Cp4.1LG01g06520 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g06520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L23A
Location	Cp4.1LG01 : 14135 .. 15778 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTTGAGGCCGCCTTCTCGCAAATACCTTCATTCTTCTTTCTAGGGCAGCAGCACTAGCAGCACTCCGCTCGTAGCCGCCGGTAACCCCTCTCTTCTTCTCTCTCTTGAATGCCCGTTCGTTTTTTCGTTTTCATCGTTATGTTTTCTTTCTGTCTTTGTGTACTCAAAACAAGAAAATATTTCCGTCTTTTACTGACAAGAATCAACAGTCTTGTTCAATTTATCTATTGCCTCAAGACTTCGGGATCTTTCCCTTAAGTCTTGCCTATTGTTTTGATTTGTTTGTTACAGTTAGAGTGTTGTGTTTTCATCCTTGATTTCGTTTATTAGTGCTATTCTTATTGATAAATTTCCTCCCGTTTCGTTGTTTGGTTCGGGCAGGAGGGTAATTTTGATACAGGGTTTCAGCGATGGCACCTAAAGGTATGTGCGCATTGTGTTTTTGTGGTTTCAGTACGCAATGTTCGTTTATTCGAATCAGTGAGTTCCATTGTAATCTAGTACGGGGATATTACTCGAAAATTTATGATATCCACTTCTGCTCTGAGTTACATGGGTCAGTGGATTTCTATGTGCCTGGTGTTTATAGAAATTTATTTTCTTCTATTCCTATGTATACAATTTGGTGTTAGGATTTAAACATATTATATTGCTGTGAAGATTAGTTAGTTGTGACCAATGCTCTCTATATTTTCCAGTATAGTTGGTACCGATCCTAGAAATTGTTAGTGCATTATGTCCTCTTTCATTTAGTTGTTTTCTCCTCGTTTGATGGAAAACAAATTGATGTTCTAAATTTGAATTGTTTTGAGAATATACTGGAAGAATGGCATCTGAGCTCTTAATGTACTGTACTAACTGGTTGCTCTTGAGCTGTTGCAATTCTTTGTTGTGTTCTATTCTAAATTGATGGTTTTGCAGCTGACAACACCAAGAAGACTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAGTCTGGACCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACATTCCATCGCCCCAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGACTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGTACGCATGTATGAATTTAGAAGTTACACTTGCCACCAAAGTTTACCATCATCATTTACCTAGGTGGCATGGAACAGAAGAAATAATAGTTCGTATGATTCTTTCTAGCTTCGCCAATGGCAATACATTAGCTATAACTGCTTGGCTGTTTGGGTTCGATAGTGCATGCCATTTTATTTTCAGATATTTTTCATAATGAATAAAGTTAAAATTGATTTCTTAAATGCATATGTTAGGTTATGACTAGTGTCCTAACTATATTCTTGGTATGCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGATTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATCTAN

mRNA sequence

TCTTTTGAGGCCGCCTTCTCGCAAATACCTTCATTCTTCTTTCTAGGGCAGCAGCACTAGCAGCACTCCGCTCGTAGCCGCCGGAGGGTAATTTTGATACAGGGTTTCAGCGATGGCACCTAAAGCTGACAACACCAAGAAGACTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAGTCTGGACCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACATTCCATCGCCCCAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGACTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGATTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATCTAN

Coding sequence (CDS)

ATGGCACCTAAAGCTGACAACACCAAGAAGACTGATCCTAAAGCACAAGCCCTGAAGACAGCCAAGGCGGTCAAGTCTGGACCAACTTTCAAGAAGGCTAAGAAGATCAGAACATCGGTCACATTCCATCGCCCCAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGGATCAGTGCGACTCCTAGACATAAGTTAGACCAATACCAAATTCTTAAATATCCATTGACCACTGAGTCTGCAATGAAGAAGATTGAGGATAATAACACACTTGTTTTTATTGTCGATATTCGTGCCGACAAGAAAAAAATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCTGATGGAACAAAGAAGGCATATGTTAGGTTAACCCCAGATTATGATGCTCTAGACGTGGCAAACAAGATTGGAATTATCTAN

