMDPSNNVWFDREKNYSMILQAVVDPEMRLRDVIAGWPGSLSDAVVLRSSGFF 240

Query: 241 KRSQDGERLNGKKMKLSESSELGEYIIGDSGFPLLPWLLTPYQGKGLADYQTEFNKRHFS 300
           + S++G+RL GKK+ +SE  E+GEYIIGD+GFPLLPWLLTPYQGKGL+D Q EFNKRH +
Sbjct: 241 RLSEEGKRLTGKKLNISEGMEIGEYIIGDAGFPLLPWLLTPYQGKGLSDLQIEFNKRHAA 300

Query: 301 TRLVAQRALTRLKEMWKIIKGIMWKPDKHKLPRIILVCCLLHNIMIDMEDEMQDEMPLSH 360
           TR+VAQ AL RLKEMW+II G+MW PDK++LPRI+LVCCLLHNI+IDMEDE+ D+M LSH
Sbjct: 301 TRMVAQMALARLKEMWRIIHGVMWMPDKNRLPRIVLVCCLLHNILIDMEDEVFDDMSLSH 360

Query: 361 HHDPSYRQQSCKFVDNTASITREKLSMYLSEKL 393
           HHD  YR+Q+C++ D +A I R+KLS+Y++ KL
Sbjct: 361 HHDTGYRRQNCEYFDQSAMIMRDKLSLYITGKL 392

The following BLAST results are available for this feature:

BLAST of CmaCh04G012040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HARB1_DANRE	1.0e-26	26.46	Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1	[more]
HARB1_RAT	2.9e-24	25.68	Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1	[more]
HARB1_MOUSE	6.4e-24	25.38	Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1	[more]

BLAST of CmaCh04G012040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS64_CUCSA	2.2e-212	92.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180900 PE=4 SV=1	[more]
A0A061FMZ6_THECC	8.6e-169	71.75	RNA binding protein, putative OS=Theobroma cacao GN=TCM_042838 PE=4 SV=1	[more]
A0A0B0NEP8_GOSAR	5.7e-165	70.63	Putative nuclease HARBI1 OS=Gossypium arboreum GN=F383_15215 PE=4 SV=1	[more]
A0A067FX22_CITSI	2.0e-157	67.48	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015432mg PE=4 SV=1	[more]
A0A067K0W6_JATCU	4.9e-156	67.59	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18441 PE=4 SV=1	[more]

BLAST of CmaCh04G012040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55350.1	1.8e-138	60.39	PIF / Ping-Pong family of plant transposases	[more]
AT3G63270.1	6.0e-97	43.69	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]
AT5G12010.1	7.7e-36	28.70	unknown protein	[more]
AT4G29780.1	1.4e-29	27.32	unknown protein	[more]
AT1G72270.1	1.3e-19	24.68	Ribosome 60S biogenesis N-terminal (InterPro:IPR021714)	[more]

BLAST of CmaCh04G012040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459932\|ref\|XP_004147700.1\|	3.1e-212	92.13	PREDICTED: putative nuclease HARBI1 [Cucumis sativus]	[more]
gi\|659123396\|ref\|XP_008461643.1\|	1.5e-211	91.88	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
gi\|1009120469\|ref\|XP_015876938.1\|	3.8e-170	75.00	PREDICTED: putative nuclease HARBI1 [Ziziphus jujuba]	[more]
gi\|590563694\|ref\|XP_007009443.1\|	1.2e-168	71.75	RNA binding protein, putative [Theobroma cacao]	[more]
gi\|823255971\|ref\|XP_012460644.1\|	3.3e-166	71.25	PREDICTED: putative nuclease HARBI1 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027806	HARBI1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G012040.1	CmaCh04G012040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 176..342 score: 1.5
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 13..390 score: 5.8E
None	No IPR available	PANTHER	PTHR22930:SF45	SUBFAMILY NOT NAMED	coord: 13..390 score: 5.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G012040	Cucsa.379830	Cucumber (Gy14) v1	cgycmaB1049
CmaCh04G012040	Cla004027	Watermelon (97103) v1	cmawmB678
CmaCh04G012040	Csa5G180900	Cucumber (Chinese Long) v2	cmacuB746
CmaCh04G012040	ClCG07G003160	Watermelon (Charleston Gray)	cmawcgB673
CmaCh04G012040	CSPI05G09500	Wild cucumber (PI 183967)	cmacpiB756
CmaCh04G012040	CmoCh04G002330	Cucurbita moschata (Rifu)	cmacmoB731
CmaCh04G012040	CmoCh04G012760	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G012040	Lsi04G008700	Bottle gourd (USVL1VR-Ls)	cmalsiB676
CmaCh04G012040	Cp4.1LG01g10530	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G012040	Cp4.1LG01g04540	Cucurbita pepo (Zucchini)	cmacpeB723
CmaCh04G012040	MELO3C034253.2	Melon (DHL92) v3.6.1	cmamedB739
CmaCh04G012040	CsaV3_5G006910	Cucumber (Chinese Long) v3	cmacucB0884
CmaCh04G012040	Cla97C07G131470	Watermelon (97103) v2	cmawmbB780
CmaCh04G012040	Bhi07G000794	Wax gourd	cmawgoB0892
CmaCh04G012040	CsGy5G006820	Cucumber (Gy14) v2	cgybcmaB673
CmaCh04G012040	Carg23794	Silver-seed gourd	carcmaB1199
CmaCh04G012040	Carg00282	Silver-seed gourd	carcmaB0948

