Cp4.1LG01g09760 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g09760
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transcription factor IIIA
Location	Cp4.1LG01 : 7153290 .. 7156064 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGGAAGACGAGAGAAGCCGAGCAACACAGCTGAATTCTCAGTGGTGGACGTAGCTATTTCTGCAATTACTGTACCTTCGAGCCTCTTTCTTCCTTCCATCGTTGCCGTTGCAGCTGCTTGTTGGCATTCCAGCCACTGAAATCTCTCTGACGCACGTCCTGAAGGTGTGTCTGGATCTTGTGTTTTTATTCTTCTTCCTTTGTTCTCTTTGGATTCTTTCAATCAACTTCCAAGTAAGGTGAATTTGGAATTCGGTGGATTTTAAGTTGAAATCCTTCCGAATACGGGTCAACGAAACGGAGGGTCAGTGTTGTGTTCTGTTCAGATTTCGATTGAGTCTACATAGGCTAGGAATTTGTTCGTTTACATCGTTATTGACTGATTGAGGCTGGATTTGAGCATAGATTGCGATCTAGGTTTTCATTCAAAGTTGGCAAAGAATAGGTTCATGCTGGGAGTTATTGTTTGCGTTGGGGCTGTTTTAGGGGAGTTATTAGACAGATTAGGGTTTTATCCTGGAGCCTGACTGTCTTTTTGAAACGAAGGTTTTCTACGTTTTACCAAAAGGGATTTATTAATATTTATTTTATGACCGGAGGCAAATTGTTTATTTGAATGCATTATTTATTTACCTTATTCATTTTATAGATGGAGAGTGGGAAACATAATGATGAAGGAGGTGATAAGACAAAAAATGGAAAATCCAATATCTGCCAGGAATGTGGCGCTGAGTTCAGAAAACCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTTGAGGTAGTTTCATTTACTTAATCATGTGATCCTTTGGTAATAGTACAGAAGTGTAGTTTATTTCATGTCTATATTGCTAGTTGTGTGCTAATGGATTCACCAGCATACTTATCATCCAAGGCGTTCAAGTTTGATCTATTTCAAGTGCAATATACTAATAGTTATGCAGAATATACATCATGATTCTTTGGTGGGCGGTTAATTTGCTTCATGAGGGTATCGATGGTCATCTAGATGCTTGCTTTTGGTTCCAATTACCCTTTCCGCTTCTCAAATATCGGATTGAAGGGAACTGTGTGATTTATTGTTTACATGGCTGTCCATCTGATTATGAATTATTTTAAAGTTCTTCATGTCAATTCAATTTTTTTTTTTTCTTGCATTGAAGTTGATTAGTTTTGCAGGAACAACTCCTTAAATATATTGAAATAATGTGATCCTGGATATATGAGCGTGAAGCATTGGATCCCACATTAAGAACTCCAAAATGCACGAGGCTGCATTTTCCTCACTTGATTGGATCAGTATCAGGTTGGGAGACCTCCTGAGAAGCTCCATCAAGTGGGCCTCGGTCACGCTACAGTAGTTTGAGGTTTGAAGTCTAGTAATTGAGAATGCTGTGGAAGAGGCTTTTTTTTAGCCAATACACTCAGAAGCTGACCAACTTTATTGCATTATTCTAATGCAGAGGCCATATATATGTTCCATAGATGGTTGTGAAGCTAGTTACAGAAGAAAGGATCATTTGACTCGCCACCTTCTCCATCATCAAGGATTGATAATCAAGTGCCCTATTGAAGGTTGTAGTCGTGAATTTGCATATATATCGTGTGTAAATAGACACTTAAAAGAATGCCATGAAGGAGGTGCTCCTCCCGAAGAATGTCAGAAGCAGTTTGTTTGCCCTGAAGATGGATGCGGGAAGGTTTTCCGATATGCCTCTCAACTGCAAAAGCATGAACATTCCCATTGTTAGTTCTAATCTAAAACTTTTATAATCACCTAGTTTTGACCATTTTTCTTAACATATTCATGTATTAATTTCAAATTCTCCTATTCTTCAGTTAAGCTAGACTCAATAGAGGCATGTTGTGCTGAACCGGGTTGTATGAAAACATTTACCAACAAGAAATGCCTCCAGGCTCATATGCAGTCCTGCCACCAATACATAAATTGTGAGATTTGTGGGGAAAAAAAATTGAGGAAGAACATGAAGCAACATCTACGACAAAAGCATGAAAGTCAAGGTTCACCAGAGGCAATTCCTTGTACGCATGAGGGCTGCAGTAAGGTTTTTTCAACAGTAAGTAGCCAGACTCTGTAAATTCTTCCATTGGTGAAACTACTTTTAGCTGAGCTATTGGGATGACATATTCTCTTCAATTAATCTCTCAGATTTCAAATCTCCACCAACACATGAAGGTCGTGCATCTCGGTGAAAAACCATTTGCTTGCGGTTTCCCTGGTTGTGGCATGAGATTTGGCTACAAGCATGTTCGAGATAATCATGAGAAGAAGGGCCAGCATGTTTACACTAATGTAAGTTCTCATTTGGTAAACTCTACAAGCACTTTTGACCTTCGGATAGATCGTTAAAGGGGAGCGTGTTGTTACTCTGTGATCAGGGGGATTTTGAAGCAGCTGATGAACAATTCCGGTCAAAGCCAAGGGGAGGGAGAAAAAGGATCCGTCCAACCGTTGAAATGCTTATAAGGAAGAGGATTACCCCCCCAAGTGAGTTGGATTTCATCATGATTGATGAGGAATGTTAAGTGTCTTGTCTGGTTTGTCTGAAGGCCTCTCTACTCGAAAGGAGCCAACCCCTTCTGTTCATTAAATGTATAGAATCTGTATTTTACAATGTAATCCCTCCCCTTACCACAAGCAAAATAGAAGACTCGTGTATTTTTTGTGTTCATTGGCAGTAAAATCCTCAAGTTCTTGGTTCCTTAAGAAATTCTTACATTTCTTCTTTTGGTTTCTATGAACTTTT