Protein sequence

MAPKADNTKKTDPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGIIX

Homology

[Close]

BLAST of Cp4.1LG01g06520 vs. Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.6e-68
Identity = 141/154 (91.56%), Postives = 146/154 (94.81%), Query Frame = 1


Query: 1   MAP-KADNTKKTDPKAQALKTAKAVKSGPT-FKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK+D KAQALKTAKAVKSG T FKK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g06520 vs. Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-65
Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 1


Query: 1   MAP-KADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T KK ++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA  R+KLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g06520 vs. Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-65
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTF--KKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A   KK D KAQALK AKAVKSG +   KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]

BLAST of Cp4.1LG01g06520 vs. Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-64
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   MAP-KADNTKKTDPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK DPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g06520 vs. Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.2e-64
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   MAP-KADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK DPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g06520 vs. TrEMBL
Match: A0A0A0KQU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264270 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.4e-73
Identity = 148/152 (97.37%), Postives = 149/152 (98.03%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD TKK DPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
            TPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]

BLAST of Cp4.1LG01g06520 vs. TrEMBL
Match: A0A0A0KNR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505240 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.0e-72
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD+TKKTDPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g06520 vs. TrEMBL
Match: W9R299_9ROSA (60S ribosomal protein L23A OS=Morus notabilis GN=L484_025406 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-71
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADNTKK+DPKAQA KTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKSDPKAQASKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SA PRHKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SAPPRHKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g06520 vs. TrEMBL
Match: A0A0A0KS61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180850 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.6e-70
Identity = 145/153 (94.77%), Postives = 149/153 (97.39%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD++KK DPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 60  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 119

Query: 61  SATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 120 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 179

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 180 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212

[Close]

BLAST of Cp4.1LG01g06520 vs. TrEMBL
Match: M5X1F0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012791mg PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.9e-70
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   MAP-KADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KADNTKK+DPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRP+TLKK+RNPKYPR
Sbjct: 1   MAPAKADNTKKSDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPRTLKKERNPKYPR 60

Query: 61  ISATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g06520 vs. TAIR10
Match: AT2G39460.1 (AT2G39460.1 ribosomal protein L23AA)

HSP 1 Score: 246.9 bits (629), Expect = 8.1e-66
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   MAP-KADNTKKTDPKAQALKTAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK DPKA+ALK AKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g06520 vs. TAIR10
Match: AT3G55280.1 (AT3G55280.1 ribosomal protein L23AB)

HSP 1 Score: 245.4 bits (625), Expect = 2.3e-65
Identity = 135/154 (87.66%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   MAP-KADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKK DPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPR+KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Cp4.1LG01g06520 vs. NCBI nr
Match: gi|449445294|ref|XP_004140408.1| (PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 4.9e-73
Identity = 148/152 (97.37%), Postives = 149/152 (98.03%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD TKK DPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120
            TPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           NTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 NTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]

BLAST of Cp4.1LG01g06520 vs. NCBI nr
Match: gi|449464192|ref|XP_004149813.1| (PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 1.4e-72
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD+TKKTDPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g06520 vs. NCBI nr
Match: gi|703099468|ref|XP_010096658.1| (60S ribosomal protein L23A [Morus notabilis])

HSP 1 Score: 277.3 bits (708), Expect = 1.6e-71
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADNTKK+DPKAQA KTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKSDPKAQASKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SA PRHKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SAPPRHKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g06520 vs. NCBI nr
Match: gi|659127083|ref|XP_008463516.1| (PREDICTED: 60S ribosomal protein L23a-like [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 1.6e-71
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD+TKK DPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Cp4.1LG01g06520 vs. NCBI nr
Match: gi|700195349|gb|KGN50526.1| (hypothetical protein Csa_5G180850 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 2.3e-70
Identity = 145/153 (94.77%), Postives = 149/153 (97.39%), Query Frame = 1


