Cp4.1LG01g07390 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g07390
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSelf-incompatibility protein
LocationCp4.1LG01 : 5578075 .. 5578566 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCGCATAAGCTCGTGTTCTTGATTGGACTCTTGCTTATTGCCTTGTTCGACACGTCGATGGCCAAAGGCAAGTTTAGTAAGAATAGAAACCAAGACGTAATCCCTAAACGACCATATTCACCACCAAGGACACCCCTGATTCAATTTCGTAAATATCAAATCGAGATTCATAATGACTTGAGAATGTTTATATTGGACAGTCGTTGTTACTCGAAAGATGATGATTTAGGGTTGCATATATTGTTCCCCGACGATCAACAAAACTGGACGTTTCGAGCTAATTTTATGGAGACGACCAAATTCATCTGCAGATTGGAATGGCAATATGGGGAGTTGATATTTGATTCTTTTGTGAGTGATTATAATTTCTTGAACCGCCATTGTGGGAACTCAGTGTGTGGTTGGAGTGCAAGGCAAGATGGAGTTTATTTGACCAATGAAGTTGGTCAATATGTTTTTTATGATTATTGGGATATGTTGTTGTAA

mRNA sequence

ATGGCATCGCATAAGCTCGTGTTCTTGATTGGACTCTTGCTTATTGCCTTGTTCGACACGTCGATGGCCAAAGGCAAGTTTAGTAAGAATAGAAACCAAGACGTAATCCCTAAACGACCATATTCACCACCAAGGACACCCCTGATTCAATTTCGTAAATATCAAATCGAGATTCATAATGACTTGAGAATGTTTATATTGGACAGTCGTTGTTACTCGAAAGATGATGATTTAGGGTTGCATATATTGTTCCCCGACGATCAACAAAACTGGACGTTTCGAGCTAATTTTATGGAGACGACCAAATTCATCTGCAGATTGGAATGGCAATATGGGGAGTTGATATTTGATTCTTTTGTGAGTGATTATAATTTCTTGAACCGCCATTGTGGGAACTCAGTGTGTGGTTGGAGTGCAAGGCAAGATGGAGTTTATTTGACCAATGAAGTTGGTCAATATGTTTTTTATGATTATTGGGATATGTTGTTGTAA

Coding sequence (CDS)

ATGGCATCGCATAAGCTCGTGTTCTTGATTGGACTCTTGCTTATTGCCTTGTTCGACACGTCGATGGCCAAAGGCAAGTTTAGTAAGAATAGAAACCAAGACGTAATCCCTAAACGACCATATTCACCACCAAGGACACCCCTGATTCAATTTCGTAAATATCAAATCGAGATTCATAATGACTTGAGAATGTTTATATTGGACAGTCGTTGTTACTCGAAAGATGATGATTTAGGGTTGCATATATTGTTCCCCGACGATCAACAAAACTGGACGTTTCGAGCTAATTTTATGGAGACGACCAAATTCATCTGCAGATTGGAATGGCAATATGGGGAGTTGATATTTGATTCTTTTGTGAGTGATTATAATTTCTTGAACCGCCATTGTGGGAACTCAGTGTGTGGTTGGAGTGCAAGGCAAGATGGAGTTTATTTGACCAATGAAGTTGGTCAATATGTTTTTTATGATTATTGGGATATGTTGTTGTAA

Protein sequence

MASHKLVFLIGLLLIALFDTSMAKGKFSKNRNQDVIPKRPYSPPRTPLIQFRKYQIEIHNDLRMFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRLEWQYGELIFDSFVSDYNFLNRHCGNSVCGWSARQDGVYLTNEVGQYVFYDYWDMLL
Homology
[Close]
BLAST of Cp4.1LG01g07390 vs. TrEMBL
Match: A0A0A0KSN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G538550 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.5e-47
Identity = 95/163 (58.28%), Postives = 114/163 (69.94%), Query Frame = 1 

Query: 1   MASHKLVFLIGLLLIALFDTSMAKGKFSKNRNQDVIPKRPYSPPRTPLIQFRKYQIEIHN 60
           MA H LV LI L LI LFD SMA+  F+              P ++ +IQ   YQIEIHN
Sbjct: 1   MAPHLLVLLIFLFLIVLFDMSMARFSFA--------------PQKSSIIQLHHYQIEIHN 60