mRNA sequence

GAGGGAAGACGAGAGAAGCCGAGCAACACAGCTGAATTCTCAGTGGTGGACGTAGCTATTTCTGCAATTACTGTACCTTCGAGCCTCTTTCTTCCTTCCATCGTTGCCGTTGCAGCTGCTTGTTGGCATTCCAGCCACTGAAATCTCTCTGACGCACGTCCTGAAGATGGAGAGTGGGAAACATAATGATGAAGGAGGTGATAAGACAAAAAATGGAAAATCCAATATCTGCCAGGAATGTGGCGCTGAGTTCAGAAAACCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTTGAGAGGCCATATATATGTTCCATAGATGGTTGTGAAGCTAGTTACAGAAGAAAGGATCATTTGACTCGCCACCTTCTCCATCATCAAGGATTGATAATCAAGTGCCCTATTGAAGGTTGTAGTCGTGAATTTGCATATATATCGTGTGTAAATAGACACTTAAAAGAATGCCATGAAGGAGGTGCTCCTCCCGAAGAATGTCAGAAGCAGTTTGTTTGCCCTGAAGATGGATGCGGGAAGGTTTTCCGATATGCCTCTCAACTGCAAAAGCATGAACATTCCCATTTTAAGCTAGACTCAATAGAGGCATGTTGTGCTGAACCGGGTTGTATGAAAACATTTACCAACAAGAAATGCCTCCAGGCTCATATGCAGTCCTGCCACCAATACATAAATTGTGAGATTTGTGGGGAAAAAAAATTGAGGAAGAACATGAAGCAACATCTACGACAAAAGCATGAAAGTCAAGGTTCACCAGAGGCAATTCCTTGTACGCATGAGGGCTGCAGTAAGGTTTTTTCAACAATTTCAAATCTCCACCAACACATGAAGGTCGTGCATCTCGGTGAAAAACCATTTGCTTGCGGTTTCCCTGGTTGTGGCATGAGATTTGGCTACAAGCATGTTCGAGATAATCATGAGAAGAAGGGCCAGCATGTTTACACTAATGGGGATTTTGAAGCAGCTGATGAACAATTCCGGTCAAAGCCAAGGGGAGGGAGAAAAAGGATCCGTCCAACCGTTGAAATGCTTATAAGGAAGAGGATTACCCCCCCAAGTGAGTTGGATTTCATCATGATTGATGAGGAATGTTAAGTGTCTTGTCTGGTTTGTCTGAAGGCCTCTCTACTCGAAAGGAGCCAACCCCTTCTGTTCATTAAATGTATAGAATCTGTATTTTACAATGTAATCCCTCCCCTTACCACAAGCAAAATAGAAGACTCGTGTATTTTTTGTGTTCATTGGCAGTAAAATCCTCAAGTTCTTGGTTCCTTAAGAAATTCTTACATTTCTTCTTTTGGTTTCTATGAACTTTT

Coding sequence (CDS)

ATGGAGAGTGGGAAACATAATGATGAAGGAGGTGATAAGACAAAAAATGGAAAATCCAATATCTGCCAGGAATGTGGCGCTGAGTTCAGAAAACCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTTGAGAGGCCATATATATGTTCCATAGATGGTTGTGAAGCTAGTTACAGAAGAAAGGATCATTTGACTCGCCACCTTCTCCATCATCAAGGATTGATAATCAAGTGCCCTATTGAAGGTTGTAGTCGTGAATTTGCATATATATCGTGTGTAAATAGACACTTAAAAGAATGCCATGAAGGAGGTGCTCCTCCCGAAGAATGTCAGAAGCAGTTTGTTTGCCCTGAAGATGGATGCGGGAAGGTTTTCCGATATGCCTCTCAACTGCAAAAGCATGAACATTCCCATTTTAAGCTAGACTCAATAGAGGCATGTTGTGCTGAACCGGGTTGTATGAAAACATTTACCAACAAGAAATGCCTCCAGGCTCATATGCAGTCCTGCCACCAATACATAAATTGTGAGATTTGTGGGGAAAAAAAATTGAGGAAGAACATGAAGCAACATCTACGACAAAAGCATGAAAGTCAAGGTTCACCAGAGGCAATTCCTTGTACGCATGAGGGCTGCAGTAAGGTTTTTTCAACAATTTCAAATCTCCACCAACACATGAAGGTCGTGCATCTCGGTGAAAAACCATTTGCTTGCGGTTTCCCTGGTTGTGGCATGAGATTTGGCTACAAGCATGTTCGAGATAATCATGAGAAGAAGGGCCAGCATGTTTACACTAATGGGGATTTTGAAGCAGCTGATGAACAATTCCGGTCAAAGCCAAGGGGAGGGAGAAAAAGGATCCGTCCAACCGTTGAAATGCTTATAAGGAAGAGGATTACCCCCCCAAGTGAGTTGGATTTCATCATGATTGATGAGGAATGTTAA

Protein sequence

MESGKHNDEGGDKTKNGKSNICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRRKDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPEECQKQFVCPEDGCGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYINCEICGEKKLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFACGFPGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRGGRKRIRPTVEMLIRKRITPPSELDFIMIDEEC

Homology

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BLAST of Cp4.1LG01g09760 vs. Swiss-Prot
Match: TF3A_ARATH (Transcription factor IIIA OS=Arabidopsis thaliana GN=TFIIIA PE=1 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 3.9e-93
Identity = 175/354 (49.44%), Postives = 212/354 (59.89%), Query Frame = 1


Query: 5   KHNDEGGDKTKNGKSN-ICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRRKD 64
           + +DE  +  +   SN  CQECGAEF+KPA+LKQHMQSHSLER + C +D C ASYRRKD
Sbjct: 50  ERDDEACEVDEESSSNHTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRKD 109

Query: 65  HLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPE------ECQKQFVC 124
           HL RHLL H+G + KCP E C  EF+    V RH+K+ H      +      +  K   C
Sbjct: 110 HLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYHSNDNRDKDNTGLGDGDKDNTC 169

Query: 125 PED---------GCGKVF---------------------------------------RYA 184
             D         GC K                                         +Y 
Sbjct: 170 KGDDDKEKSGSGGCEKENEGNGGSGKDNNGNGDSQPAECSTGQKQVVCKEIGCGKAFKYP 229

Query: 185 SQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYINCEICGEKKLRKNM 244
           SQLQKH+ SH KLDS+EA C+EPGCMK FTN++CL++H++SCHQ+INCEICG K L+KN+
Sbjct: 230 SQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQHINCEICGSKHLKKNI 289

Query: 245 KQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFACGFPGCGMRFG 304
           K+HLR  H+   SP  I C  EGCS  FS  SNL +HMK VH   +PF CGFPGCGMRF 
Sbjct: 290 KRHLR-THDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFA 349

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BLAST of Cp4.1LG01g09760 vs. Swiss-Prot
Match: TF3A_RAT (Transcription factor IIIA OS=Rattus norvegicus GN=Gtf3a PE=2 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 6.9e-29
Identity = 80/264 (30.30%), Postives = 121/264 (45.83%), Query Frame = 1


