Cp4.1LG01g08140 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g08140
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	NADH:ubiquinone oxidoreductase, 17.2kDa subunit
Location	Cp4.1LG01 : 5120449 .. 5124357 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTATTCTTCGTTGGCTTATTGGGAGAACGAGAAGGAAGTCGAGGGATTTTTCGAAGCTTCAATTGAGACAGAACGCGATCGGAAGGCAAGTCTGCGTTCATTTTCTCTACAAACTTCTGACGGAGAGCATAATCTTTGTCGACGTAGAAGAGGATAAATTATGGGCGTTCTGTAATGTCCGTGCAAACGGTGCTAGGAGGAAAGATAATGTCGAAGCTTTTGAAGAAAATTGCCGGCTTCTTCACCGACAGAACTCTGATGGGAGTTGACAAAGCGGGAAACAGATACTTCTTTGTAAAAGAAGAAATTGATGGCATAAGTAAGTAGCTCTAAATCCCCTTAAATTGCTCATTCTCATTGTTCCATAACTGCTTTTGATCGGAATGAGGATCTTGTTCTGTAATTTGTCTTACATTTGCCGTTGTGAGATTCCGACTGAGTTTTTGCTTCTTTTTGTTTCTTTATGGATTTCCAGTTGCATTCACCAATTTTAAGAACTGTCGGAAGTCTGAAATTACACAAAAGTTAACAGCTAATCTTAATCCATGGAAAGCCAATAATTTCCCCCCGAAAACTGTTGAACTCTTTCTTCTGCTAGTGGTTTCATCTCTGTGTGCCTTTGCAATTGAATTATAAAATTTTAATCATTGGGGCCTTTCCCTTTATCTTAGTCGACATTAAATGAATGTTATTCCTGAGATATAAAGAGCAAGAGCACTCATGATTTAGCTTGATTGGTAATTAGCTGCCTTTCTTATACAGTGAAACTTTTATTACTGTACGTATACAGCTCACACAACTTTTACTCATTGGTTTGCTAGTGAAAGAGAAGAGATGGGTGGTTTTTAAGGGTGAGGATGATCCAACTTCAATTCCAGGTATGCATTTATGTACCTATAGTTAAAATTTAAGAGAAGGCCTTTGTTATTCAAATCATCTGATTATGTCGTGTTTAAATTAGGGTTTGAAATATTGGGTAAATTATAAATTTTATCCCTATAGTTAGGAGAAAGTTAGAATTTAGTCTGGATGATTTTTAAAGTTTGAATTTCTTCTTTATGATATGGTAAAACCTCATAAATAGTTTTTATGATTTGATATTACCCTCATAAATGCTTCCTCCTTCGAAGTTGGATATGTAGTTTAGGAGGAACTCGACATGCTGGTGGTAGGTTTTTGTGATGATGATTGCTTATATTTGCTGCAGTGGAATGGATATGTTGGTTAAATGGGCAGCGTAAAAAGGCTCCAACTCCCGAGGTAACTTCTTCCATGACCAACCGGATCTCTTTGCATCCCCCTTGATTGGCCTGAAGAATGGTGATTGGTGTGCTACTCTTGATTTAATATTTAAATGGTTCTTTTGTCATTGTCTTCAGGAAATGATGGAGTTAGAAGCTAGGCGTGAACATGTACGACAAAATGTTGCCTGTATGTTGACTCTTCATGCCTCTTATTCCTTTGTTGTTCATGATGGAATATTTTACAATATGCATTTAGAACTTTCAACTTCTCTCTATGCAAATTGTAACTCATATACATACAGGCAGAAAGGGATGAACTGCATTGTGCCTAAAATGGTCAAATATAAGAATCTCCAAACATATTCATATCTGAGAACTGCTTTTTGTACGAACTGATCGTGAACTTTATAATCTTACTTAAAGACCTAAGAAGCATGGATATGGATGCAAGCCTCAAATACAACATGACATACCATTTAAAAAAAATCTAGGACACGGACATGAAAAAACACGTTTATTAGAATATGAAATTTTATAATACATCAGTTTTATACTAGAAAGAAATTCAAAATCAATAAGATTATGCGTTTATATGCTTGAAAAATGAGTTTGATGTTTTTTACTCTCAAAATTTATTATTTTTGTACTATATTATTATGTGTCTATTTAGTATACTTTACGTGTGTTTGATACATGTTTAACAAATGTTGGATCTATATTGGTTTTGTACGACAACTAGTGACAGACTCATGTATTGTACTTAGCAAGTATCCAATATGTGTCCAACAAGTGTCGAAGTGTCTGACACATGTTAGATATGGTACATGGACACGCTAGCTAAATAAATTGTCTCTGCTTCTTAGCTTAAGACATTCGTTCAAAATTATTTTTTTCTGCCTTATATCTTCTTACAAGATGGTTTATGCTTCCAGTTGGAATTCATCTAGCTCAACTTTTTTTCTGTTAATGAATTCATATTTCTTTTTATGAGATACAGAACCGGATCAGCATTTGATTAGCAATTGAAGTTCAAATTTTAATTTTGTTTGATTCTTTTTGAAGAGCCAATACCATTCTCATTCTTTGACTTAACAAGGTCTTTTTGGAAATTTGTATGTCTAATTTAGTACTCAAGAAAGAAGAGATGGAAAGAAAATCTAAAGAAAGCAATCTACGGAAAGTCGTTAGCACTGGTGAGTTGCTTATTTACTAACTCACGTGCTTGTTACTTGGAGCATATTACTAACATTCTTTTGCTGCATGGGTCAAGTTGCAGGTCCTAACTTGAAAAGCTTTATTCGACAATTTCCAACTGGTTCAGAAGGTATCATATGATCTAATAATGTATTTTCTTACCCCTTTATTTCCTCTTGGTCCTCCCCCCAAGATAAAAGAAATGTATTTGCTTCAATACTTAGAATAGGATTTTCTTAATGGCTATATTGAGATAGAAAGAAGCCGAGGTTCCCATTTGTATCACTTGCAAAAGCATTTGGTTTAAAATAATAATTTAGAATGATCTTAATTTTCTTCATTTGGTTGATTACTTTCTTGTATTTCTTCTGGTCACATATACCTCGCTCTCTCCCAAACTGATAGTCCTTCATTTCCTTTCGATCAGAGTTTATTTTATTGATTCGATACATATAATTGTTCATTCATTTTGGTTTTTCTTGAACAAAGGTGCTCAAGACAACGAAGGATCGGCTGCAAAGGATAGCCTGAGGTAGGTCATTCATTTTGAATGTCATAACTATTTAACTTATAATTTTTGACTCAATGCTATGGTCTTCCATGAAAAATTTTGAATGTACTTTTCCATGTTGTTCGCCTTTGCCATGTGACTTGTATTGAGTGTTATTATTCTTTCTGAGTTTTCTAGGTAATCAATATTGTGATCCTTTAGCATTTATTCTGTTAAAAACATCTAAAGTTTTCTTTTGCAATGTATTTAATTTATAATCAATGTGCTTAAATTTAGAGAACTGTTCCTTACTTGTAATATGGATTTACCTTTGCTTCAACTACCAGGAACTCAAAAGAAAATGAGGCAGCTAAAGAGCAACCAATTCCAGAGTAAGTGGATTTTTCTTTCTTTCTGATCTCACTCAACTTATTAGTCATAACTATCAACATTAGAGCCATAGGATTTATGTACTAGCTGAATTATGTATCAAAAAGTTGCCGTTCTTTCATTTTCAGGTCCTCCGAGCCCATGGGATCTGGTCAAACATTCAGACCAGGAACGTGGCAGCCTCCAACATGAGTGCTGGTGCTCTTCAACTTCAAGAGAAGAACTCTCCAACCCTTGAACTAGCAGTACAAGACTTCTGTATCAGCAATTTTGTATGCTTCCGTTTACTCAACATTCAACTTTTTCCGAGGGACGCCCTTGTATTTGACTCTTACACATCCTGCCCTCCATTGTTCTAAACACAAGGTTGTGCGTCGCCTTGGTTTCAAATGCTCATATAGTATTTGGTGAAAGCAAGGATAACTATAGTTTTTTAAATGAATATCCCTAAAGAATACGTGTCACTATGGGATAAATATCTCAATATTGATTTAACCCATTTGAATCTCATTTAAATTTTAAATATGTTTTTATTTTAATATTTAAGTTATCAAATACAATATATATTCCTTTCTTTGAATATTTCAAA

