Cp4.1LG01g08810 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g08810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	3-hydroxyacyl-CoA dehydratase PASTICCINO 2
Location	Cp4.1LG01 : 4651520 .. 4653108 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGATGGGCTTCTGATTTTTAGGAATTATGTACATTGTTAACTCAGTTTTTATTGTTAAGTTTGCCGACCATTGTATATTCTGTGAGATGATAATTTATTAGATCATCACTTCCTCATTCAAATTAGTAGATCTAGACTGAGTTTGACATGATTCGTAGAATTGTGAAAATTTGGTTACTTAATTCTTGCATGTTTAGGAGTGACTTTGAAATGGTCAAAAATCACTTCTTAGTGATTTTGCCATTCCAAACTTACTCTCAAACATGCTTGAGGAGTTTTGAAATGGTTAGGATTACTTTCATCATGTTCGAACCTACTCCAGAACATGCTTTAATCATTCATTCCAAATCAACTTAATGTTTGATTTTACAATTTTCATACCGTACAAATTGATTTTGAGTAATTAAAAACATGTTTCAGAGTTATTTTAAATGCGGCAAAAGTGATTTTATCTACCTCAAAGTGTTCTTTTTGAAGTAGTTATAGAAAGAGTTAGATACTTAGAAATTCATTACAAACCAGTCCTAAGTTATGGAAAAAAGTTCCAAAATCTATCTATCAAGGCATACAGTTTTCAAAATGTACCATGGAGACGTATAAACAATTACTGACTTTATGTTGATATGCAATCTCTTGTGGATAAGTTCTATGTCTGGTTTCTTCGTCTTACCAATCTTTGATTGCAGATTATCCGGTATTCATTTTATGGCATGAAGGAGGCGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTACTGGCTCCTTATGTAGTGGAGTGGAGTACAATTGGTCGGTGTTCTCTGCATCTGTGATATTAAAACTGTTCTCAATCATATCATGTAGGTATAGCACATTCCTCTTGCTGTATGTAACAGGCATCACTAGTGAAGTTGGTTTAGTCTATCTGGCTCTTCCTTACATGAAGGTAAGAAATCCAATGTCATGTTGTACACATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGCGTCGAAGTATACGTCGTTCCATTAGGAAGTTTGTCGTCATTTCAAATTGCAGTGAATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTATGTTTTTGTATTTGCTCCTTTTGGTAATACAGAAACTGTGTCCTGCAGGAAGTCCACACATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATACATTTGTCTACCGAAACTCTTAATCAACTCTTAATCTAACTCCAATTAAGCTAATATGATTGATTTAATTATAATATTTAGATTAGTTAGATAA

mRNA sequence

TGTGATGGGCTTCTGATTTTTAGGAATTATGTACATTGTTAACTCAGTTTTTATTGTTAAGTTTGCCGACCATTGTATATTCTGTGAGATGATAATTTATTAGATCATCACTTCCTCATTCAAATTAGTAGATCTAGACTGAGTTTGACATGATTCGTAGAATTGTGAAAATTTGGTTACTTAATTCTTGCATGTTTAGGAGTGACTTTGAAATGGTCAAAAATCACTTCTTAGTGATTTTGCCATTCCAAACTTACTCTCAAACATGCTTGAGGAGTTTTGAAATGGTTAGGATTACTTTCATCATGTTCGAACCTACTCCAGAACATGCTTTAATCATTCATTCCAAATCAACTTAATGTTTGATTTTACAATTTTCATACCGTACAAATTGATTTTGAGTAATTAAAAACATGTTTCAGAGTTATTTTAAATGCGGCAAAAGTGATTTTATCTACCTCAAAGTGTTCTTTTTGAAGTAGTTATAGAAAGAGTTAGATACTTAGAAATTCATTACAAACCAGTCCTAAGTTATGGAAAAAAGTTCCAAAATCTATCTATCAAGGCATACAGTTTTCAAAATGTACCATGGAGACGTATAAACAATTACTGACTTTATGTTGATATGCAATCTCTTGTGGATAAGTTCTATGTCTGGTTTCTTCGTCTTACCAATCTTTGATTGCAGATTATCCGGTATTCATTTTATGGCATGAAGGAGGCGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTATAGCACATTCCTCTTGCTGTATGTAACAGGCATCACTAGTGAAGTTGGTTTAGTCTATCTGGCTCTTCCTTACATGAAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACACATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATACATTTGTCTACCGAAACTCTTAATCAACTCTTAATCTAACTCCAATTAAGCTAATATGATTGATTTAATTATAATATTTAGATTAGTTAGATAA