Query: 24  ECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRRKDHLTRHLLHHQG-LIIKCPIE 83
           +C A + K   L  H+  H+ ERP++C  +GC  ++ R  HL+RH+L H G     C   
Sbjct: 44  DCSASYNKAWKLDAHLCKHTGERPFVCDYEGCGKAFIRDYHLSRHILIHTGEKPFVCADN 103

Query: 84  GCSREFAYISCVNRHLKECHEGGAPPEECQKQFVCPEDGCGKVFRYASQLQKHEHSHFKL 143
           GC+++F+  S + +H++  HE        QKQ+VC  +GC K F+   QL+ H+  H   
Sbjct: 104 GCNQKFSTKSNLKKHIERKHENP------QKQYVCNFEGCKKAFKKHQQLRTHQCQHTNE 163

Query: 144 DSIEACCAEPGCMKTFTN-----------------KKC---------LQAHMQSCH-QYI 203
                 C   GC K F +                 K C         L  H +  H + +
Sbjct: 164 PLFR--CTHEGCGKHFASPSRLKRHGKVHEGYLCQKGCSFVGKTWTELLKHTREAHKEEV 223

Query: 204 NCEICGEKKLRKNMKQHLRQKHESQGSPE--AIPCTHEGCSKVFSTISNLHQHMKVVHLG 258
            C +C  +K+ K  K HL+Q H    +PE     C  EGC++ ++T+ NL  H+   H  
Sbjct: 224 TCTVC--QKMFKR-KDHLKQ-HMKTHAPERDVYRCPREGCARTYTTVFNLQSHILSFHEE 283

[Close]

BLAST of Cp4.1LG01g09760 vs. Swiss-Prot
Match: TF3A_MOUSE (Transcription factor IIIA OS=Mus musculus GN=Gtf3a PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-27
Identity = 75/260 (28.85%), Postives = 119/260 (45.77%), Query Frame = 1


Query: 24  ECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRRKDHLTRHLLHHQG-LIIKCPIE 83
           +C A + K   L  H+  H+ ERP++C  +GC  ++ R  HL+RH+L H G     C  +
Sbjct: 44  DCSASYNKAWKLDAHLCKHTGERPFVCDYEGCGKAFIRDYHLSRHVLIHTGEKPFVCADD 103

Query: 84  GCSREFAYISCVNRHLKECHEGGAPPEECQKQFVCPEDGCGKVFRYASQLQKHEHSHFKL 143
           GC+++F   S + +H++  H  G P    QKQ+VC  +GC K F+   QL+ H+  H   
Sbjct: 104 GCNQKFNTKSNLKKHIERKH--GNP----QKQYVCSYEGCKKAFKKHQQLRTHQCQHTSE 163

Query: 144 DSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYI---NCEICGE------KKLRKNMKQHL 203
                 C   GC K F +   L+ H +    Y+    C   G+      K +R+  K+ +
Sbjct: 164 PLFR--CTHEGCGKHFASPSRLKRHGKVHEGYLCQKGCSFMGKTWTELLKHMREAHKEDI 223

Query: 204 R--------------QKHESQGSPE--AIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPF 258
                          ++H    +PE     C  +GC + ++T+ NL  H+   H  ++PF
Sbjct: 224 TCNVCQRMFKRRDYLKQHMKTHAPERDVYRCPRQGCGRTYTTVFNLQSHILSFHEEKRPF 283

[Close]

BLAST of Cp4.1LG01g09760 vs. Swiss-Prot
Match: TF3A_SCHPO (Transcription factor IIIA OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfc2 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.4e-27
Identity = 76/274 (27.74%), Postives = 120/274 (43.80%), Query Frame = 1


Query: 23  QECGAEFRKPAYLKQHMQSHSLERPYICSI------------------------------ 82
           +ECG ++ +P+ L+QH+++HS ERP++C                                
Sbjct: 28  EECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHY 87

Query: 83  DGCEASYRRKDHLTRHL-LHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPEEC 142
           DGC+A +  + HL RH+ +H +     C  EGC   F+    +  H+  CH    P    
Sbjct: 88  DGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLP---- 147

Query: 143 QKQFVCPEDGCGKVFRYASQLQKH-EHSHFKLDSIEACCAEPGCM--KTFTNKKCLQAHM 202
              + C    C   F    +LQ H   +H K+  I   C    C+  + F     LQ H+
Sbjct: 148 ---YPCTYQDCELRFATKQKLQNHVNRAHEKI--ISYSCPHESCVGHEGFEKWSQLQNHI 207

Query: 203 QSCHQYINCEICGEK-KLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHM 262
           +  H   +C ICG + K   +++ H+     +    +   C  EGC K F+  S L +H+
Sbjct: 208 REAH-VPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHI 267

[Close]

BLAST of Cp4.1LG01g09760 vs. Swiss-Prot
Match: TF3A_HUMAN (Transcription factor IIIA OS=Homo sapiens GN=GTF3A PE=1 SV=3)

HSP 1 Score: 117.5 bits (293), Expect = 2.7e-25
Identity = 69/241 (28.63%), Postives = 113/241 (46.89%), Query Frame = 1


Query: 25  CGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRRKDHLTRHL---LHHQGLIIKCPI 84
           CG  F +  +L +H+ +H+ E+P++C+ +GC+  +  K +L +H      +Q     C  
Sbjct: 77  CGKAFIRDYHLSRHILTHTGEKPFVCAANGCDQKFNTKSNLKKHFERKHENQQKQYICSF 136

Query: 85  EGCSREFAYISCVNRHLKECHEGGAPPEECQKQFVCPEDGCGKVFRYASQLQKHEHSHFK 144
           E C + F     +  H  +C     P       F C ++GCGK F   S+L++H  +H  
Sbjct: 137 EDCKKTFKKHQQLKIH--QCQHTNEP------LFKCTQEGCGKHFASPSKLKRHAKAH-- 196

Query: 145 LDSIEACCAEPGC---MKTFTNKKCLQAHMQSCH-QYINCEICGEKKLRKN-MKQHLRQK 204
               E    + GC    KT+T    L  H++  H + I CE+C +   RK+ +KQH++  
Sbjct: 197 ----EGYVCQKGCSFVAKTWTE---LLKHVRETHKEEILCEVCRKTFKRKDYLKQHMKTH 256

Query: 205 HESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFACGFPGCGMRFGYKHVRDN 258
              +   +   C  EGC + ++T+ NL  H+   H   +PF C   GCG  F  K     
Sbjct: 257 APER---DVCRCPREGCGRTYTTVFNLQSHILSFHEESRPFVCEHAGCGKTFAMKQSLTR 297

[Close]

BLAST of Cp4.1LG01g09760 vs. TrEMBL
Match: A0A0A0KV54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623900 PE=4 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 3.9e-164
Identity = 268/324 (82.72%), Postives = 289/324 (89.20%), Query Frame = 1