Query: 61  DLRMFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRLEWQYGELIFDSFV 120
           DL M++LDS C+SKD+DLGLHILFP + Q+W+F+ N  ETTKF C LEW+ G L FDSF 
Sbjct: 61  DLEMYLLDSHCFSKDNDLGLHILFPGELQDWSFQDNDFETTKFRCILEWENGLLEFDSFK 120

Query: 121 SDYNFLNRHCGNSVCGWSARQDGVYLTNEVGQYVFYDYWDMLL 164
           +++NFLN  CGN  C WSARQDGVYLTN  G+YVF DYWDML+
Sbjct: 121 TNHNFLNNFCGNLTCSWSARQDGVYLTNVKGEYVFQDYWDMLI 149

[Close]
BLAST of Cp4.1LG01g07390 vs. TrEMBL
Match: A0A0A0KL79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016040 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.1e-43
Identity = 79/134 (58.96%), Postives = 101/134 (75.37%), Query Frame = 1 

Query: 29  KNRNQDVIPKRPYSPPRTPLIQFRKYQIEIHNDLRMFILDSRCYSKDDDLGLHILFPDDQ 88
           K +N+   PK   S P  P++ F ++ +EIHNDLRMFILDS CYSKDDDLGLHILFPD++
Sbjct: 5   KAKNKSPTPK--LSVPNNPVVMFERFTVEIHNDLRMFILDSHCYSKDDDLGLHILFPDEK 64

Query: 89  QNWTFRANFMETTKFICRLEWQYGELIFDSFVSDYNFLNRHCGNSVCGWSARQDGVYLTN 148
           Q+W+F+ N++ TT F CRLEW+ G L FDSF S  +F+  +CGN  C WSARQDGVYL N
Sbjct: 65  QDWSFKGNWIATTSFHCRLEWEVGYLEFDSFKSAPDFVTNYCGNQTCIWSARQDGVYLNN 124

Query: 149 EVGQYVFYDYWDML 163
             G+ VFY+YW+M+
Sbjct: 125 AAGEQVFYNYWEMI 136

[Close]
BLAST of Cp4.1LG01g07390 vs. TrEMBL
Match: A0A0A0KIQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G017790 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 68/133 (51.13%), Postives = 93/133 (69.92%), Query Frame = 1 

Query: 1   MASHKLV-FLIGLLLIALFDTSMAKGKFSKNRNQDVIPKRPYSPPRTPLIQFRKYQIEIH 60
           MA  +L+  L+ LLL+  F+ SMAK K +K++ +    K     P  P++ F K+++EIH
Sbjct: 1   MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTE----KPDLPDPNNPIVSFEKFRVEIH 60

Query: 61  NDLRMFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRLEWQYGELIFDSF 120
           NDL M++LDSRCYSKDD+ GLH+LFPD+QQNW+F+ N+ +TT F CRLEW+ G L FDSF
Sbjct: 61  NDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEIGYLEFDSF 120

Query: 121 VSDYNFLNRHCGN 133
            SD  F+   C N
Sbjct: 121 KSDPAFVTDFCCN 129

[Close]
BLAST of Cp4.1LG01g07390 vs. TrEMBL
Match: V4T9D0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024107mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-17
Identity = 47/104 (45.19%), Postives = 58/104 (55.77%), Query Frame = 1 

Query: 58  IHNDLRMFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRLEWQYGELIFD 117
           I N+L    L++ C SKDDDLGL  L    + NWTFR NF  TT F C L W  G    D
Sbjct: 32  IINNLNNSTLEAHCKSKDDDLGLRRLAAQTEFNWTFRVNFWSTTLFFCDLRWASGHKACD 91

Query: 118 SFVSDYNFLNRHCGNSVCGWSARQDGVYLTNE-VGQYVFYDYWD 161
            + +D  FLN++C    C WSAR DG+Y  +E   +YV    WD
Sbjct: 92  VYCTDDQFLNKYCAYDFCRWSARDDGIYAFSEKKKRYVLAHKWD 135

[Close]
BLAST of Cp4.1LG01g07390 vs. TrEMBL
Match: A0A067FI95_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045824mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-17
Identity = 47/104 (45.19%), Postives = 58/104 (55.77%), Query Frame = 1 

Query: 58  IHNDLRMFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRLEWQYGELIFD 117
           I N+L    L++ C SKDDDLGL  L    + NWTFR NF  TT F C L W  G    D
Sbjct: 2   IINNLNNSTLEAHCKSKDDDLGLRRLAAQTEFNWTFRVNFWSTTLFFCDLRWASGHKACD 61