mRNA sequence

CTTTATTCTTCGTTGGCTTATTGGGAGAACGAGAAGGAAGTCGAGGGATTTTTCGAAGCTTCAATTGAGACAGAACGCGATCGGAAGGCAAGTCTGCGTTCATTTTCTCTACAAACTTCTGACGGAGAGCATAATCTTTGTCGACGTAGAAGAGGATAAATTATGGGCGTTCTGTAATGTCCGTGCAAACGGTGCTAGGAGGAAAGATAATGTCGAAGCTTTTGAAGAAAATTGCCGGCTTCTTCACCGACAGAACTCTGATGGGAGTTGACAAAGCGGGAAACAGATACTTCTTTGTAAAAGAAGAAATTGATGGCATAATGAAAGAGAAGAGATGGGTGGTTTTTAAGGGTGAGGATGATCCAACTTCAATTCCAGTGGAATGGATATGTTGGTTAAATGGGCAGCGTAAAAAGGCTCCAACTCCCGAGGAAATGATGGAGTTAGAAGCTAGGCGTGAACATGTACGACAAAATGTTGCCTTACTCAAGAAAGAAGAGATGGAAAGAAAATCTAAAGAAAGCAATCTACGGAAAGTCGTTAGCACTGGTCCTAACTTGAAAAGCTTTATTCGACAATTTCCAACTGGTTCAGAAGGTGCTCAAGACAACGAAGGATCGGCTGCAAAGGATAGCCTGAGGAACTCAAAAGAAAATGAGGCAGCTAAAGAGCAACCAATTCCAGAGTCCTCCGAGCCCATGGGATCTGGTCAAACATTCAGACCAGGAACGTGGCAGCCTCCAACATGAGTGCTGGTGCTCTTCAACTTCAAGAGAAGAACTCTCCAACCCTTGAACTAGCAGTACAAGACTTCTGTATCAGCAATTTTGTATGCTTCCGTTTACTCAACATTCAACTTTTTCCGAGGGACGCCCTTGTATTTGACTCTTACACATCCTGCCCTCCATTGTTCTAAACACAAGGTTGTGCGTCGCCTTGGTTTCAAATGCTCATATAGTATTTGGTGAAAGCAAGGATAACTATAGTTTTTTAAATGAATATCCCTAAAGAATACGTGTCACTATGGGATAAATATCTCAATATTGATTTAACCCATTTGAATCTCATTTAAATTTTAAATATGTTTTTATTTTAATATTTAAGTTATCAAATACAATATATATTCCTTTCTTTGAATATTTCAAA

Coding sequence (CDS)

ATGTCCGTGCAAACGGTGCTAGGAGGAAAGATAATGTCGAAGCTTTTGAAGAAAATTGCCGGCTTCTTCACCGACAGAACTCTGATGGGAGTTGACAAAGCGGGAAACAGATACTTCTTTGTAAAAGAAGAAATTGATGGCATAATGAAAGAGAAGAGATGGGTGGTTTTTAAGGGTGAGGATGATCCAACTTCAATTCCAGTGGAATGGATATGTTGGTTAAATGGGCAGCGTAAAAAGGCTCCAACTCCCGAGGAAATGATGGAGTTAGAAGCTAGGCGTGAACATGTACGACAAAATGTTGCCTTACTCAAGAAAGAAGAGATGGAAAGAAAATCTAAAGAAAGCAATCTACGGAAAGTCGTTAGCACTGGTCCTAACTTGAAAAGCTTTATTCGACAATTTCCAACTGGTTCAGAAGGTGCTCAAGACAACGAAGGATCGGCTGCAAAGGATAGCCTGAGGAACTCAAAAGAAAATGAGGCAGCTAAAGAGCAACCAATTCCAGAGTCCTCCGAGCCCATGGGATCTGGTCAAACATTCAGACCAGGAACGTGGCAGCCTCCAACATGA

Protein sequence

MSVQTVLGGKIMSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVSTGPNLKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQPPT

Homology

[Close]

BLAST of Cp4.1LG01g08140 vs. TrEMBL
Match: A0A0A0L526_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077630 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.3e-77
Identity = 151/183 (82.51%), Postives = 163/183 (89.07%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL  KIA FF++RTL+GVDKAGNRYFFVKEEIDGIMKEKRWV+FKGEDDPTSIPVEWI
Sbjct: 1   MSKLFGKIAAFFSNRTLVGVDKAGNRYFFVKEEIDGIMKEKRWVLFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRKKAPTPEEM ELEARRE VRQNVALLKKEEMER SKE NLRK++ST    GP+
Sbjct: 61  CWLNGQRKKAPTPEEMRELEARRERVRQNVALLKKEEMERNSKEGNLRKIISTGQVMGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQ 191
           LKSFIRQ PTGSEGAQD EG   +DSLRNS E EA +E+PIPESSEP+GSG TF+PGTWQ
Sbjct: 121 LKSFIRQVPTGSEGAQDVEGLPTRDSLRNSNEKEADQEKPIPESSEPVGSGHTFKPGTWQ 180

[Close]

BLAST of Cp4.1LG01g08140 vs. TrEMBL
Match: M5WJ72_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012099mg PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.9e-67
Identity = 130/183 (71.04%), Postives = 155/183 (84.70%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL +++AGFFT+RT++G+DKAGNRYF  K+E+DGIMKEKRWVVFKGE+DPTSIPVEWI
Sbjct: 1   MSKLFQRVAGFFTNRTMVGMDKAGNRYFAKKDEVDGIMKEKRWVVFKGEEDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRK+APTPEE+M+LEARRE VRQNVA LKKEE ERK +E + RKV+ST    GP+
Sbjct: 61  CWLNGQRKRAPTPEELMDLEARRERVRQNVAFLKKEEEERKEREGSTRKVISTDKVGGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQ 191
           LKSFIRQF   SEG ++ + S + + +RNSKE EA K +  PES+EP GSGQTFRPGTWQ
Sbjct: 121 LKSFIRQFGVPSEGDENQKESVSMEGVRNSKEKEAKKAKQDPESTEPTGSGQTFRPGTWQ 180

[Close]

BLAST of Cp4.1LG01g08140 vs. TrEMBL
Match: A0A067KSL9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00894 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.2e-63
Identity = 132/183 (72.13%), Postives = 148/183 (80.87%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL  +I+GFF+ RTL+GVDKAGNRYF  KEEIDGIMKEKRWVVFKGEDDPTSIPVEWI
Sbjct: 1   MSKLFSRISGFFSSRTLVGVDKAGNRYFTRKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRK+APTPEEM+ELEARRE +RQNVALLKKEE ERK+KE + RKVV T    GP+
Sbjct: 61  CWLNGQRKRAPTPEEMIELEARRELIRQNVALLKKEEEERKAKEGSSRKVVRTGKVGGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSK-ENEAAKEQPIPESSEPMGSGQTFRPGTW 190
           LKSF+RQFP  SEG +  E S A D  R  + E E A  +P+P SSE  GSG TF+PGTW
Sbjct: 121 LKSFMRQFPIASEGEKLGEESDAMDKQRTREAEAEIANGEPLPMSSEATGSGATFKPGTW 180

[Close]

BLAST of Cp4.1LG01g08140 vs. TrEMBL
Match: K7MQW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G095900 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.4e-60
Identity = 125/183 (68.31%), Postives = 146/183 (79.78%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           M +LL KI+GF ++RT++GVDK GN+YF   EE+DGI+KEKRWV+FKGE+DPTSIPVEWI
Sbjct: 1   MRRLLGKISGFLSNRTMVGVDKTGNKYFTRNEEVDGIVKEKRWVIFKGEEDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRKKAPTPEEMMELEARRE VRQNVALLKKEE ER +KE +  K VST    GP+
Sbjct: 61  CWLNGQRKKAPTPEEMMELEARRERVRQNVALLKKEEEERITKEGSKGKRVSTGKVSGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQ 191
           LKSFI+Q P  SEG +  E  +A   LRN +E+ A KE+   ESSEP GSG +FRPGTWQ
Sbjct: 121 LKSFIQQLPVSSEGKEVEEPPSAMGGLRNPQESLAEKEKDESESSEPTGSGASFRPGTWQ 180