Coding sequence (CDS)

ATGAAGGAGGCGTTTGGTTTTGCACCTTCATTGCTCCTATGGCTAAGGTATAGCACATTCCTCTTGCTGTATGTAACAGGCATCACTAGTGAAGTTGGTTTAGTCTATCTGGCTCTTCCTTACATGAAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACACATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAG

Protein sequence

MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

Homology

[Close]

BLAST of Cp4.1LG01g08810 vs. Swiss-Prot
Match: HACDA_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-37
Identity = 73/96 (76.04%), Postives = 84/96 (87.50%), Query Frame = 1


Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPS LLWLRYSTF++LY TGI+SEVGL+Y+ALPYMK S KY  RMPNKWNFSF
Sbjct: 124 MKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKASEKYCLRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 97
           D+ Y ++L LAIYVPGSPHM+ YML QR KAL+K+K
Sbjct: 184 DFFYASILSLAIYVPGSPHMFTYMLAQRKKALAKAK 219

[Close]

BLAST of Cp4.1LG01g08810 vs. Swiss-Prot
Match: HACDB_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.0e-36
Identity = 70/96 (72.92%), Postives = 83/96 (86.46%), Query Frame = 1


Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKE FGFAPS LLWLRYSTF++LY TGI+SEVGL+Y+ALPYMK + KY  RMPNKWNFSF
Sbjct: 124 MKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 97
           D+ Y ++L LA+YVPGSPHM+ YML QR KAL+K+K
Sbjct: 184 DFSYASILSLAVYVPGSPHMFTYMLAQRKKALAKAK 219

[Close]

BLAST of Cp4.1LG01g08810 vs. Swiss-Prot
Match: HACD_ARATH (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.9e-35
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 1


Query: 2   KEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFD 61
           KEA GFAPS  LWLRYS+FLLLY TGITSEVGL+YLALP++K S  YS RMPN  NFSFD
Sbjct: 125 KEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFD 184

Query: 62  YLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           + Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 185 FFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 221

[Close]

BLAST of Cp4.1LG01g08810 vs. Swiss-Prot
Match: HACD1_MOUSE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus GN=Hacd1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-17
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 9   PSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFDYLYGAML 68
           P  + W RY+ F++LY  G+  E+  +Y ALPY+K+SG +S R+PNK+N SFDY Y  ++
Sbjct: 188 PHFIKWARYNLFIILYPVGVAGELLTIYAALPYVKKSGMFSVRLPNKYNVSFDYYYFLLI 247

Query: 69  ILAIYVPGSPHMYRYMLVQRSKAL 93
            +A Y+P  P +Y +ML QR K L
Sbjct: 248 TMASYIPLFPQLYFHMLRQRRKVL 271

[Close]

BLAST of Cp4.1LG01g08810 vs. Swiss-Prot
Match: HACD1_CANLF (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris GN=HACD1 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-16
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 9   PSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFDYLYGAML 68
           P  + W RY+ F++LY  G+  E+  +Y ALPY+K++G +S R+PNK+N SFDY Y  ++
Sbjct: 156 PYFIKWARYNFFIILYPVGVVGELLTIYAALPYVKKTGMFSIRLPNKYNVSFDYYYFLLI 215

Query: 69  ILAIYVPGSPHMYRYMLVQRSKAL 93
            +A Y+P  P +Y +ML QR K L
Sbjct: 216 TMASYIPLFPQLYFHMLRQRRKVL 239

[Close]