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G012040	CmaCh04G002290	Cucurbita maxima (Rimu)	cmacmaB531

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G012040	Cucurbita moschata (Rifu)	cmacmoB720
CmaCh04G012040	Cucurbita moschata (Rifu)	cmacmoB723
CmaCh04G012040	Cucurbita moschata (Rifu)	cmacmoB726
CmaCh04G012040	Wild cucumber (PI 183967)	cmacpiB729
CmaCh04G012040	Wild cucumber (PI 183967)	cmacpiB770
CmaCh04G012040	Cucumber (Chinese Long) v2	cmacuB720
CmaCh04G012040	Cucumber (Chinese Long) v2	cmacuB765
CmaCh04G012040	Melon (DHL92) v3.5.1	cmameB652
CmaCh04G012040	Melon (DHL92) v3.5.1	cmameB714
CmaCh04G012040	Watermelon (Charleston Gray)	cmawcgB652
CmaCh04G012040	Cucurbita pepo (Zucchini)	cmacpeB739
CmaCh04G012040	Cucurbita pepo (Zucchini)	cmacpeB752
CmaCh04G012040	Bottle gourd (USVL1VR-Ls)	cmalsiB631
CmaCh04G012040	Bottle gourd (USVL1VR-Ls)	cmalsiB642
CmaCh04G012040	Bottle gourd (USVL1VR-Ls)	cmalsiB666
CmaCh04G012040	Cucumber (Gy14) v2	cgybcmaB412
CmaCh04G012040	Cucumber (Gy14) v2	cgybcmaB555
CmaCh04G012040	Cucumber (Gy14) v2	cgybcmaB692
CmaCh04G012040	Melon (DHL92) v3.6.1	cmamedB771
CmaCh04G012040	Melon (DHL92) v3.6.1	cmamedB802
CmaCh04G012040	Silver-seed gourd	carcmaB0428
CmaCh04G012040	Silver-seed gourd	carcmaB0373
CmaCh04G012040	Cucumber (Chinese Long) v3	cmacucB0899
CmaCh04G012040	Cucumber (Chinese Long) v3	cmacucB0832
CmaCh04G012040	Cucumber (Chinese Long) v3	cmacucB0853
CmaCh04G012040	Cucumber (Chinese Long) v3	cmacucB0916
CmaCh04G012040	Watermelon (97103) v2	cmawmbB719
CmaCh04G012040	Watermelon (97103) v2	cmawmbB742
CmaCh04G012040	Watermelon (97103) v2	cmawmbB753
CmaCh04G012040	Watermelon (97103) v2	cmawmbB796
CmaCh04G012040	Wax gourd	cmawgoB0825
CmaCh04G012040	Wax gourd	cmawgoB0879
CmaCh04G012040	Wax gourd	cmawgoB0881
CmaCh04G012040	Cucurbita maxima (Rimu)	cmacmaB272
CmaCh04G012040	Cucurbita maxima (Rimu)	cmacmaB322
CmaCh04G012040	Cucurbita maxima (Rimu)	cmacmaB487
CmaCh04G012040	Cucurbita maxima (Rimu)	cmacmaB516
CmaCh04G012040	Cucurbita maxima (Rimu)	cmacmaB549
CmaCh04G012040	Cucumber (Gy14) v1	cgycmaB0472