[Close]

BLAST of Cp4.1LG01g08140 vs. TrEMBL
Match: A0A0D2M8I2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G089200 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.4e-60
Identity = 129/183 (70.49%), Postives = 145/183 (79.23%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKLL +IAGFF++RT +GVDKAGNRYF  KEEIDGI+KEKRWV FKGE DPTSI VEWI
Sbjct: 1   MSKLLSRIAGFFSNRTFIGVDKAGNRYFTRKEEIDGILKEKRWVEFKGEQDPTSISVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRK APTPEEMMELEARRE VR NVALLKKEE ERK++E + RK VS     GP+
Sbjct: 61  CWLNGQRKVAPTPEEMMELEARRERVRLNVALLKKEEEERKAREGS-RKAVSLGKVGGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQ 191
           LKSFIRQFP+ SEG +  + S  +      KE    KE+PIPESSEP GSG T++PGTWQ
Sbjct: 121 LKSFIRQFPSASEGDKVEQASDGR-----IKETHEEKEEPIPESSEPTGSGATYKPGTWQ 177

[Close]

BLAST of Cp4.1LG01g08140 vs. TAIR10
Match: AT4G26965.1 (AT4G26965.1 NADH:ubiquinone oxidoreductase, 17.2kDa subunit)

HSP 1 Score: 207.2 bits (526), Expect = 8.8e-54
Identity = 108/185 (58.38%), Postives = 137/185 (74.05%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MS+L  + AG F+ ++ +GVDK GN+YF   EEIDG +KEKRWV F+ E+DPTSIPVEWI
Sbjct: 1   MSRLWARFAGLFSSKSFIGVDKTGNKYFSRMEEIDGFVKEKRWVKFRREEDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVV---STGPNL 131
           CWLNGQRK+APTPEEM+ELEARRE V+ NVALLKKEE E+K++    RK+      GP+L
Sbjct: 61  CWLNGQRKRAPTPEEMIELEARRERVKLNVALLKKEEEEKKARVGTGRKITIGKVDGPDL 120

Query: 132 KSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENE---AAKEQPIPESSEPMGSGQTFRPGT 191
            SF+RQFP  S+G +  E S   D  R +KE+E    + E P P+++EP GSG +FRPGT
Sbjct: 121 TSFVRQFPPDSKGGEPEEASEEADKSR-AKEHEPEIVSAEPPEPKTTEPSGSGSSFRPGT 180

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: gi|449470447|ref|XP_004152928.1| (PREDICTED: uncharacterized protein LOC101214441 isoform X2 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 1.8e-77
Identity = 151/183 (82.51%), Postives = 163/183 (89.07%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL  KIA FF++RTL+GVDKAGNRYFFVKEEIDGIMKEKRWV+FKGEDDPTSIPVEWI
Sbjct: 1   MSKLFGKIAAFFSNRTLVGVDKAGNRYFFVKEEIDGIMKEKRWVLFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRKKAPTPEEM ELEARRE VRQNVALLKKEEMER SKE NLRK++ST    GP+
Sbjct: 61  CWLNGQRKKAPTPEEMRELEARRERVRQNVALLKKEEMERNSKEGNLRKIISTGQVMGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQ 191
           LKSFIRQ PTGSEGAQD EG   +DSLRNS E EA +E+PIPESSEP+GSG TF+PGTWQ
Sbjct: 121 LKSFIRQVPTGSEGAQDVEGLPTRDSLRNSNEKEADQEKPIPESSEPVGSGHTFKPGTWQ 180