BLAST of Cp4.1LG01g08810 vs. TrEMBL
Match: A0A0A0L3F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114430 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-43
Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 1


Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKE FGFAPSLL+WLRYSTFLLLYVTGI+SE+GL+YLALPYMKESGKYS+RMPNKWNFSF
Sbjct: 124 MKETFGFAPSLLIWLRYSTFLLLYVTGISSEIGLIYLALPYMKESGKYSYRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           DY Y A+L+LAIY PGSPHMY YMLVQRSKALSKSKKE
Sbjct: 184 DYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 221

[Close]

BLAST of Cp4.1LG01g08810 vs. TrEMBL
Match: A0A0A9JDF9_ARUDO (PAS2 OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-37
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1  MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
          MKEA GFAPS LLWLRYSTF++LY TGI+SEVGL+Y+ALPYMKES KY  R+PNKWNFSF
Sbjct: 1  MKEALGFAPSWLLWLRYSTFMILYPTGISSEVGLIYIALPYMKESEKYCLRLPNKWNFSF 60

Query: 61 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 97
          DYLYG++L +AIYVPGSPHM+RYML QR KALSK K
Sbjct: 61 DYLYGSLLAIAIYVPGSPHMFRYMLAQRKKALSKGK 96

[Close]

BLAST of Cp4.1LG01g08810 vs. TrEMBL
Match: A0A0A9J5C4_ARUDO (PAS2 OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.3e-37
Identity = 75/96 (78.12%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1  MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
          MKEA GFAPS LLWLRYSTF++LY TGI+SEVGL+Y+ALPYMKES KY  R+PNKWNFSF
Sbjct: 1  MKEALGFAPSWLLWLRYSTFMILYPTGISSEVGLIYIALPYMKESEKYCLRLPNKWNFSF 60

Query: 61 DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 97
          DYLYG+++ +AIYVPGSPHM+RYML QR KALSK K
Sbjct: 61 DYLYGSLVAIAIYVPGSPHMFRYMLTQRKKALSKGK 96

[Close]

BLAST of Cp4.1LG01g08810 vs. TrEMBL
Match: V5M181_GOSHI (3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Gossypium hirsutum GN=PAS2-1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.6e-37
Identity = 78/98 (79.59%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPS  LWLRYSTFL+LY TGI+SEVGL+Y ALPY+K S KY FRMPNKWNFSF
Sbjct: 124 MKEAFGFAPSWHLWLRYSTFLVLYPTGISSEVGLIYFALPYIKASEKYCFRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           DY Y A+L L IYVPGSPH+YRYML QR +ALSKSKKE
Sbjct: 184 DYFYAAILALGIYVPGSPHLYRYMLGQRKRALSKSKKE 221

[Close]

BLAST of Cp4.1LG01g08810 vs. TrEMBL
Match: A0A0B0NJ37_GOSAR (3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like protein OS=Gossypium arboreum GN=F383_18041 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.6e-37
Identity = 78/98 (79.59%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPS  LWLRYSTFL+LY TGI+SEVGL+Y ALPY+K S KY FRMPNKWNFSF
Sbjct: 21  MKEAFGFAPSWHLWLRYSTFLVLYPTGISSEVGLIYFALPYIKASEKYCFRMPNKWNFSF 80

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           DY Y A+L L IYVPGSPH+YRYML QR +ALSKSKKE
Sbjct: 81  DYFYAAILALGIYVPGSPHLYRYMLGQRKRALSKSKKE 118

[Close]

BLAST of Cp4.1LG01g08810 vs. TAIR10
Match: AT5G10480.3 (AT5G10480.3 Protein-tyrosine phosphatase-like, PTPLA)

HSP 1 Score: 147.1 bits (370), Expect = 5.6e-36
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 1


Query: 2   KEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFD 61
           KEA GFAPS  LWLRYS+FLLLY TGITSEVGL+YLALP++K S  YS RMPN  NFSFD
Sbjct: 134 KEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFD 193

Query: 62  YLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           + Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 194 FFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 230

[Close]