Query: 1   MESGKHNDEGGDKTKNGKSNICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYR 60
           ME GKHND+G DKTK+GK NICQ+CGA FRKPAYLKQHMQSHSLERPYICS+DGC ASYR
Sbjct: 78  MEIGKHNDDGDDKTKSGKFNICQQCGAAFRKPAYLKQHMQSHSLERPYICSVDGCNASYR 137

Query: 61  RKDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGG----------APPEE 120
           RKDHLTRHLLHHQG + KCPIE C REFAY SCV+RHLKECHEG           APPEE
Sbjct: 138 RKDHLTRHLLHHQGTMFKCPIESCCREFAYASCVSRHLKECHEGEVPPEECHEGEAPPEE 197

Query: 121 CQKQFVCPEDGCGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQS 180
           C+KQFVCPEDGCGKVFRYAS+LQKHE SH KLDSIEACC EPGC+KTFTNK+CL+AHMQ+
Sbjct: 198 CKKQFVCPEDGCGKVFRYASRLQKHEGSHVKLDSIEACCTEPGCLKTFTNKQCLRAHMQT 257

Query: 181 CHQYINCEICGEKKLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVV 240
           CHQY+ CEICGEKKLRKN+KQHLRQKHES+G  EAIPCT+EGCSKVFST SNL QHMKVV
Sbjct: 258 CHQYVKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCTYEGCSKVFSTASNLQQHMKVV 317

Query: 241 HLGEKPFACGFPGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRGGRKRIRP 300
           HL +KPF C FPGCGMRFGYKHVRDNHEK GQHVYTNGDFEAADEQFRSKPRGGRKRI P
Sbjct: 318 HLEQKPFVCCFPGCGMRFGYKHVRDNHEKSGQHVYTNGDFEAADEQFRSKPRGGRKRICP 377

Query: 301 TVEMLIRKRITPPSELDFIMIDEE 315
           TVEMLIRKR+TPPSELDF+M +E+
Sbjct: 378 TVEMLIRKRVTPPSELDFMMEEED 401

[Close]

BLAST of Cp4.1LG01g09760 vs. TrEMBL
Match: W9RZD5_9ROSA (Transcription factor IIIA OS=Morus notabilis GN=L484_025451 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 5.1e-116
Identity = 190/308 (61.69%), Postives = 239/308 (77.60%), Query Frame = 1


Query: 2   ESGKHNDEGGDKTKNGKSNICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRR 61
           E  K  + G  K    ++N C++CGA F+KPAYLKQHM+SHS ER Y+C +D C   Y R
Sbjct: 43  EMEKRAETGETKEGVKQTNTCEKCGASFKKPAYLKQHMRSHSDERQYVCPVDDCPCCYIR 102

Query: 62  KDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPEECQKQFVCPEDG 121
           KDHLTRHLL H+G + KCPI+ C  EFA+   V RH+ E H+   P +EC+KQ+VCPE G
Sbjct: 103 KDHLTRHLLRHKGKLFKCPIQNCKSEFAFQGNVKRHVVEQHDEDHPSDECEKQYVCPEVG 162

Query: 122 CGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYINCEICG 181
           CGKVF++AS+L+KHE SH KL+++E  CAEPGC+KTFTN +CL+AH+QSCH++  CEICG
Sbjct: 163 CGKVFKFASKLRKHEDSHVKLNTVETICAEPGCIKTFTNVQCLKAHIQSCHRHFTCEICG 222

Query: 182 EKKLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFACGF 241
            K+L+KN+K+HLR  HE + SPE+I C  +GC   FST SNL+QH+K  HL +KPFACGF
Sbjct: 223 TKQLKKNIKRHLR-THEEKVSPESIKCNFKGCDHTFSTKSNLNQHVKAAHLKQKPFACGF 282

Query: 242 PGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRGGRKRIRPTVEMLIRKRIT 301
            GCGMRF YKHVRDNHEK G+HVYT+GDFE +DEQFRS+PRGGRKR  P VEML+RKR+T
Sbjct: 283 AGCGMRFAYKHVRDNHEKTGRHVYTHGDFEESDEQFRSRPRGGRKRKYPNVEMLVRKRVT 342

Query: 302 PPSELDFI 310
           PP++ D I
Sbjct: 343 PPNQSDAI 349

[Close]

BLAST of Cp4.1LG01g09760 vs. TrEMBL
Match: U5FVV9_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0013s11300g PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 5.3e-113
Identity = 193/302 (63.91%), Postives = 227/302 (75.17%), Query Frame = 1


Query: 11  GDKTKNG-KSNICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRRKDHLTRHL 70
           GD+ K G KSN C+ CGA F+KPAYL QHMQSHSLERP+ C  D C ASYRRKDHLTRHL
Sbjct: 57  GDEGKEGVKSNTCENCGASFKKPAYLIQHMQSHSLERPFKCLFDDCHASYRRKDHLTRHL 116

Query: 71  LHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPEEC----QKQFVCPEDGCGKV 130
           L H+G + KC IE C+REF Y S + RH++E H+   P   C    +KQ+VC E GCGK 
Sbjct: 117 LQHEGKLFKCQIENCNREFVYPSNLKRHVRELHDESFP--SCSFGGEKQYVCQEPGCGKA 176

Query: 131 FRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYINCEICGEKKL 190
           FRY S+L+KHE SH  LD +EA C EPGCMK F+NK+CL+AH+QS HQYINC+ICG K+L
Sbjct: 177 FRYPSKLRKHEDSHVSLDHVEAMCLEPGCMKHFSNKECLKAHIQSSHQYINCDICGTKQL 236

Query: 191 RKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFACGFPGCG 250
           +KN+K+HLR    +  S E I C   GC   FST +NL+QH+K VHL  +PF CGFPGC 
Sbjct: 237 KKNIKRHLRTHEPASDSTERIKCHFNGCQHTFSTKTNLNQHVKAVHLEHRPFLCGFPGCD 296

Query: 251 MRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRGGRKRIRPTVEMLIRKRITPPSE 308
           MRF YKHVRDNHEK G HVYT GDF  +D QFRSKPRGGRKR  PTVEMLIRKR+TPP++
Sbjct: 297 MRFSYKHVRDNHEKSGLHVYTPGDFVESDRQFRSKPRGGRKRKFPTVEMLIRKRVTPPTK 356

[Close]

BLAST of Cp4.1LG01g09760 vs. TrEMBL
Match: M5VPP5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006700mg PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 1.3e-111
Identity = 191/308 (62.01%), Postives = 233/308 (75.65%), Query Frame = 1