Query: 118 SFVSDYNFLNRHCGNSVCGWSARQDGVYLTNE-VGQYVFYDYWD 161
            + +D  FLN++C    C WSAR DG+Y  +E   +YV    WD
Sbjct: 62  VYCTDDQFLNKYCAYDFCRWSARDDGIYAFSEKKKRYVLAHKWD 105

[Close]
BLAST of Cp4.1LG01g07390 vs. TAIR10
Match: AT5G06030.1 (AT5G06030.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-08
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 1 

Query: 56  IEIHNDLRMFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRL-EWQYGEL 115
           I+ +ND   ++L   C S+DDDLG HIL   +   W F  NF  +T   C   + Q  + 
Sbjct: 50  IQNYND---YLLAIHCKSRDDDLGFHILAKGELFGWKFHVNFRYSTLCFCGFSQRQINKG 109

Query: 116 IFDSFVSDYNFLNRHCGNSVCGWSARQDGVYLTNEVGQ--YVFYDY 159
           +F  +V+  +F    C N  C W A +DG +   ++    Y+FY++
Sbjct: 110 VFIIYVASRDFY--RCAN--CTWKAEKDGFHGYGDIPTRGYLFYNW 148

[Close]
BLAST of Cp4.1LG01g07390 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 36/114 (31.58%), Postives = 57/114 (50.00%), Query Frame = 1 

Query: 53  KYQIEIHNDLR----MFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRLE 112
           ++Q+ + N L     +FI    C SK+DDLG   L   ++ +W F  N + +T F C + 
Sbjct: 40  EWQVTVVNGLTTGETLFI---HCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMN 99

Query: 113 WQYGELIFDSFVSDYNFLNRHCGNSVCGWSARQDGVYLTNEV-GQYVFYDYWDM 162
              G +  + F  D    +R CG   C W+A+ DG+YL N   G+ V    W++
Sbjct: 100 KDNGHMNVNVFWDDVILFHR-CGWKNCIWTAKTDGLYLWNSASGEDVLSRKWEV 149

[Close]
BLAST of Cp4.1LG01g07390 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 52.0 bits (123), Expect = 4.1e-07
Identity = 35/112 (31.25%), Postives = 55/112 (49.11%), Query Frame = 1 

Query: 53  KYQIEIHNDLR----MFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRLE 112
           ++Q+ + N L     +FI    C SK++DLG   L   D+ +W F  N + +T F C + 
Sbjct: 40  EWQVTVANGLTTGETLFI---HCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMS 99

Query: 113 WQYGELIFDSFVSDYNFLNRHCGNSVCGWSARQDGVYLTNE-VGQYVFYDYW 160
              G +    F  D    +R C    C W+A+ DG+YL N  +G+ V  + W
Sbjct: 100 KDDGHMNVKVFWDDVILFHR-CDWKNCVWTAKNDGLYLWNSAIGEDVLSEKW 147

[Close]
BLAST of Cp4.1LG01g07390 vs. TAIR10
Match: AT3G27680.1 (AT3G27680.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 50.8 bits (120), Expect = 9.0e-07
Identity = 30/97 (30.93%), Postives = 50/97 (51.55%), Query Frame = 1 

Query: 55  QIEIHNDLRMFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRLEWQYGEL 114
           +++ H +L M     RCYSK+D +G  I+        +FRAN   TT+F+C L+ +    
Sbjct: 29  ELKSHKNLWM-----RCYSKNDVIGPKIIPVGYDYVNSFRANIWGTTRFMCTLKQRPNYR 88

Query: 115 IFDSFVSDYNFLNRHCGNSVCGWSARQDGVYLTNEVG 152
            + +F + +     +   +   W AR+DG+YL  E G
Sbjct: 89  HYQNFTA-FKQYTAYDNGADWDWRAREDGIYLKKEGG 119

[Close]
BLAST of Cp4.1LG01g07390 vs. NCBI nr
Match: gi|700196255|gb|KGN51432.1| (hypothetical protein Csa_5G538550 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 6.4e-47
Identity = 95/163 (58.28%), Postives = 114/163 (69.94%), Query Frame = 1 

Query: 1   MASHKLVFLIGLLLIALFDTSMAKGKFSKNRNQDVIPKRPYSPPRTPLIQFRKYQIEIHN 60
           MA H LV LI L LI LFD SMA+  F+              P ++ +IQ   YQIEIHN
Sbjct: 1   MAPHLLVLLIFLFLIVLFDMSMARFSFA--------------PQKSSIIQLHHYQIEIHN 60