BLAST of Cp4.1LG01g08810 vs. TAIR10
Match: AT5G59770.1 (AT5G59770.1 Protein-tyrosine phosphatase-like, PTPLA)

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 1


Query: 6   GFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWN-FSFDYLY 65
           G  P  L +LRY+ F+++Y TG+  E+ ++Y ALPY+KE   Y+    N ++ F F Y  
Sbjct: 176 GRCPYWLTYLRYTGFIVIYPTGLVGELLIMYKALPYVKERNLYA----NFFSVFPFSYYD 235

Query: 66  GAMLILAIYVPGSPHMYRYMLVQRSKALSKSKK 98
               +L +Y      +Y  +  QR   L KSKK
Sbjct: 236 FLWAVLLVYPFLWLKLYLQLFKQRKSKLGKSKK 264

[Close]

BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: gi|659102526|ref|XP_008452179.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein])

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 88/98 (89.80%), Postives = 93/98 (94.90%), Query Frame = 1


Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKE FGFAPSLLLWLRYSTFLLLYVTGI+SEVGL+YLALPYMKESGKYS+RMPNKWNFSF
Sbjct: 124 MKETFGFAPSLLLWLRYSTFLLLYVTGISSEVGLIYLALPYMKESGKYSYRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           DY Y A+L+LAIY PGSPHMY YMLVQRSKALSKSKKE
Sbjct: 184 DYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 221

[Close]

BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: gi|449431918|ref|XP_004133747.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-43
Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 1


Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKE FGFAPSLL+WLRYSTFLLLYVTGI+SE+GL+YLALPYMKESGKYS+RMPNKWNFSF
Sbjct: 124 MKETFGFAPSLLIWLRYSTFLLLYVTGISSEIGLIYLALPYMKESGKYSYRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           DY Y A+L+LAIY PGSPHMY YMLVQRSKALSKSKKE
Sbjct: 184 DYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 221

[Close]

BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: gi|697139330|ref|XP_009623751.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like [Nicotiana tomentosiformis])

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-37
Identity = 80/97 (82.47%), Postives = 85/97 (87.63%), Query Frame = 1


Query: 2   KEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSFD 61
           KEAFG APS LLWLRYSTFLLLY TGITSEVGL+Y ALPYMKESGKY+ RMPNKWNFSF 
Sbjct: 125 KEAFGSAPSWLLWLRYSTFLLLYPTGITSEVGLIYNALPYMKESGKYAVRMPNKWNFSFG 184

Query: 62  YLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           Y Y A++ LAIYVPG PH+YRYML QR KALSKSKKE
Sbjct: 185 YYYAALVCLAIYVPGCPHLYRYMLGQRKKALSKSKKE 221

[Close]

BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: gi|1009145859|ref|XP_015890567.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like [Ziziphus jujuba])

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-37
Identity = 80/98 (81.63%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEA GFAPS LLWLRYSTFLLLY TGITSEVGL+YLALPY+KES KY  RMPNKWNFSF
Sbjct: 124 MKEALGFAPSWLLWLRYSTFLLLYPTGITSEVGLIYLALPYIKESEKYCLRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           DY Y A++ L IYVPGSPHMY YML QR KALSKSK+E
Sbjct: 184 DYFYLAIIALGIYVPGSPHMYTYMLGQRKKALSKSKRE 221

[Close]

BLAST of Cp4.1LG01g08810 vs. NCBI nr
Match: gi|558553867|gb|AHA62438.1| (3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Gossypium hirsutum])

HSP 1 Score: 161.4 bits (407), Expect = 8.1e-37
Identity = 78/98 (79.59%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1   MKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWNFSF 60
           MKEAFGFAPS  LWLRYSTFL+LY TGI+SEVGL+Y ALPY+K S KY FRMPNKWNFSF
Sbjct: 124 MKEAFGFAPSWHLWLRYSTFLVLYPTGISSEVGLIYFALPYIKASEKYCFRMPNKWNFSF 183

Query: 61  DYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 99
           DY Y A+L L IYVPGSPH+YRYML QR +ALSKSKKE
Sbjct: 184 DYFYAAILALGIYVPGSPHLYRYMLGQRKRALSKSKKE 221