Query: 1   MESGKHNDEGGDKTKNGKSNICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYR 60
           ME  K  D  G++ +  KSN CQECGA F+KPAYLKQHMQSHSLERPY+C +D C +S+R
Sbjct: 46  MEMAKEAD--GERERE-KSNTCQECGATFKKPAYLKQHMQSHSLERPYVCLVDDCRSSFR 105

Query: 61  RKDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPEEC--QKQFVCP 120
           RKDHL RHLL HQG + KCPIE C+R F     + RH++E H    P      QKQ VC 
Sbjct: 106 RKDHLNRHLLQHQGKLFKCPIENCNRGFVSQGNMRRHVRELHNEDDPLANVGGQKQHVCQ 165

Query: 121 EDGCGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYINCE 180
           +  CGKVF++AS+LQKHE+SH KLDS+EA C+EPGCMK F+N+KCL+AH+QSCHQ+I CE
Sbjct: 166 D--CGKVFKFASKLQKHENSHVKLDSVEAFCSEPGCMKYFSNQKCLKAHIQSCHQHITCE 225

Query: 181 ICGEKKLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFA 240
           ICG KKL++N+++HL      + S E I C+++GC   FST SNLHQH+K VHL  KPF 
Sbjct: 226 ICGTKKLKRNIERHLCTHEGGRASVERIKCSYKGCLHTFSTKSNLHQHVKAVHLEHKPFV 285

Query: 241 CGFPGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRGGRKRIRPTVEMLIRK 300
           C F GCG+RF YKHVRD HEK G+HVY  GDFE ADEQFRS+PRGGRKR  PT+EML+RK
Sbjct: 286 CSFSGCGVRFAYKHVRDKHEKTGRHVYAYGDFEEADEQFRSRPRGGRKRKYPTIEMLVRK 345

Query: 301 RITPPSEL 307
           R+TPP +L
Sbjct: 346 RVTPPDQL 348

[Close]

BLAST of Cp4.1LG01g09760 vs. TrEMBL
Match: D7TQ66_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00240 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 3.8e-111
Identity = 195/332 (58.73%), Postives = 240/332 (72.29%), Query Frame = 1


Query: 1   MESGK-HNDEGGDKTKNGKSNICQECGAEFRKPAYLKQHMQSHSLE-------------- 60
           ME  K HN+E   + +  KSN C+ECGA F+KPAYLKQHMQSHSLE              
Sbjct: 45  MEGQKVHNNE---EKEGEKSNACEECGASFKKPAYLKQHMQSHSLEALNFFGSSIKRPQS 104

Query: 61  ------RPYICSIDGCEASYRRKDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLK 120
                 RP+ C +D C++SYRRKDHLTRHLL HQG +  CP+E C R FA+   + RH+K
Sbjct: 105 RTTCFERPFTCPVDDCQSSYRRKDHLTRHLLQHQGKLFTCPVENCKRRFAFQGNMKRHIK 164

Query: 121 ECHEGGAPPEEC-QKQFVCPEDGCGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTF 180
           E H+  +PP +   KQ+VCPE GCGKVF++AS+LQKHE SH KLDS+EA C EP C+K F
Sbjct: 165 EFHDEESPPNDVGSKQYVCPELGCGKVFKFASKLQKHEDSHAKLDSVEAVCLEPECLKHF 224

Query: 181 TNKKCLQAHMQSCHQYINCEICGEKKLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFS 240
           TN++CL+AH+QSCHQ+I CEICG K+L+KN+K+HLR  HES  S E + C  +GC   FS
Sbjct: 225 TNEQCLKAHLQSCHQHIICEICGTKQLKKNIKRHLRT-HESVCSSERVKCHFKGCLHTFS 284

Query: 241 TISNLHQHMKVVHLGEKPFACGFPGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFR 300
           T SNL QH+K VHL  +PF CG PGCGMRF +KHVRDNHEK G HVYT+GDFE  DEQFR
Sbjct: 285 TKSNLDQHVKAVHLKLRPFVCGIPGCGMRFPFKHVRDNHEKTGCHVYTHGDFEELDEQFR 344

Query: 301 SKPRGGRKRIRPTVEMLIRKRITPPSELDFIM 311
            +P+GGRKR  P +E L+RKR+TPPS+ D I+
Sbjct: 345 LRPKGGRKRKSPPIEALLRKRVTPPSQSDSIL 372

[Close]

BLAST of Cp4.1LG01g09760 vs. TAIR10
Match: AT1G72050.2 (AT1G72050.2 transcription factor IIIA)

HSP 1 Score: 342.8 bits (878), Expect = 2.2e-94
Identity = 175/354 (49.44%), Postives = 212/354 (59.89%), Query Frame = 1


Query: 5   KHNDEGGDKTKNGKSN-ICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRRKD 64
           + +DE  +  +   SN  CQECGAEF+KPA+LKQHMQSHSLER + C +D C ASYRRKD
Sbjct: 50  ERDDEACEVDEESSSNHTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRKD 109

Query: 65  HLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPE------ECQKQFVC 124
           HL RHLL H+G + KCP E C  EF+    V RH+K+ H      +      +  K   C
Sbjct: 110 HLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYHSNDNRDKDNTGLGDGDKDNTC 169

Query: 125 PED---------GCGKVF---------------------------------------RYA 184
             D         GC K                                         +Y 
Sbjct: 170 KGDDDKEKSGSGGCEKENEGNGGSGKDNNGNGDSQPAECSTGQKQVVCKEIGCGKAFKYP 229

Query: 185 SQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYINCEICGEKKLRKNM 244
           SQLQKH+ SH KLDS+EA C+EPGCMK FTN++CL++H++SCHQ+INCEICG K L+KN+
Sbjct: 230 SQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRSCHQHINCEICGSKHLKKNI 289

Query: 245 KQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFACGFPGCGMRFG 304
           K+HLR  H+   SP  I C  EGCS  FS  SNL +HMK VH   +PF CGFPGCGMRF 
Sbjct: 290 KRHLR-THDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFA 349

[Close]

BLAST of Cp4.1LG01g09760 vs. TAIR10
Match: AT4G06634.1 (AT4G06634.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-11
Identity = 50/192 (26.04%), Postives = 83/192 (43.23%), Query Frame = 1


Query: 75  LIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPEECQKQFVCPEDGCGKVFRYASQLQK 134
           ++  C  +GC + F  +S + +H    H  G      ++Q+VC ++GCGK F  +S+L++
Sbjct: 77  ILFLCSYDGCGKTFFDVSALRKH---SHIHG------ERQYVCDQEGCGKKFLDSSKLKR 136