Query: 61  DLRMFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMETTKFICRLEWQYGELIFDSFV 120
           DL M++LDS C+SKD+DLGLHILFP + Q+W+F+ N  ETTKF C LEW+ G L FDSF 
Sbjct: 61  DLEMYLLDSHCFSKDNDLGLHILFPGELQDWSFQDNDFETTKFRCILEWENGLLEFDSFK 120

Query: 121 SDYNFLNRHCGNSVCGWSARQDGVYLTNEVGQYVFYDYWDMLL 164
           +++NFLN  CGN  C WSARQDGVYLTN  G+YVF DYWDML+
Sbjct: 121 TNHNFLNNFCGNLTCSWSARQDGVYLTNVKGEYVFQDYWDMLI 149

[Close]
BLAST of Cp4.1LG01g07390 vs. NCBI nr
Match: gi|700194417|gb|KGN49594.1| (hypothetical protein Csa_5G016040 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 7.4e-43
Identity = 79/134 (58.96%), Postives = 101/134 (75.37%), Query Frame = 1 

Query: 29  KNRNQDVIPKRPYSPPRTPLIQFRKYQIEIHNDLRMFILDSRCYSKDDDLGLHILFPDDQ 88
           K +N+   PK   S P  P++ F ++ +EIHNDLRMFILDS CYSKDDDLGLHILFPD++
Sbjct: 5   KAKNKSPTPK--LSVPNNPVVMFERFTVEIHNDLRMFILDSHCYSKDDDLGLHILFPDEK 64

Query: 89  QNWTFRANFMETTKFICRLEWQYGELIFDSFVSDYNFLNRHCGNSVCGWSARQDGVYLTN 148
           Q+W+F+ N++ TT F CRLEW+ G L FDSF S  +F+  +CGN  C WSARQDGVYL N
Sbjct: 65  QDWSFKGNWIATTSFHCRLEWEVGYLEFDSFKSAPDFVTNYCGNQTCIWSARQDGVYLNN 124

Query: 149 EVGQYVFYDYWDML 163
             G+ VFY+YW+M+
Sbjct: 125 AAGEQVFYNYWEMI 136

[Close]
BLAST of Cp4.1LG01g07390 vs. NCBI nr
Match: gi|659134192|ref|XP_008467075.1| (PREDICTED: uncharacterized protein LOC103504513, partial [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 5.3e-41
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 1 

Query: 26  KFSKNRNQDVIPKRPYSPPRTPLIQFRKYQIEIHNDLRMFILDSRCYSKDDDLGLHILFP 85
           K  KNR    +PK     P  PL+ F  +++EIHN+L  +ILDS CYSKDDDLGLH L+P
Sbjct: 15  KSPKNR----VPKPDLPLPNNPLVSFEGFRVEIHNELLTYILDSSCYSKDDDLGLHRLYP 74

Query: 86  DDQQNWTFRANFMETTKFICRLEWQYGELIFDSFVSDYNFLNRHCGNSVCGWSARQDGVY 145
           ++QQNW+F+ N++ TT F C+LEW+   L FDSF SD +F+  +CGN  C WSARQDGVY
Sbjct: 75  NEQQNWSFKGNWIATTDFHCKLEWEIAYLEFDSFKSDPDFVTNYCGNRTCIWSARQDGVY 134

Query: 146 LTNEVGQYVFYDYWDML 163
           L N VGQ VFYDYW+ML
Sbjct: 135 LNNAVGQQVFYDYWEML 147

[Close]
BLAST of Cp4.1LG01g07390 vs. NCBI nr
Match: gi|659105279|ref|XP_008453057.1| (PREDICTED: uncharacterized protein LOC103493879, partial [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 1.0e-36
Identity = 69/108 (63.89%), Postives = 85/108 (78.70%), Query Frame = 1 

Query: 41  YSPPRTPLIQFRKYQIEIHNDLRMFILDSRCYSKDDDLGLHILFPDDQQNWTFRANFMET 100
           ++P +  +IQ R YQ++IHNDL M++LDS C+SKD+DLGLHILFP +QQ+W+F  N  ET
Sbjct: 8   FAPQKPSIIQLRHYQVKIHNDLEMYLLDSHCFSKDNDLGLHILFPGEQQDWSFEDNIFET 67