Query: 1   MAPKADNTKKTDPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD++KK DPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 60  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 119

Query: 61  SATPRHKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPR+KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 120 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 179

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 180 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g06520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL23A_DAUCA	3.6e-68	91.56	60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1	[more]
RL23A_TOBAC	1.3e-65	88.96	60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1	[more]
RL23A_FRIAG	1.7e-65	88.96	60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1	[more]
R23A1_ARATH	1.4e-64	87.66	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2	[more]
R23A2_ARATH	4.2e-64	87.66	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1	[more]

BLAST of Cp4.1LG01g06520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQU4_CUCSA	3.4e-73	97.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264270 PE=3 SV=1	[more]
A0A0A0KNR3_CUCSA	1.0e-72	97.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505240 PE=3 SV=1	[more]
W9R299_9ROSA	1.1e-71	96.08	60S ribosomal protein L23A OS=Morus notabilis GN=L484_025406 PE=3 SV=1	[more]
A0A0A0KS61_CUCSA	1.6e-70	94.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180850 PE=3 SV=1	[more]
M5X1F0_PRUPE	7.9e-70	94.81	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012791mg PE=3 SV=1	[more]

BLAST of Cp4.1LG01g06520 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39460.1	8.1e-66	87.66	ribosomal protein L23AA	[more]
AT3G55280.1	2.3e-65	87.66	ribosomal protein L23AB	[more]

BLAST of Cp4.1LG01g06520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445294\|ref\|XP_004140408.1\|	4.9e-73	97.37	PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis sativus]	[more]
gi\|449464192\|ref\|XP_004149813.1\|	1.4e-72	97.39	PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus]	[more]
gi\|703099468\|ref\|XP_010096658.1\|	1.6e-71	96.08	60S ribosomal protein L23A [Morus notabilis]	[more]
gi\|659127083\|ref\|XP_008463516.1\|	1.6e-71	96.08	PREDICTED: 60S ribosomal protein L23a-like [Cucumis melo]	[more]
gi\|700195349\|gb\|KGN50526.1\|	2.3e-70	94.77	hypothetical protein Csa_5G180850 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019985	Ribosomal_L23
IPR013025	Ribosomal_L25/23
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR005633	Ribosomal_L23/L25_N
IPR001014	Ribosomal_L23/L25_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g06520.1	Cp4.1LG01g06520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 130..145 scor
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 14..61 score: 1.4
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 68..152 score: 2.5
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 70..145 score: 6.12
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 72..152 score: 22
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 72..138 score: 2.7
IPR019985	Ribosomal protein L23	TIGRFAMs	TIGR03636	TIGR03636	coord: 76..152 score: 5.0
None	No IPR available	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 6..152 score: 6.9E
None	No IPR available	PANTHER	PTHR11620:SF14	SUBFAMILY NOT NAMED	coord: 6..152 score: 6.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g06520	CmoCh04G000040	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g06520	Csa5G264270	Cucumber (Chinese Long) v2	cpecuB433
Cp4.1LG01g06520	CsaV3_5G012620	Cucumber (Chinese Long) v3	cpecucB0532
Cp4.1LG01g06520	CsaV3_5G012820	Cucumber (Chinese Long) v3	cpecucB0561
Cp4.1LG01g06520	Carg27080	Silver-seed gourd	carcpeB1036

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g06520	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g06520	Wild cucumber (PI 183967)	cpecpiB432
Cp4.1LG01g06520	Watermelon (Charleston Gray)	cpewcgB361
Cp4.1LG01g06520	Watermelon (97103) v1	cpewmB468
Cp4.1LG01g06520	Cucumber (Gy14) v2	cgybcpeB642