Query: 135 HEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYINCEICGEKKLRK------N 194
           H   H         C   GC K F+    L++HM++ H   N  IC      K       
Sbjct: 137 HYLIH--TGERNYICTYEGCGKAFSLDFNLRSHMKT-HSQENYHICPYSGCVKRYAHEYK 196

Query: 195 MKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFACGFPGCGMRF 254
           +K H+   HE  G  E  P       KV  T+             ++P+AC + GC   +
Sbjct: 197 LKNHVAAYHEKNGGGET-PKYTPPAEKVLRTVKT--PATVCGPSSDRPYACPYEGCEKAY 253

Query: 255 GYKHVRDNHEKK 261
            +++    H K+
Sbjct: 257 IHEYKLKLHLKR 253

[Close]

BLAST of Cp4.1LG01g09760 vs. TAIR10
Match: AT3G48430.1 (AT3G48430.1 relative of early flowering 6)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-07
Identity = 28/86 (32.56%), Postives = 42/86 (48.84%), Query Frame = 1


Query: 18   KSNIC--QECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRRKDHLTRHLLHHQGL 77
            K NIC  + CG  F    YL QH + HS +RP  C   GC+ +++     T H+  H G 
Sbjct: 1264 KRNICPIKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGA 1323

Query: 78   -IIKCPIEGCSREFAYISCVNRHLKE 101
                C    C + F ++S  +RH ++
Sbjct: 1324 RPYVCAEPDCGQTFRFVSDFSRHKRK 1349

[Close]

BLAST of Cp4.1LG01g09760 vs. TAIR10
Match: AT5G04240.1 (AT5G04240.1 Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein)

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-06
Identity = 22/50 (44.00%), Postives = 27/50 (54.00%), Query Frame = 1


Query: 208  CTHEGCSKVFSTISNLHQHMKVVHLGEKPFACGFPGCGMRFGYKHVRDNH 258
            CTHEGC K F     L  H + VH  E+PF C + GC M F ++  R  H
Sbjct: 1253 CTHEGCGKKFRAHKYLVLHQR-VHKDERPFECSWKGCSMTFKWQWARTEH 1301

[Close]

BLAST of Cp4.1LG01g09760 vs. NCBI nr
Match: gi|659092237|ref|XP_008446968.1| (PREDICTED: transcription factor IIIA isoform X1 [Cucumis melo])

HSP 1 Score: 587.4 bits (1513), Expect = 1.5e-164
Identity = 266/310 (85.81%), Postives = 283/310 (91.29%), Query Frame = 1


Query: 1   MESGKHNDEGGDKTKNGKSNICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYR 60
           ME  KHNDEG DKTK GK NICQ+CGA FRKPAYLKQHMQSHSLER Y+CSIDGC ASYR
Sbjct: 1   MEIDKHNDEGDDKTKYGKLNICQQCGAAFRKPAYLKQHMQSHSLERSYVCSIDGCNASYR 60

Query: 61  RKDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPEECQKQFVCPED 120
           RKDHLTRHLLHHQG + KCPIE C REFAY+SCV RHLKECHEG APPEECQKQFVCPED
Sbjct: 61  RKDHLTRHLLHHQGTMFKCPIESCCREFAYLSCVTRHLKECHEGEAPPEECQKQFVCPED 120

Query: 121 GCGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYINCEIC 180
           GCGKVFRYAS+LQKHE SH KLDSIEACC EPGC+KTFTNK+CL+AHMQ+CHQY+ CEIC
Sbjct: 121 GCGKVFRYASRLQKHEGSHVKLDSIEACCTEPGCLKTFTNKQCLRAHMQTCHQYVKCEIC 180

Query: 181 GEKKLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFACG 240
           GEKKLRKN+KQHLRQKHES+G  EAIPCT+EGCSKVFST SNL QH KVVHLG+KPFAC 
Sbjct: 181 GEKKLRKNLKQHLRQKHESEGPLEAIPCTYEGCSKVFSTASNLQQHTKVVHLGQKPFACC 240

Query: 241 FPGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRGGRKRIRPTVEMLIRKRI 300
           FPGCGMRFGYKHVRDNHEK G HVYTNGDFEAADEQFRSKPRGGRKRI PTVEMLIRKR+
Sbjct: 241 FPGCGMRFGYKHVRDNHEKSGHHVYTNGDFEAADEQFRSKPRGGRKRICPTVEMLIRKRV 300

Query: 301 TPPSELDFIM 311
           TPPS+LDF+M
Sbjct: 301 TPPSDLDFMM 310

[Close]

BLAST of Cp4.1LG01g09760 vs. NCBI nr
Match: gi|778706856|ref|XP_004142387.2| (PREDICTED: zinc finger X-linked protein ZXDB [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 5.6e-164
Identity = 268/324 (82.72%), Postives = 289/324 (89.20%), Query Frame = 1


Query: 1   MESGKHNDEGGDKTKNGKSNICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYR 60
           ME GKHND+G DKTK+GK NICQ+CGA FRKPAYLKQHMQSHSLERPYICS+DGC ASYR
Sbjct: 1   MEIGKHNDDGDDKTKSGKFNICQQCGAAFRKPAYLKQHMQSHSLERPYICSVDGCNASYR 60

Query: 61  RKDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGG----------APPEE 120
           RKDHLTRHLLHHQG + KCPIE C REFAY SCV+RHLKECHEG           APPEE
Sbjct: 61  RKDHLTRHLLHHQGTMFKCPIESCCREFAYASCVSRHLKECHEGEVPPEECHEGEAPPEE 120

Query: 121 CQKQFVCPEDGCGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQS 180
           C+KQFVCPEDGCGKVFRYAS+LQKHE SH KLDSIEACC EPGC+KTFTNK+CL+AHMQ+
Sbjct: 121 CKKQFVCPEDGCGKVFRYASRLQKHEGSHVKLDSIEACCTEPGCLKTFTNKQCLRAHMQT 180

Query: 181 CHQYINCEICGEKKLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVV 240
           CHQY+ CEICGEKKLRKN+KQHLRQKHES+G  EAIPCT+EGCSKVFST SNL QHMKVV
Sbjct: 181 CHQYVKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCTYEGCSKVFSTASNLQQHMKVV 240

Query: 241 HLGEKPFACGFPGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRGGRKRIRP 300
           HL +KPF C FPGCGMRFGYKHVRDNHEK GQHVYTNGDFEAADEQFRSKPRGGRKRI P
Sbjct: 241 HLEQKPFVCCFPGCGMRFGYKHVRDNHEKSGQHVYTNGDFEAADEQFRSKPRGGRKRICP 300

Query: 301 TVEMLIRKRITPPSELDFIMIDEE 315
           TVEMLIRKR+TPPSELDF+M +E+
Sbjct: 301 TVEMLIRKRVTPPSELDFMMEEED 324

[Close]