Query: 101 TKFICRLEWQYGELIFDSFVSDYNFLNRHCGNSVCGWSARQDGVYLTN 149
           TKF CRLEW+ G L FDSF SD +FLN  CGN  C WSA+QDGVYLTN
Sbjct: 68  TKFRCRLEWENGLLEFDSFKSDLDFLNNFCGNLTCSWSAKQDGVYLTN 115

[Close]
BLAST of Cp4.1LG01g07390 vs. NCBI nr
Match: gi|659105271|ref|XP_008453055.1| (PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 3.9e-36
Identity = 70/134 (52.24%), Postives = 96/134 (71.64%), Query Frame = 1 

Query: 29  KNRNQDVIPKRPYSPPRTPLIQFRKYQIEIHNDLRMFILDSRCYSKDDDLGLHILFPDDQ 88
           K ++Q+  P+ P   P  PL+ F K+ I I+N+L+M++LDS CYSKDDDLG  +L+P+D+
Sbjct: 7   KIKSQETGPELP--KPHEPLVTFHKFNIRIYNELQMYLLDSHCYSKDDDLGTKVLYPNDE 66

Query: 89  QNWTFRANFMETTKFICRLEWQYGELIFDSFVSDYNFLNRHCGNSVCGWSARQDGVYLTN 148
           Q+W+FR N++ TT F C+LEW+ G L FD+F +D  FL   C  S C WSARQDGVYLTN
Sbjct: 67  QSWSFRGNWLGTTNFHCKLEWENGYLEFDAFSNDVKFLTNFCAKSSCCWSARQDGVYLTN 126

Query: 149 EVGQYVFYDYWDML 163
           + GQ VF   W+M+
Sbjct: 127 QNGQVVFNQNWEMI 138

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g07390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g07390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSN2_CUCSA4.5e-4758.28Uncharacterized protein OS=Cucumis sativus GN=Csa_5G538550 PE=4 SV=1[more]
A0A0A0KL79_CUCSA5.1e-4358.96Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016040 PE=4 SV=1[more]
A0A0A0KIQ4_CUCSA1.0e-3051.13Uncharacterized protein OS=Cucumis sativus GN=Csa_5G017790 PE=4 SV=1[more]
V4T9D0_9ROSI2.2e-1745.19Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024107mg PE=4 SV=1[more]
A0A067FI95_CITSI2.2e-1745.19Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045824mg PE=4 S... [more]
BLAST of Cp4.1LG01g07390 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06030.13.7e-0832.08 Plant self-incompatibility protein S1 family[more]
AT4G16295.11.1e-0731.58 S-protein homologue 1[more]
AT4G29035.14.1e-0731.25 Plant self-incompatibility protein S1 family[more]
AT3G27680.19.0e-0730.93 Plant self-incompatibility protein S1 family[more]
BLAST of Cp4.1LG01g07390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196255|gb|KGN51432.1|6.4e-4758.28hypothetical protein Csa_5G538550 [Cucumis sativus][more]
gi|700194417|gb|KGN49594.1|7.4e-4358.96hypothetical protein Csa_5G016040 [Cucumis sativus][more]
gi|659134192|ref|XP_008467075.1|5.3e-4157.66PREDICTED: uncharacterized protein LOC103504513, partial [Cucumis melo][more]
gi|659105279|ref|XP_008453057.1|1.0e-3663.89PREDICTED: uncharacterized protein LOC103493879, partial [Cucumis melo][more]
gi|659105271|ref|XP_008453055.1|3.9e-3652.24PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g07390.1Cp4.1LG01g07390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 55..153
score: 3.0
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 47..160
score: 7.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g07390CmaCh04G010300Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g07390CSPI05G00480Wild cucumber (PI 183967)cpecpiB424
Cp4.1LG01g07390CsaV3_5G014260Cucumber (Chinese Long) v3cpecucB0529
Cp4.1LG01g07390Carg00137Silver-seed gourdcarcpeB0938
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g07390Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g07390Cucurbita maxima (Rimu)cmacpeB722
Cp4.1LG01g07390Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g07390Cucurbita moschata (Rifu)cmocpeB674
Cp4.1LG01g07390Bottle gourd (USVL1VR-Ls)cpelsiB361
Cp4.1LG01g07390Watermelon (Charleston Gray)cpewcgB409
Cp4.1LG01g07390Melon (DHL92) v3.5.1cpemeB431
Cp4.1LG01g07390Melon (DHL92) v3.6.1cpemedB422
Cp4.1LG01g07390Melon (DHL92) v3.6.1cpemedB502
Cp4.1LG01g07390Wax gourdcpewgoB0553