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HACDA_ORYSJ	2.8e-37	76.04	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa...	[more]
HACDB_ORYSJ	4.0e-36	72.92	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa...	[more]
HACD_ARATH	9.9e-35	75.26	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t...	[more]
HACD1_MOUSE	7.1e-17	46.43	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus GN=Hacd1 PE...	[more]
HACD1_CANLF	2.1e-16	45.24	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris G...	[more]

BLAST of Cp4.1LG01g08810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F8_CUCSA	3.1e-43	87.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114430 PE=4 SV=1	[more]
A0A0A9JDF9_ARUDO	1.5e-37	79.17	PAS2 OS=Arundo donax PE=4 SV=1	[more]
A0A0A9J5C4_ARUDO	3.3e-37	78.13	PAS2 OS=Arundo donax PE=4 SV=1	[more]
V5M181_GOSHI	5.6e-37	79.59	3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Gossypium hirsutum GN=PAS2-1 PE=2 ...	[more]
A0A0B0NJ37_GOSAR	5.6e-37	79.59	3-hydroxyacyl-CoA dehydratase PASTICCINO 2-like protein OS=Gossypium arboreum GN...	[more]

BLAST of Cp4.1LG01g08810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10480.3	5.6e-36	75.26	Protein-tyrosine phosphatase-like, PTPLA	[more]
AT5G59770.1	1.6e-06	35.48	Protein-tyrosine phosphatase-like, PTPLA	[more]

BLAST of Cp4.1LG01g08810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102526\|ref\|XP_008452179.1\|	2.0e-43	89.80	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]	[more]
gi\|449431918\|ref\|XP_004133747.1\|	4.4e-43	87.76	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cuc...	[more]
gi\|697139330\|ref\|XP_009623751.1\|	2.8e-37	82.47	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like...	[more]
gi\|1009145859\|ref\|XP_015890567.1\|	3.6e-37	81.63	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like...	[more]
gi\|558553867\|gb\|AHA62438.1\|	8.1e-37	79.59	3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Gossypium hirsutum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007482	Tyr_Pase-like_PTPLA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0044425	membrane part
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08810.1	Cp4.1LG01g08810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PANTHER	PTHR11035	PTPLA DOMAIN PROTEIN	coord: 1..98 score: 1.3
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PFAM	PF04387	PTPLA	coord: 6..94 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g08810	Cucsa.260310	Cucumber (Gy14) v1	cgycpeB0680
Cp4.1LG01g08810	CmaCh04G008660	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g08810	CmoCh04G009290	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g08810	Cla004547	Watermelon (97103) v1	cpewmB387
Cp4.1LG01g08810	Csa3G114430	Cucumber (Chinese Long) v2	cpecuB393
Cp4.1LG01g08810	MELO3C016419	Melon (DHL92) v3.5.1	cpemeB409
Cp4.1LG01g08810	ClCG10G007720	Watermelon (Charleston Gray)	cpewcgB349
Cp4.1LG01g08810	CSPI03G06730	Wild cucumber (PI 183967)	cpecpiB392
Cp4.1LG01g08810	Lsi05G007780	Bottle gourd (USVL1VR-Ls)	cpelsiB370
Cp4.1LG01g08810	MELO3C016419.2	Melon (DHL92) v3.6.1	cpemedB482
Cp4.1LG01g08810	CsaV3_3G006860	Cucumber (Chinese Long) v3	cpecucB0491
Cp4.1LG01g08810	Bhi11G000790	Wax gourd	cpewgoB0478
Cp4.1LG01g08810	CsGy3G006860	Cucumber (Gy14) v2	cgybcpeB369
Cp4.1LG01g08810	Carg25856	Silver-seed gourd	carcpeB0013

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g08810	Cucurbita pepo (Zucchini)	cpecpeB233
Cp4.1LG01g08810	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g08810	Cucurbita moschata (Rifu)	cmocpeB312
Cp4.1LG01g08810	Silver-seed gourd	carcpeB1417