BLAST of Cp4.1LG01g09760 vs. NCBI nr
Match: gi|700197150|gb|KGN52327.1| (hypothetical protein Csa_5G623900 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 5.6e-164
Identity = 268/324 (82.72%), Postives = 289/324 (89.20%), Query Frame = 1


Query: 1   MESGKHNDEGGDKTKNGKSNICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYR 60
           ME GKHND+G DKTK+GK NICQ+CGA FRKPAYLKQHMQSHSLERPYICS+DGC ASYR
Sbjct: 78  MEIGKHNDDGDDKTKSGKFNICQQCGAAFRKPAYLKQHMQSHSLERPYICSVDGCNASYR 137

Query: 61  RKDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGG----------APPEE 120
           RKDHLTRHLLHHQG + KCPIE C REFAY SCV+RHLKECHEG           APPEE
Sbjct: 138 RKDHLTRHLLHHQGTMFKCPIESCCREFAYASCVSRHLKECHEGEVPPEECHEGEAPPEE 197

Query: 121 CQKQFVCPEDGCGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQS 180
           C+KQFVCPEDGCGKVFRYAS+LQKHE SH KLDSIEACC EPGC+KTFTNK+CL+AHMQ+
Sbjct: 198 CKKQFVCPEDGCGKVFRYASRLQKHEGSHVKLDSIEACCTEPGCLKTFTNKQCLRAHMQT 257

Query: 181 CHQYINCEICGEKKLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVV 240
           CHQY+ CEICGEKKLRKN+KQHLRQKHES+G  EAIPCT+EGCSKVFST SNL QHMKVV
Sbjct: 258 CHQYVKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCTYEGCSKVFSTASNLQQHMKVV 317

Query: 241 HLGEKPFACGFPGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRGGRKRIRP 300
           HL +KPF C FPGCGMRFGYKHVRDNHEK GQHVYTNGDFEAADEQFRSKPRGGRKRI P
Sbjct: 318 HLEQKPFVCCFPGCGMRFGYKHVRDNHEKSGQHVYTNGDFEAADEQFRSKPRGGRKRICP 377

Query: 301 TVEMLIRKRITPPSELDFIMIDEE 315
           TVEMLIRKR+TPPSELDF+M +E+
Sbjct: 378 TVEMLIRKRVTPPSELDFMMEEED 401

[Close]

BLAST of Cp4.1LG01g09760 vs. NCBI nr
Match: gi|659092239|ref|XP_008446969.1| (PREDICTED: transcription factor IIIA isoform X2 [Cucumis melo])

HSP 1 Score: 512.3 bits (1318), Expect = 6.0e-142
Identity = 228/267 (85.39%), Postives = 246/267 (92.13%), Query Frame = 1


Query: 44  LERPYICSIDGCEASYRRKDHLTRHLLHHQGLIIKCPIEGCSREFAYISCVNRHLKECHE 103
           ++R Y+CSIDGC ASYRRKDHLTRHLLHHQG + KCPIE C REFAY+SCV RHLKECHE
Sbjct: 22  MQRSYVCSIDGCNASYRRKDHLTRHLLHHQGTMFKCPIESCCREFAYLSCVTRHLKECHE 81

Query: 104 GGAPPEECQKQFVCPEDGCGKVFRYASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKC 163
           G APPEECQKQFVCPEDGCGKVFRYAS+LQKHE SH KLDSIEACC EPGC+KTFTNK+C
Sbjct: 82  GEAPPEECQKQFVCPEDGCGKVFRYASRLQKHEGSHVKLDSIEACCTEPGCLKTFTNKQC 141

Query: 164 LQAHMQSCHQYINCEICGEKKLRKNMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNL 223
           L+AHMQ+CHQY+ CEICGEKKLRKN+KQHLRQKHES+G  EAIPCT+EGCSKVFST SNL
Sbjct: 142 LRAHMQTCHQYVKCEICGEKKLRKNLKQHLRQKHESEGPLEAIPCTYEGCSKVFSTASNL 201

Query: 224 HQHMKVVHLGEKPFACGFPGCGMRFGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRG 283
            QH KVVHLG+KPFAC FPGCGMRFGYKHVRDNHEK G HVYTNGDFEAADEQFRSKPRG
Sbjct: 202 QQHTKVVHLGQKPFACCFPGCGMRFGYKHVRDNHEKSGHHVYTNGDFEAADEQFRSKPRG 261

Query: 284 GRKRIRPTVEMLIRKRITPPSELDFIM 311
           GRKRI PTVEMLIRKR+TPPS+LDF+M
Sbjct: 262 GRKRICPTVEMLIRKRVTPPSDLDFMM 288

[Close]

BLAST of Cp4.1LG01g09760 vs. NCBI nr
Match: gi|743919922|ref|XP_011003995.1| (PREDICTED: transcription factor IIIA [Populus euphratica])

HSP 1 Score: 426.4 bits (1095), Expect = 4.3e-116
Identity = 193/300 (64.33%), Postives = 231/300 (77.00%), Query Frame = 1


Query: 11  GDKTKNG-KSNICQECGAEFRKPAYLKQHMQSHSLERPYICSIDGCEASYRRKDHLTRHL 70
           GD+ K G KSN C++CGA F+KPAYL QHMQSHSLERP++CS+D C ASYRRKDHLTRHL
Sbjct: 57  GDEVKEGVKSNTCEKCGASFKKPAYLVQHMQSHSLERPFMCSVDDCHASYRRKDHLTRHL 116

Query: 71  LHHQGLIIKCPIEGCSREFAYISCVNRHLKECHEGGAPPEEC--QKQFVCPEDGCGKVFR 130
           LHH+G + KC I  C  +F Y S + RH++E H+  +P +    +KQ+ C E GCGK FR
Sbjct: 117 LHHEGKLFKCEIGNCDHKFVYPSNLKRHVRELHDESSPSDRVGGEKQYACQEPGCGKAFR 176

Query: 131 YASQLQKHEHSHFKLDSIEACCAEPGCMKTFTNKKCLQAHMQSCHQYINCEICGEKKLRK 190
           Y S+L+KHE SH  LDSIEA C EP CMK F+NKKCL+AH+Q CHQYINC+ICG K+LRK
Sbjct: 177 YPSKLRKHEDSHVNLDSIEAMCIEPDCMKHFSNKKCLKAHVQFCHQYINCDICGTKQLRK 236

Query: 191 NMKQHLRQKHESQGSPEAIPCTHEGCSKVFSTISNLHQHMKVVHLGEKPFACGFPGCGMR 250
           N+K+HLR      GS E I C  +GC   FST +NL+QH+K VHL ++PF CGFPGC MR
Sbjct: 237 NIKRHLRTHEPVSGSTERIKCHCKGCQHTFSTKTNLNQHVKAVHLEQRPFVCGFPGCDMR 296