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: gi|778676073|ref|XP_011650524.1| (PREDICTED: uncharacterized protein LOC101214441 isoform X1 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 5.0e-75
Identity = 150/190 (78.95%), Postives = 163/190 (85.79%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL  KIA FF++RTL+GVDKAGNRYFFVKEEIDGIMKEKRWV+FKGEDDPTSIPVEWI
Sbjct: 1   MSKLFGKIAAFFSNRTLVGVDKAGNRYFFVKEEIDGIMKEKRWVLFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRKKAPTPEEM ELEARRE VRQNVALLKKEEMER SKE NLRK++ST    GP+
Sbjct: 61  CWLNGQRKKAPTPEEMRELEARRERVRQNVALLKKEEMERNSKEGNLRKIISTGQVMGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPE-------SSEPMGSGQT 191
           LKSFIRQ PTGSEGAQD EG   +DSLRNS E EA +E+PIP+       SSEP+GSG T
Sbjct: 121 LKSFIRQVPTGSEGAQDVEGLPTRDSLRNSNEKEADQEKPIPDSHSFIFRSSEPVGSGHT 180

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: gi|694421736|ref|XP_009338702.1| (PREDICTED: uncharacterized protein LOC103931020 [Pyrus x bretschneideri])

HSP 1 Score: 268.5 bits (685), Expect = 9.1e-69
Identity = 135/183 (73.77%), Postives = 155/183 (84.70%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL +K+AGFFT+RT++G+DKAGNRYF  KEE+DGIMKEKRWV FKGEDDPTSIPVEWI
Sbjct: 1   MSKLFQKVAGFFTNRTMVGMDKAGNRYFARKEEVDGIMKEKRWVAFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRK+APTPEE+ ELEARRE VRQNVALLKKEE ERK++E + RKV++T    GP+
Sbjct: 61  CWLNGQRKRAPTPEELAELEARRERVRQNVALLKKEEEERKAREGSTRKVINTDKVGGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQ 191
           LKSFI+QFP  SEG  + E S A D +RNSKE EA K +  PES+EP GSGQTFRPGTWQ
Sbjct: 121 LKSFIQQFPGSSEGGLNPEESVATDGVRNSKEKEAKKGKEAPESTEPTGSGQTFRPGTWQ 180

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: gi|657987455|ref|XP_008385880.1| (PREDICTED: uncharacterized protein LOC103448400 [Malus domestica])

HSP 1 Score: 264.2 bits (674), Expect = 1.7e-67
Identity = 133/183 (72.68%), Postives = 154/183 (84.15%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL +K+AGFFT+RT++G+DKAGNRYF  KEE+DGIMKEKRWV FKGEDDPTSIPVEWI
Sbjct: 1   MSKLFQKVAGFFTNRTMVGMDKAGNRYFARKEEVDGIMKEKRWVAFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRK+APT EE+ ELEARRE VRQNVALLKKEE ERK++E + RKV++T    GP+
Sbjct: 61  CWLNGQRKRAPTXEELAELEARRERVRQNVALLKKEEEERKAREGSTRKVINTDKVGGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQ 191
           LKSFI+QFP  SEG  + E S A + +RNSKE EA K +  PES+EP GSGQTFRPGTWQ
Sbjct: 121 LKSFIQQFPGSSEGGVNPEESVATEGVRNSKEKEAKKAKEAPESTEPTGSGQTFRPGTWQ 180

[Close]

BLAST of Cp4.1LG01g08140 vs. NCBI nr
Match: gi|694363454|ref|XP_009360998.1| (PREDICTED: uncharacterized protein LOC103951367 [Pyrus x bretschneideri])

HSP 1 Score: 263.1 bits (671), Expect = 3.8e-67
Identity = 130/183 (71.04%), Postives = 153/183 (83.61%), Query Frame = 1


Query: 12  MSKLLKKIAGFFTDRTLMGVDKAGNRYFFVKEEIDGIMKEKRWVVFKGEDDPTSIPVEWI 71
           MSKL +K+AGFFT+RT++G+D+AGNRYF  KEE+DGIMKE+RWV FKGEDDPTSIPVEWI
Sbjct: 1   MSKLFQKVAGFFTNRTMVGMDRAGNRYFARKEEVDGIMKEERWVAFKGEDDPTSIPVEWI 60

Query: 72  CWLNGQRKKAPTPEEMMELEARREHVRQNVALLKKEEMERKSKESNLRKVVST----GPN 131
           CWLNGQRK+APTPEE+ ELEARRE VRQNVALLKKEE ERK++E +  K+++T    GP+
Sbjct: 61  CWLNGQRKRAPTPEELAELEARRERVRQNVALLKKEEEERKARECSTHKIINTDKVGGPD 120

Query: 132 LKSFIRQFPTGSEGAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQ 191
           LKSFIRQFP  SEG  + E S A + +RNSKE EA K + +PES EP GSGQ FRPGTWQ
Sbjct: 121 LKSFIRQFPGSSEGGVNQEESVATEGVRNSKEKEAKKAKEVPESPEPTGSGQAFRPGTWQ 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g08140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L526_CUCSA	1.3e-77	82.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077630 PE=4 SV=1	[more]
M5WJ72_PRUPE	5.9e-67	71.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012099mg PE=4 SV=1	[more]
A0A067KSL9_JATCU	5.2e-63	72.13	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00894 PE=4 SV=1	[more]
K7MQW2_SOYBN	2.4e-60	68.31	Uncharacterized protein OS=Glycine max GN=GLYMA_18G095900 PE=4 SV=1	[more]
A0A0D2M8I2_GOSRA	2.4e-60	70.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G089200 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g08140 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26965.1	8.8e-54	58.38	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]

BLAST of Cp4.1LG01g08140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470447\|ref\|XP_004152928.1\|	1.8e-77	82.51	PREDICTED: uncharacterized protein LOC101214441 isoform X2 [Cucumis sativus]	[more]
gi\|778676073\|ref\|XP_011650524.1\|	5.0e-75	78.95	PREDICTED: uncharacterized protein LOC101214441 isoform X1 [Cucumis sativus]	[more]
gi\|694421736\|ref\|XP_009338702.1\|	9.1e-69	73.77	PREDICTED: uncharacterized protein LOC103931020 [Pyrus x bretschneideri]	[more]
gi\|657987455\|ref\|XP_008385880.1\|	1.7e-67	72.68	PREDICTED: uncharacterized protein LOC103448400 [Malus domestica]	[more]
gi\|694363454\|ref\|XP_009360998.1\|	3.8e-67	71.04	PREDICTED: uncharacterized protein LOC103951367 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0008137	NADH dehydrogenase (ubiquinone) activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007763	NDUFA12

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0016020	membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respiratory chain
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08140.1	Cp4.1LG01g08140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PANTHER	PTHR12910	NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2	coord: 12..89 score: 3.1E-50coord: 133..190 score: 3.1
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PFAM	PF05071	NDUFA12	coord: 27..106 score: 4.2
None	No IPR available	unknown	Coil	Coil	coord: 87..107 scor
None	No IPR available	PANTHER	PTHR12910:SF1	NADH:UBIQUINONE OXIDOREDUCTASE SUBUNIT-17.2	coord: 12..89 score: 3.1E-50coord: 133..190 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g08140	Cucsa.059960	Cucumber (Gy14) v1	cgycpeB0077
Cp4.1LG01g08140	CmoCh04G010290	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g08140	Cla005310	Watermelon (97103) v1	cpewmB386
Cp4.1LG01g08140	Csa3G077630	Cucumber (Chinese Long) v2	cpecuB393
Cp4.1LG01g08140	MELO3C025377	Melon (DHL92) v3.5.1	cpemeB413
Cp4.1LG01g08140	ClCG10G005400	Watermelon (Charleston Gray)	cpewcgB349
Cp4.1LG01g08140	CSPI03G05130	Wild cucumber (PI 183967)	cpecpiB392
Cp4.1LG01g08140	Lsi05G005970	Bottle gourd (USVL1VR-Ls)	cpelsiB370
Cp4.1LG01g08140	MELO3C025377.2	Melon (DHL92) v3.6.1	cpemedB484
Cp4.1LG01g08140	CsaV3_3G005130	Cucumber (Chinese Long) v3	cpecucB0491
Cp4.1LG01g08140	Bhi11G000481	Wax gourd	cpewgoB0484
Cp4.1LG01g08140	CsGy3G005190	Cucumber (Gy14) v2	cgybcpeB369
Cp4.1LG01g08140	Carg00071	Silver-seed gourd	carcpeB0938

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g08140	Cucurbita pepo (Zucchini)	cpecpeB007
Cp4.1LG01g08140	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g08140	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g08140	Cucurbita moschata (Rifu)	cmocpeB317
Cp4.1LG01g08140	Melon (DHL92) v3.5.1	cpemeB409