Query: 251 FGYKHVRDNHEKKGQHVYTNGDFEAADEQFRSKPRGGRKRIRPTVEMLIRKRITPPSELD 308
           F YKHVRDNHEK G HVYT GDF  +D+QFRS+PRGGRKR  PTVEMLIRKR+TPP+E D
Sbjct: 297 FSYKHVRDNHEKSGLHVYTPGDFVESDQQFRSRPRGGRKRKFPTVEMLIRKRVTPPTEFD 356

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g09760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF3A_ARATH	3.9e-93	49.44	Transcription factor IIIA OS=Arabidopsis thaliana GN=TFIIIA PE=1 SV=1	[more]
TF3A_RAT	6.9e-29	30.30	Transcription factor IIIA OS=Rattus norvegicus GN=Gtf3a PE=2 SV=2	[more]
TF3A_MOUSE	1.7e-27	28.85	Transcription factor IIIA OS=Mus musculus GN=Gtf3a PE=2 SV=2	[more]
TF3A_SCHPO	8.4e-27	27.74	Transcription factor IIIA OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)...	[more]
TF3A_HUMAN	2.7e-25	28.63	Transcription factor IIIA OS=Homo sapiens GN=GTF3A PE=1 SV=3	[more]

BLAST of Cp4.1LG01g09760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV54_CUCSA	3.9e-164	82.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623900 PE=4 SV=1	[more]
W9RZD5_9ROSA	5.1e-116	61.69	Transcription factor IIIA OS=Morus notabilis GN=L484_025451 PE=4 SV=1	[more]
U5FVV9_POPTR	5.3e-113	63.91	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0013s11300g PE=4 SV=1	[more]
M5VPP5_PRUPE	1.3e-111	62.01	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006700mg PE=4 SV=1	[more]
D7TQ66_VITVI	3.8e-111	58.73	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00240 PE=4 SV=...	[more]

BLAST of Cp4.1LG01g09760 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72050.2	2.2e-94	49.44	transcription factor IIIA	[more]
AT4G06634.1	1.4e-11	26.04	zinc finger (C2H2 type) family protein	[more]
AT3G48430.1	3.5e-07	32.56	relative of early flowering 6	[more]
AT5G04240.1	2.3e-06	44.00	Zinc finger (C2H2 type) family protein / transcription factor jumonj...	[more]

BLAST of Cp4.1LG01g09760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092237\|ref\|XP_008446968.1\|	1.5e-164	85.81	PREDICTED: transcription factor IIIA isoform X1 [Cucumis melo]	[more]
gi\|778706856\|ref\|XP_004142387.2\|	5.6e-164	82.72	PREDICTED: zinc finger X-linked protein ZXDB [Cucumis sativus]	[more]
gi\|700197150\|gb\|KGN52327.1\|	5.6e-164	82.72	hypothetical protein Csa_5G623900 [Cucumis sativus]	[more]
gi\|659092239\|ref\|XP_008446969.1\|	6.0e-142	85.39	PREDICTED: transcription factor IIIA isoform X2 [Cucumis melo]	[more]
gi\|743919922\|ref\|XP_011003995.1\|	4.3e-116	64.33	PREDICTED: transcription factor IIIA [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR015880	Zinc finger, C2H2-like
IPR013087	Znf_C2H2_type
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g09760.1	Cp4.1LG01g09760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 50..72 score: -coord: 149..172 score: -coord: 79..102 score: -coord: 22..42 score: -coord: 239..263 score: -coord: 117..139 score: -coord: 208..231 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 20..47 score: 12.944coord: 115..144 score: 10.99coord: 77..107 score: 10.118coord: 206..236 score: 13.858coord: 48..74 score: 9
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain	GENE3D	G3DSA:3.30.160.60		coord: 208..233 score: 3.0E-8coord: 21..41 score: 3.0E-7coord: 110..139 score: 1.2E-8coord: 234..258 score: 3.5E-6coord: 42..74 score: 2.7
IPR015880	Zinc finger, C2H2-like	SMART	SM00355	c2h2final6	coord: 175..197 score: 9.9coord: 77..102 score: 0.097coord: 48..72 score: 0.0079coord: 115..139 score: 2.3E-4coord: 147..172 score: 1.4coord: 20..42 score: 0.015coord: 237..263 score: 7.7coord: 206..231 score: 0.
None	No IPR available	PANTHER	PTHR24375	FAMILY NOT NAMED	coord: 18..312 score: 1.1
None	No IPR available	PANTHER	PTHR24375:SF106	TRANSCRIPTION FACTOR IIIA	coord: 18..312 score: 1.1
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 34..74 score: 7.15E-11coord: 112..141 score: 8.87E-6coord: 193..244 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g09760	Cucsa.307870	Cucumber (Gy14) v1	cgycpeB0806
Cp4.1LG01g09760	CmaCh18G008510	Cucurbita maxima (Rimu)	cmacpeB429
Cp4.1LG01g09760	CmoCh18G008590	Cucurbita moschata (Rifu)	cmocpeB392
Cp4.1LG01g09760	Cla009929	Watermelon (97103) v1	cpewmB435
Cp4.1LG01g09760	Csa5G623900	Cucumber (Chinese Long) v2	cpecuB439
Cp4.1LG01g09760	MELO3C012480	Melon (DHL92) v3.5.1	cpemeB363
Cp4.1LG01g09760	ClCG05G026900	Watermelon (Charleston Gray)	cpewcgB396
Cp4.1LG01g09760	CSPI05G27690	Wild cucumber (PI 183967)	cpecpiB439
Cp4.1LG01g09760	Lsi04G000200	Bottle gourd (USVL1VR-Ls)	cpelsiB352
Cp4.1LG01g09760	MELO3C012480.2	Melon (DHL92) v3.6.1	cpemedB423
Cp4.1LG01g09760	CsaV3_5G036840	Cucumber (Chinese Long) v3	cpecucB0543
Cp4.1LG01g09760	Bhi07G001020	Wax gourd	cpewgoB0556
Cp4.1LG01g09760	Carg14411	Silver-seed gourd	carcpeB1021
Cp4.1LG01g09760	Carg01999	Silver-seed gourd	carcpeB1177

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g09760	Cp4.1LG09g04560	Cucurbita pepo (Zucchini)	cpecpeB040

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g09760	Cucurbita pepo (Zucchini)	cpecpeB036
Cp4.1LG01g09760	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g09760	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g09760	Cucumber (Gy14) v2	cgybcpeB648